Gene annotation
Transcriptome id Sobic.002G409900.1
Synonym EMB269, CPSAR1, Sb02g042350, ATOBGC
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
spo0B-associated GTP-binding protein, putative, expressed
UniProt C5X4W3
Pfam PF09269 PF01926 PF01018
Panther DB PTHR11702 PTHR11702:SF20
NCBI CDD KOG1489; Predicted GTP-binding protein (ODN superfamily)
KEGG Orthology -
Gene Ontology GO:0000166; nucleotide binding GO:0005525GTP binding


Orthologs (automatic annotation)
TAIR AT5G18570 : GTP1/OBG family protein
RAP-DB (Rice) LOC_Os07g47300.1 : spo0B-associated GTP-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a054558 , Zm00025a049767 , Zm00025a015390
Brachypodium KQK14787
Barley HORVU2Hr1G020240.6 , HORVU2Hr1G020240.7 , HORVU2Hr1G020240.2 , HORVU2Hr1G020240.8 , HORVU2Hr1G020250.1 , HORVU2Hr1G020240.4 , HORVU2Hr1G020240.5 , HORVU2Hr1G020240.3
Wheat TraesCS2D02G118000 , TraesCS2A02G117000 , TraesCS2A02G117000 , TraesCS2B02G137100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G445200 expressed protein -
2 Sobic.005G009300 expressed protein -
3 Sobic.007G027000 expressed protein -
4 Sobic.002G156100 phosphoglycerate mutase, putative, expressed -
5 Sobic.003G345900 histone deacetylase, putative, expressed -
6 Sobic.001G293300 chaperonin, putative, expressed K04078: groES, chaperonin GroES
7 Sobic.003G162800 expressed protein -
8 Sobic.003G158300 3-hydroxyacyl-CoA dehydrogenase, putative, expressed K10527: enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
9 Sobic.002G404900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA pseudouridine synthase, putative, expressed -
10 Sobic.002G181132 - -
11 Sobic.008G004800 "ferritin-1, chloroplast precursor"("PubMedID : 26759170,PubMedID : 24597475")@ferritin-1, chloroplast precursor, putative, expressed K00522: ferritin heavy chain
12 Sobic.006G088000 translocon Tic40, putative, expressed -
13 Sobic.006G024500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed -
14 Sobic.009G036300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
15 Sobic.006G021800 uncharacterized protein family UPF0016 domain containing protein, expressed -
16 Sobic.003G236300 tat pathway signal sequence family protein, expressed -
17 Sobic.001G249400 tetrapyrrole methylase family protein, putative, expressed K07056: 16S rRNA (cytidine1402-2'-O)-methyltransferase
18 Sobic.006G237100 amidase, putative, expressed K02433: gatA, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A
19 Sobic.004G297500 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05607: methylglutaconyl-CoA hydratase
20 Sobic.004G214400 tic20, putative, expressed -


