Gene annotation
Transcriptome id Sobic.001G062900.1
Synonym PT, AMP1, MFO1, Sb01g005710, HPT, COP2
Functional annotation peptidase, putative, expressed
UniProt C5WY45
Pfam PF02225 PF04389 PF04253
Panther DB PTHR10404 PTHR10404:SF42
NCBI CDD KOG2195; Transferrin receptor and related proteins containing the protease-associated (PA) domain
KEGG Orthology K01301; N-acetylated-alpha-linked acidic dipeptidase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G54720 : Peptidase M28 family protein
RAP-DB (Rice) LOC_Os03g57660.1 : peptidase, putative, expressed
MaizeGDB (Corn) Zm00025a008499
Brachypodium KQK12828 , KQK12829
Barley HORVU5Hr1G103900.14 , HORVU5Hr1G103900.13
Wheat TraesCS5A02G427500 , TraesCS5A02G427500 , TraesCS5B02G429500 , TraesCS5D02G435600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G090403 - -
2 Sobic.003G342100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dihydroflavonol-4-reductase, putative, expressed -
3 Sobic.009G215500 transcription initiation factor IIB, putative, expressed K15196: BRF1, transcription factor IIIB 90 kDa subunit
4 Sobic.001G073900 lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
5 Sobic.001G530900 expressed protein -
6 Sobic.001G531500 peroxisomal biogenesis factor 11, putative, expressed -
7 Sobic.003G332700 Os1bglu5 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed K01188: beta-glucosidase
8 Sobic.001G105200 - K14810: DDX56, ATP-dependent RNA helicase DDX56/DBP9
9 Sobic.005G001700 mitochondrial substrate carrier family protein, putative, expressed -
10 Sobic.008G001900 mitochondrial substrate carrier family protein, putative, expressed -
11 Sobic.001G465700 aminotransferase, putative, expressed K00833: adenosylmethionine---8-amino-7-oxononanoate aminotransferase
12 Sobic.003G426700 expressed protein -
13 Sobic.009G123900 L1P family of ribosomal proteins domain containing protein, expressed K02863: RP-L1, MRPL1, large subunit ribosomal protein L1
14 Sobic.001G133000 expressed protein -
15 Sobic.005G068700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD kinase, putative, expressed K00858: ppnK, NAD+ kinase
16 Sobic.009G038900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
17 Sobic.004G042200 OsFBO8 - F-box and other domain containing protein, expressed K12115: clock-associated PAS protein ZTL
18 Sobic.010G205100 Sucrose phosphate synthase genes(PubMedID : 24456189)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase
19 Sobic.003G185900 protein phosphatase 2C, putative, expressed -
20 Sobic.005G118400 expressed protein -


Gene co-expression network
sample Sobic001G062900 Sobic001G062900 Sobic007G090403 Sobic007G090403 Sobic001G062900--Sobic007G090403 Sobic003G342100 Sobic003G342100 Sobic001G062900--Sobic003G342100 Sobic009G215500 Sobic009G215500 Sobic001G062900--Sobic009G215500 Sobic001G073900 Sobic001G073900 Sobic001G062900--Sobic001G073900 Sobic001G530900 Sobic001G530900 Sobic001G062900--Sobic001G530900 Sobic001G531500 Sobic001G531500 Sobic001G062900--Sobic001G531500 Sobic003G332700 Sobic003G332700 Sobic001G062900--Sobic003G332700 Sobic001G105200 Sobic001G105200 Sobic001G062900--Sobic001G105200 Sobic005G001700 Sobic005G001700 Sobic001G062900--Sobic005G001700 Sobic005G068700 Sobic005G068700 Sobic007G090403--Sobic005G068700 Sobic002G244200 Sobic002G244200 Sobic007G090403--Sobic002G244200 Sobic006G219600 Sobic006G219600 Sobic007G090403--Sobic006G219600 Sobic007G090403--Sobic001G062900 Sobic005G149200 Sobic005G149200 Sobic007G090403--Sobic005G149200 Sobic001G133000 Sobic001G133000 Sobic007G090403--Sobic001G133000 Sobic009G123900 Sobic009G123900 Sobic007G090403--Sobic009G123900 Sobic006G065100 