Gene annotation
Transcriptome id Sobic.003G249100.2
Synonym Sb03g030540
Functional annotation HMG1/2, putative, expressed
UniProt A0A1W0VYU7
Pfam PF00505
Panther DB PTHR13711 PTHR13711:SF200
NCBI CDD KOG0381; HMG box-containing protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G34450 : HMG-box (high mobility group) DNA-binding family protein
RAP-DB (Rice) LOC_Os01g47600.1 : HMG1/2, putative, expressed
MaizeGDB (Corn) Zm00025a028135
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.003G249100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G238100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
2 Sobic.003G332900 expressed protein K14404: CPSF4, cleavage and polyadenylation specificity factor subunit 4
3 Sobic.001G341800 von Willebrand factor type A domain containing protein, expressed -
4 Sobic.002G038300 RNA recognition motif containing protein, putative, expressed -
5 Sobic.002G404900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA pseudouridine synthase, putative, expressed -
6 Sobic.009G036300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
7 Sobic.001G161400 single-stranded DNA-binding protein, putative, expressed -
8 Sobic.001G202500 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed K17278: membrane-associated progesterone receptor component
9 Sobic.003G068600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
10 Sobic.008G148400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein DSP1, putative, expressed -
11 Sobic.001G437200 ATP-dependent Clp protease ATP-binding subunit, putative, expressed -
12 Sobic.003G208300 PPR repeat domain containing protein, putative, expressed -
13 Sobic.009G004800 - -
14 Sobic.001G395300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsClp4 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
15 Sobic.006G204100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
16 Sobic.001G179100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplast post-illumination chlorophyll fluorescence increase protein, putative, expressed -
17 Sobic.002G386400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
18 Sobic.003G039300 expressed protein -
19 Sobic.009G137000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monooxygenase, putative, expressed -
20 Sobic.001G324400 thymidine kinase, putative, expressed K00857: tdk, thymidine kinase


Gene co-expression network
sample Sobic003G249100 Sobic003G249100 Sobic009G238100 Sobic009G238100 Sobic003G249100--Sobic009G238100 Sobic003G332900 Sobic003G332900 Sobic003G249100--Sobic003G332900 Sobic001G341800 Sobic001G341800 Sobic003G249100--Sobic001G341800 Sobic002G038300 Sobic002G038300 Sobic003G249100--Sobic002G038300 Sobic002G404900 Sobic002G404900 Sobic003G249100--Sobic002G404900 Sobic009G036300 Sobic009G036300 Sobic003G249100--Sobic009G036300 Sobic001G161400 Sobic001G161400 Sobic003G249100--Sobic001G161400 Sobic001G202500 Sobic001G202500 Sobic003G249100--Sobic001G202500 Sobic003G068600 Sobic003G068600 Sobic003G249100--Sobic003G068600 Sobic008G148400 Sobic008G148400 Sobic009G238100--Sobic008G148400 Sobic001G426400 Sobic001G426400 Sobic009G238100--Sobic001G426400 Sobic009G253000 Sobic009G253000 Sobic009G238100--Sobic009G253000 Sobic001G179100 Sobic001G179100 Sobic009G238100--Sobic001G179100 Sobic005G169600 Sobic005G169600 Sobic009G238100--Sobic005G169600 Sobic009G238100--Sobic009G036300 Sobic003G030400 Sobic003G030400 Sobic009G238100--Sobic003G030400 Sobic007G227600 Sobic007G227600 Sobic009G238100--Sobic007G227600 Sobic009G238100--Sobic002G038300 Sobic008G165900 Sobic008G165900 Sobic003G332900--Sobic008G165900 Sobic010G211500 Sobic010G211500 Sobic003G332900--Sobic010G211500 Sobic004G231600 Sobic004G231600 Sobic003G332900--Sobic004G231600 Sobic001G207200 Sobic001G207200 