Gene annotation
Transcriptome id Sobic.008G004800.1
Synonym ATFER4, Sb08g000550, FER4
Functional annotation ferritin-1, chloroplast precursor( (PubMedID : 26759170,(PubMedID : 24597475)
ferritin-1, chloroplast precursor, putative, expressed
UniProt A0A1B6PAG3
Pfam PF00210
Panther DB PTHR11431 PTHR11431:SF4
NCBI CDD KOG2332; Ferritin
KEGG Orthology K00522; ferritin heavy chain
Gene Ontology GO:0008199; ferric iron binding GO:0006879cellular iron ion homeostasis GO:0006826iron ion transport


Orthologs (automatic annotation)
TAIR AT2G40300 : ferritin 4
RAP-DB (Rice) LOC_Os12g01530.2 : ferritin-1, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a033274 , Zm00025a053663
Brachypodium -
Barley -
Wheat TraesCS5D02G157600 , TraesCS4D02G131700 , TraesCS4D02G131700 , TraesCS5B02G151000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G531400 riboflavin biosynthesis protein ribD, putative, expressed K11752: diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
2 Sobic.002G297900 CDGSH iron sulfur domain-containing protein 1, putative, expressed -
3 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
4 Sobic.006G145500 Beta-glucosidase 16 (Precursor)(PubMedID : 26186930)@Os4bglu16 - monolignol beta-glucoside homologue, expressed K05350: beta-glucosidase
5 Sobic.010G215500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed K17710: pentatricopeptide repeat domain-containing protein 1
6 Sobic.001G293300 chaperonin, putative, expressed K04078: groES, chaperonin GroES
7 Sobic.001G366500 cytochrome P450, putative, expressed -
8 Sobic.003G292300 tRNA synthetase, putative, expressed K01867: WARS, tryptophanyl-tRNA synthetase
9 Sobic.001G527100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
10 Sobic.004G076000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein peroxiredoxin-5 (Os)(PubMedID : 27208977)@peroxiredoxin, putative, expressed -
11 Sobic.009G001500 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
12 Sobic.001G435600 - -
13 Sobic.004G055500 inositol-1-monophosphatase, putative, expressed K01092: E3.1.3.25, IMPA, myo-inositol-1(or 4)-monophosphatase
14 Sobic.009G115050 - -
15 Sobic.001G122400 ribosomal protein S13p/S18e, putative, expressed K02952: RP-S13, small subunit ribosomal protein S13
16 Sobic.001G391400 S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
17 Sobic.002G424100 parvulin-type peptidyl prolyl cis/trans isomerase, putative, expressed -
18 Sobic.008G030000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@elongation factor P, putative, expressed K02356: elongation factor P
19 Sobic.003G383600 - -
20 Sobic.007G013400 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor


Gene co-expression network
sample Sobic008G004800 Sobic008G004800 Sobic001G531400 Sobic001G531400 Sobic008G004800--Sobic001G531400 Sobic002G297900 Sobic002G297900 Sobic008G004800--Sobic002G297900 Sobic003G295800 Sobic003G295800 Sobic008G004800--Sobic003G295800 Sobic006G145500 Sobic006G145500 Sobic008G004800--Sobic006G145500 Sobic010G215500 Sobic010G215500 Sobic008G004800--Sobic010G215500 Sobic001G293300 Sobic001G293300 Sobic008G004800--Sobic001G293300 Sobic001G366500 Sobic001G366500 Sobic008G004800--Sobic001G366500 Sobic003G292300 Sobic003G292300 Sobic008G004800--Sobic003G292300 Sobic001G527100 Sobic001G527100 Sobic008G004800--Sobic001G527100 Sobic001G291900 Sobic001G291900 Sobic001G531400--Sobic001G291900 Sobic003G085000 Sobic003G085000 Sobic001G531400--Sobic003G085000 Sobic007G208300 Sobic007G208300 Sobic001G531400--Sobic007G208300 Sobic007G090400 Sobic007G090400 Sobic001G531400--Sobic007G090400 Sobic004G336000 Sobic004G336000 Sobic001G531400--Sobic004G336000 Sobic006G106400 Sobic006G106400 Sobic001G531400--Sobic006G106400 Sobic001G122400 Sobic001G122400 Sobic001G531400--Sobic001G122400 Sobic001G104800 Sobic001G104800 Sobic001G531400--Sobic001G104800 Sobic006G055800 Sobic006G055800 Sobic001G531400--Sobic006G055800 Sobic008G112300 Sobic008G112300 Sobic002G297900--Sobic008G112300 Sobic004G076000 Sobic004G076000 Sobic002G297900--Sobic004G076000 Sobic002G297900--Sobic003G295800 Sobic002G297900--Sobic010G215500 Sobic008G123600 Sobic008G123600 Sobic002G297900--Sobic008G123600 Sobic003G328200 Sobic003G328200 Sobic002G297900--Sobic003G328200 Sobic007G185100 Sobic007G185100 Sobic002G297900--Sobic007G185100 Sobic001G017000 Sobic001G017000 Sobic002G297900--Sobic001G017000 Sobic004G311100 Sobic004G311100 Sobic002G297900--Sobic004G311100 Sobic007G013400 Sobic007G013400 Sobic003G295800--Sobic007G013400 Sobic009G001500 Sobic009G001500 Sobic003G295800--Sobic009G001500 Sobic001G040000 Sobic001G040000 Sobic003G295800--Sobic001G040000 Sobic004G317900 Sobic004G317900 Sobic003G295800--Sobic004G317900 Sobic009G098100 Sobic009G098100 Sobic003G295800--Sobic009G098100 Sobic003G295800--Sobic001G017000 Sobic001G027600 Sobic001G027600 Sobic003G295800--Sobic001G027600 Sobic001G453300 Sobic001G453300 Sobic003G295800--Sobic001G453300 Sobic003G383500 Sobic003G383500 Sobic003G295800--Sobic003G383500 Sobic004G036100 Sobic004G036100 Sobic006G145500--Sobic004G036100 Sobic003G383600 Sobic003G383600 Sobic006G145500--Sobic003G383600 Sobic007G170800 Sobic007G170800 Sobic006G145500--Sobic007G170800 Sobic004G044200 Sobic004G044200 Sobic006G145500--Sobic004G044200 Sobic004G038300 Sobic004G038300 Sobic006G145500--Sobic004G038300 Sobic008G163200 Sobic008G163200 Sobic006G145500--Sobic008G163200 Sobic001G255300 Sobic001G255300 Sobic006G145500--Sobic001G255300 Sobic006G145500--Sobic009G001500 Sobic003G068300 Sobic003G068300 Sobic006G145500--Sobic003G068300 Sobic010G215500--Sobic003G295800 Sobic010G215500--Sobic007G185100 Sobic010G215500--Sobic003G328200 Sobic010G215500--Sobic003G383600 Sobic010G215500--Sobic007G013400 Sobic010G215500--Sobic002G297900 Sobic010G215500--Sobic004G076000 Sobic010G215500--Sobic004G317900 Sobic004G335800 Sobic004G335800 Sobic010G215500--Sobic004G335800 Sobic001G433100 Sobic001G433100 Sobic001G293300--Sobic001G433100 Sobic007G126900 Sobic007G126900 Sobic001G293300--Sobic007G126900 Sobic004G214400 Sobic004G214400 Sobic001G293300--Sobic004G214400 Sobic002G156100 Sobic002G156100 Sobic001G293300--Sobic002G156100 Sobic003G298400 Sobic003G298400 Sobic001G293300--Sobic003G298400 Sobic006G021800 Sobic006G021800 Sobic001G293300--Sobic006G021800 Sobic001G445200 Sobic001G445200 Sobic001G293300--Sobic001G445200 Sobic001G382800 Sobic001G382800 Sobic001G293300--Sobic001G382800 Sobic008G090900 Sobic008G090900 Sobic001G293300--Sobic008G090900 Sobic003G096100 Sobic003G096100 Sobic001G366500--Sobic003G096100 Sobic001G003600 Sobic001G003600 Sobic001G366500--Sobic001G003600 Sobic007G127600 Sobic007G127600 Sobic001G366500--Sobic007G127600 Sobic001G366500--Sobic007G170800 Sobic001G435600 Sobic001G435600 Sobic001G366500--Sobic001G435600 Sobic006G172700 Sobic006G172700 Sobic001G366500--Sobic006G172700 Sobic004G060700 Sobic004G060700 Sobic001G366500--Sobic004G060700 Sobic003G058600 Sobic003G058600 Sobic001G366500--Sobic003G058600 Sobic009G115050 Sobic009G115050 Sobic001G366500--Sobic009G115050 Sobic005G110481 Sobic005G110481 Sobic003G292300--Sobic005G110481 Sobic001G069500 Sobic001G069500 Sobic003G292300--Sobic001G069500 Sobic010G011200 Sobic010G011200 Sobic003G292300--Sobic010G011200 Sobic007G090537 Sobic007G090537 Sobic003G292300--Sobic007G090537 Sobic003G292300--Sobic009G001500 Sobic003G292300--Sobic003G295800 Sobic003G225100 Sobic003G225100 Sobic003G292300--Sobic003G225100 Sobic003G292300--Sobic003G383600 Sobic003G292300--Sobic007G013400 Sobic001G240000 Sobic001G240000 Sobic001G527100--Sobic001G240000 Sobic001G527100--Sobic001G122400 Sobic002G198000 Sobic002G198000 Sobic001G527100--Sobic002G198000 Sobic001G527100--Sobic004G335800 Sobic003G386300 Sobic003G386300 Sobic001G527100--Sobic003G386300 Sobic004G164100 Sobic004G164100 Sobic001G527100--Sobic004G164100 Sobic001G391400 Sobic001G391400 Sobic001G527100--Sobic001G391400 Sobic001G527100--Sobic001G040000 Sobic001G527100--Sobic003G328200
Octagon: transcription factors


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