Sobic006G065100 Sobic007G090403--Sobic006G065100 Sobic007G090403--Sobic009G215500 Sobic003G342100--Sobic001G073900 Sobic003G342100--Sobic001G062900 Sobic003G342100--Sobic003G332700 Sobic009G242100 Sobic009G242100 Sobic003G342100--Sobic009G242100 Sobic005G045000 Sobic005G045000 Sobic003G342100--Sobic005G045000 Sobic003G426700 Sobic003G426700 Sobic003G342100--Sobic003G426700 Sobic003G342100--Sobic001G531500 Sobic006G064100 Sobic006G064100 Sobic003G342100--Sobic006G064100 Sobic002G049600 Sobic002G049600 Sobic003G342100--Sobic002G049600 Sobic009G215500--Sobic001G530900 Sobic008G044100 Sobic008G044100 Sobic009G215500--Sobic008G044100 Sobic004G134200 Sobic004G134200 Sobic009G215500--Sobic004G134200 Sobic003G155100 Sobic003G155100 Sobic009G215500--Sobic003G155100 Sobic006G031800 Sobic006G031800 Sobic009G215500--Sobic006G031800 Sobic009G215500--Sobic006G219600 Sobic009G215500--Sobic001G133000 Sobic001G465700 Sobic001G465700 Sobic009G215500--Sobic001G465700 Sobic006G050700 Sobic006G050700 Sobic009G215500--Sobic006G050700 Sobic001G073900--Sobic003G332700 Sobic008G001900 Sobic008G001900 Sobic001G073900--Sobic008G001900 Sobic008G117000 Sobic008G117000 Sobic001G073900--Sobic008G117000 Sobic001G073900--Sobic003G342100 Sobic001G065600 Sobic001G065600 Sobic001G073900--Sobic001G065600 Sobic001G073900--Sobic001G531500 Sobic001G073900--Sobic005G001700 Sobic004G235600 Sobic004G235600 Sobic001G073900--Sobic004G235600 Sobic001G073900--Sobic002G049600 Sobic010G002700 Sobic010G002700 Sobic001G530900--Sobic010G002700 Sobic001G530900--Sobic009G215500 Sobic001G378100 Sobic001G378100 Sobic001G530900--Sobic001G378100 Sobic007G185700 Sobic007G185700 Sobic001G530900--Sobic007G185700 Sobic005G118400 Sobic005G118400 Sobic001G530900--Sobic005G118400 Sobic005G084500 Sobic005G084500 Sobic001G530900--Sobic005G084500 Sobic001G530900--Sobic003G332700 Sobic001G530900--Sobic001G465700 Sobic003G217700 Sobic003G217700 Sobic001G530900--Sobic003G217700 Sobic002G118200 Sobic002G118200 Sobic001G531500--Sobic002G118200 Sobic001G531500--Sobic006G064100 Sobic002G403600 Sobic002G403600 Sobic001G531500--Sobic002G403600 Sobic001G531500--Sobic001G073900 Sobic010G205100 Sobic010G205100 Sobic001G531500--Sobic010G205100 Sobic001G531500--Sobic009G123900 Sobic001G531500--Sobic005G001700 Sobic001G531500--Sobic008G001900 Sobic001G531500--Sobic003G332700 Sobic003G332700--Sobic001G073900 Sobic003G332700--Sobic008G001900 Sobic003G332700--Sobic008G117000 Sobic003G332700--Sobic001G530900 Sobic003G332700--Sobic004G235600 Sobic003G332700--Sobic001G531500 Sobic003G442700 Sobic003G442700 Sobic003G332700--Sobic003G442700 Sobic010G085100 Sobic010G085100 Sobic003G332700--Sobic010G085100 Sobic003G332700--Sobic005G118400 Sobic001G105200--Sobic001G062900 Sobic001G105200--Sobic003G332700 Sobic001G105200--Sobic003G426700 Sobic001G105200--Sobic002G049600 Sobic001G105200--Sobic010G205100 Sobic001G105200--Sobic009G123900 Sobic003G180200 Sobic003G180200 Sobic001G105200--Sobic003G180200 Sobic001G105200--Sobic002G118200 Sobic001G105200--Sobic001G531500 Sobic005G001700--Sobic008G001900 Sobic002G220900 Sobic002G220900 Sobic005G001700--Sobic002G220900 Sobic005G204200 Sobic005G204200 Sobic005G001700--Sobic005G204200 Sobic010G067100 Sobic010G067100 Sobic005G001700--Sobic010G067100 Sobic005G063000 Sobic005G063000 Sobic005G001700--Sobic005G063000 Sobic003G185900 Sobic003G185900 Sobic005G001700--Sobic003G185900 Sobic002G402700 Sobic002G402700 Sobic005G001700--Sobic002G402700 Sobic003G036200 Sobic003G036200 Sobic005G001700--Sobic003G036200 Sobic007G009200 Sobic007G009200 Sobic005G001700--Sobic007G009200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.