Sobic003G332900--Sobic001G207200 Sobic008G022701 Sobic008G022701 Sobic003G332900--Sobic008G022701 Sobic002G131000 Sobic002G131000 Sobic003G332900--Sobic002G131000 Sobic001G224200 Sobic001G224200 Sobic003G332900--Sobic001G224200 Sobic003G332900--Sobic009G238100 Sobic006G128400 Sobic006G128400 Sobic003G332900--Sobic006G128400 Sobic009G190800 Sobic009G190800 Sobic001G341800--Sobic009G190800 Sobic002G404200 Sobic002G404200 Sobic001G341800--Sobic002G404200 Sobic007G029100 Sobic007G029100 Sobic001G341800--Sobic007G029100 Sobic001G341800--Sobic001G202500 Sobic001G341800--Sobic009G036300 Sobic001G324400 Sobic001G324400 Sobic001G341800--Sobic001G324400 Sobic002G281800 Sobic002G281800 Sobic001G341800--Sobic002G281800 Sobic007G168200 Sobic007G168200 Sobic001G341800--Sobic007G168200 Sobic001G367500 Sobic001G367500 Sobic001G341800--Sobic001G367500 Sobic002G386400 Sobic002G386400 Sobic002G038300--Sobic002G386400 Sobic001G161300 Sobic001G161300 Sobic002G038300--Sobic001G161300 Sobic002G163700 Sobic002G163700 Sobic002G038300--Sobic002G163700 Sobic001G388400 Sobic001G388400 Sobic002G038300--Sobic001G388400 Sobic009G234200 Sobic009G234200 Sobic002G038300--Sobic009G234200 Sobic009G138900 Sobic009G138900 Sobic002G038300--Sobic009G138900 Sobic003G208300 Sobic003G208300 Sobic002G038300--Sobic003G208300 Sobic001G450600 Sobic001G450600 Sobic002G038300--Sobic001G450600 Sobic010G028000 Sobic010G028000 Sobic002G038300--Sobic010G028000 Sobic006G237100 Sobic006G237100 Sobic002G404900--Sobic006G237100 Sobic009G137000 Sobic009G137000 Sobic002G404900--Sobic009G137000 Sobic001G395300 Sobic001G395300 Sobic002G404900--Sobic001G395300 Sobic001G437200 Sobic001G437200 Sobic002G404900--Sobic001G437200 Sobic002G404900--Sobic009G036300 Sobic002G404900--Sobic001G161400 Sobic005G009300 Sobic005G009300 Sobic002G404900--Sobic005G009300 Sobic001G445200 Sobic001G445200 Sobic002G404900--Sobic001G445200 Sobic006G204100 Sobic006G204100 Sobic002G404900--Sobic006G204100 Sobic009G036300--Sobic007G227600 Sobic009G036300--Sobic001G388400 Sobic010G074200 Sobic010G074200 Sobic009G036300--Sobic010G074200 Sobic009G036300--Sobic010G028000 Sobic010G074100 Sobic010G074100 Sobic009G036300--Sobic010G074100 Sobic009G036300--Sobic010G211500 Sobic009G036300--Sobic009G234200 Sobic009G036300--Sobic006G204100 Sobic009G036300--Sobic002G163700 Sobic001G161400--Sobic006G237100 Sobic003G039300 Sobic003G039300 Sobic001G161400--Sobic003G039300 Sobic001G161400--Sobic006G204100 Sobic003G330100 Sobic003G330100 Sobic001G161400--Sobic003G330100 Sobic001G161400--Sobic002G404900 Sobic003G444500 Sobic003G444500 Sobic001G161400--Sobic003G444500 Sobic001G161400--Sobic009G234200 Sobic003G084500 Sobic003G084500 Sobic001G161400--Sobic003G084500 Sobic003G286300 Sobic003G286300 Sobic001G161400--Sobic003G286300 Sobic004G297500 Sobic004G297500 Sobic001G202500--Sobic004G297500 Sobic001G202500--Sobic001G161400 Sobic009G029700 Sobic009G029700 Sobic001G202500--Sobic009G029700 Sobic001G202500--Sobic001G341800 Sobic003G283800 Sobic003G283800 Sobic001G202500--Sobic003G283800 Sobic003G310100 Sobic003G310100 Sobic001G202500--Sobic003G310100 Sobic001G202500--Sobic001G437200 Sobic001G202500--Sobic002G404200 Sobic004G268100 Sobic004G268100 Sobic001G202500--Sobic004G268100 Sobic007G205600 Sobic007G205600 Sobic003G068600--Sobic007G205600 Sobic003G068600--Sobic007G227600 Sobic003G422800 Sobic003G422800 Sobic003G068600--Sobic003G422800 Sobic003G068600--Sobic010G211500 Sobic003G068600--Sobic002G163700 Sobic003G068600--Sobic009G238100 Sobic003G068600--Sobic002G038300 Sobic010G231100 Sobic010G231100 Sobic003G068600--Sobic010G231100 Sobic003G174100 Sobic003G174100 Sobic003G068600--Sobic003G174100
Octagon: transcription factors


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