Gene co-expression network
sample Sobic002G409900 Sobic002G409900 Sobic001G445200 Sobic001G445200 Sobic002G409900--Sobic001G445200 Sobic005G009300 Sobic005G009300 Sobic002G409900--Sobic005G009300 Sobic007G027000 Sobic007G027000 Sobic002G409900--Sobic007G027000 Sobic002G156100 Sobic002G156100 Sobic002G409900--Sobic002G156100 Sobic003G345900 Sobic003G345900 Sobic002G409900--Sobic003G345900 Sobic001G293300 Sobic001G293300 Sobic002G409900--Sobic001G293300 Sobic003G162800 Sobic003G162800 Sobic002G409900--Sobic003G162800 Sobic003G158300 Sobic003G158300 Sobic002G409900--Sobic003G158300 Sobic002G404900 Sobic002G404900 Sobic002G409900--Sobic002G404900 Sobic006G237100 Sobic006G237100 Sobic001G445200--Sobic006G237100 Sobic001G445200--Sobic005G009300 Sobic001G437200 Sobic001G437200 Sobic001G445200--Sobic001G437200 Sobic001G281500 Sobic001G281500 Sobic001G445200--Sobic001G281500 Sobic001G445200--Sobic002G404900 Sobic003G310100 Sobic003G310100 Sobic001G445200--Sobic003G310100 Sobic001G445200--Sobic002G156100 Sobic001G445200--Sobic002G409900 Sobic001G445200--Sobic003G162800 Sobic005G009300--Sobic001G445200 Sobic005G009300--Sobic002G404900 Sobic005G009300--Sobic003G162800 Sobic005G009300--Sobic006G237100 Sobic005G009300--Sobic002G409900 Sobic009G137000 Sobic009G137000 Sobic005G009300--Sobic009G137000 Sobic001G395300 Sobic001G395300 Sobic005G009300--Sobic001G395300 Sobic003G170200 Sobic003G170200 Sobic005G009300--Sobic003G170200 Sobic003G283800 Sobic003G283800 Sobic005G009300--Sobic003G283800 Sobic007G027000--Sobic002G156100 Sobic007G027000--Sobic003G162800 Sobic007G027000--Sobic001G445200 Sobic007G027000--Sobic002G409900 Sobic007G027000--Sobic003G345900 Sobic004G123300 Sobic004G123300 Sobic007G027000--Sobic004G123300 Sobic001G514100 Sobic001G514100 Sobic007G027000--Sobic001G514100 Sobic002G181132 Sobic002G181132 Sobic007G027000--Sobic002G181132 Sobic005G014700 Sobic005G014700 Sobic007G027000--Sobic005G014700 Sobic002G156100--Sobic003G162800 Sobic001G375000 Sobic001G375000 Sobic002G156100--Sobic001G375000 Sobic003G128400 Sobic003G128400 Sobic002G156100--Sobic003G128400 Sobic001G382800 Sobic001G382800 Sobic002G156100--Sobic001G382800 Sobic003G045300 Sobic003G045300 Sobic002G156100--Sobic003G045300 Sobic010G255100 Sobic010G255100 Sobic002G156100--Sobic010G255100 Sobic008G067100 Sobic008G067100 Sobic002G156100--Sobic008G067100 Sobic002G156100--Sobic005G014700 Sobic001G424300 Sobic001G424300 Sobic002G156100--Sobic001G424300 Sobic003G345900--Sobic003G162800 Sobic004G003900 Sobic004G003900 Sobic003G345900--Sobic004G003900 Sobic003G345900--Sobic002G181132 Sobic003G345900--Sobic001G375000 Sobic006G088000 Sobic006G088000 Sobic003G345900--Sobic006G088000 Sobic003G345900--Sobic002G156100 Sobic010G027200 Sobic010G027200 Sobic003G345900--Sobic010G027200 Sobic006G217000 Sobic006G217000 Sobic003G345900--Sobic006G217000 Sobic004G263200 Sobic004G263200 Sobic003G345900--Sobic004G263200 Sobic001G433100 Sobic001G433100 Sobic001G293300--Sobic001G433100 Sobic007G126900 Sobic007G126900 Sobic001G293300--Sobic007G126900 Sobic004G214400 Sobic004G214400 Sobic001G293300--Sobic004G214400 Sobic001G293300--Sobic002G156100 Sobic003G298400 Sobic003G298400 Sobic001G293300--Sobic003G298400 Sobic006G021800 Sobic006G021800 Sobic001G293300--Sobic006G021800 Sobic001G293300--Sobic001G445200 Sobic001G293300--Sobic001G382800 Sobic008G090900 Sobic008G090900 Sobic001G293300--Sobic008G090900 Sobic003G162800--Sobic001G375000 Sobic003G327200 Sobic003G327200 Sobic003G162800--Sobic003G327200 Sobic003G162800--Sobic002G156100 Sobic003G162800--Sobic003G345900 Sobic003G162800--Sobic002G181132 Sobic003G162800--Sobic004G003900 Sobic003G162800--Sobic003G045300 Sobic003G162800--Sobic001G514100 Sobic003G162800--Sobic010G027200 Sobic002G409800 Sobic002G409800 Sobic003G158300--Sobic002G409800 Sobic002G189400 Sobic002G189400 Sobic003G158300--Sobic002G189400 Sobic001G414900 Sobic001G414900 Sobic003G158300--Sobic001G414900 Sobic004G127700 Sobic004G127700 Sobic003G158300--Sobic004G127700 Sobic002G392700 Sobic002G392700 Sobic003G158300--Sobic002G392700 Sobic010G205500 Sobic010G205500 Sobic003G158300--Sobic010G205500 Sobic001G233700 Sobic001G233700 Sobic003G158300--Sobic001G233700 Sobic010G112300 Sobic010G112300 Sobic003G158300--Sobic010G112300 Sobic003G158300--Sobic002G409900 Sobic002G404900--Sobic006G237100 Sobic002G404900--Sobic009G137000 Sobic002G404900--Sobic001G395300 Sobic002G404900--Sobic001G437200 Sobic009G036300 Sobic009G036300 Sobic002G404900--Sobic009G036300 Sobic001G161400 Sobic001G161400 Sobic002G404900--Sobic001G161400 Sobic002G404900--Sobic005G009300 Sobic002G404900--Sobic001G445200 Sobic006G204100 Sobic006G204100 Sobic002G404900--Sobic006G204100
Octagon: transcription factors


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