Gene annotation
Transcriptome id Sobic.001G105200.1
Synonym Sb01g009400
Functional annotation -
UniProt A0A1B6QI98
Pfam PF00271 PF00270
Panther DB PTHR24031 PTHR24031:SF333
NCBI CDD -
KEGG Orthology K14810; DDX56, ATP-dependent RNA helicase DDX56/DBP9
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G34910 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os03g51900.1 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a016890
Brachypodium KQK13410
Barley HORVU4Hr1G009960.4 , HORVU4Hr1G009960.6 , HORVU4Hr1G009960.7 , HORVU4Hr1G009960.5 , HORVU4Hr1G009960.2 , HORVU4Hr1G009960.3 , HORVU4Hr1G009960.1 , HORVU4Hr1G009960.8
Wheat TraesCS4D02G058800 , TraesCS4D02G058800 , TraesCS4B02G058900 , TraesCS4B02G058900 , TraesCS4A02G255900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G062900 peptidase, putative, expressed K01301: N-acetylated-alpha-linked acidic dipeptidase
2 Sobic.003G332700 Os1bglu5 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed K01188: beta-glucosidase
3 Sobic.003G426700 expressed protein -
4 Sobic.002G049600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.010G205100 Sucrose phosphate synthase genes(PubMedID : 24456189)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase
6 Sobic.009G123900 L1P family of ribosomal proteins domain containing protein, expressed K02863: RP-L1, MRPL1, large subunit ribosomal protein L1
7 Sobic.003G180200 - -
8 Sobic.002G118200 tetratricopeptide repeat domain containing protein, putative, expressed K03255: TIF31, protein TIF31
9 Sobic.001G531500 peroxisomal biogenesis factor 11, putative, expressed -
10 Sobic.001G420400 tRNA synthetases class II domain containing protein, expressed K01893: NARS, asparaginyl-tRNA synthetase
11 Sobic.004G086150 - -
12 Sobic.004G235600 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
13 Sobic.001G530900 expressed protein -
14 Sobic.005G111550 - -
15 Sobic.001G073900 lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
16 Sobic.002G314400 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
17 Sobic.009G248801 - -
18 Sobic.001G244700 RIO1 family protein, expressed K08851: TP53RK, PRPK, TP53 regulating kinase and related kinases
19 Sobic.008G001900 mitochondrial substrate carrier family protein, putative, expressed -
20 Sobic.009G215500 transcription initiation factor IIB, putative, expressed K15196: BRF1, transcription factor IIIB 90 kDa subunit


Gene co-expression network
sample Sobic001G105200 Sobic001G105200 Sobic001G062900 Sobic001G062900 Sobic001G105200--Sobic001G062900 Sobic003G332700 Sobic003G332700 Sobic001G105200--Sobic003G332700 Sobic003G426700 Sobic003G426700 Sobic001G105200--Sobic003G426700 Sobic002G049600 Sobic002G049600 Sobic001G105200--Sobic002G049600 Sobic010G205100 Sobic010G205100 Sobic001G105200--Sobic010G205100 Sobic009G123900 Sobic009G123900 Sobic001G105200--Sobic009G123900 Sobic003G180200 Sobic003G180200 Sobic001G105200--Sobic003G180200 Sobic002G118200 Sobic002G118200 Sobic001G105200--Sobic002G118200 Sobic001G531500 Sobic001G531500 Sobic001G105200--Sobic001G531500 Sobic007G090403 Sobic007G090403 Sobic001G062900--Sobic007G090403 Sobic003G342100 Sobic003G342100 Sobic001G062900--Sobic003G342100 Sobic009G215500 Sobic009G215500 Sobic001G062900--Sobic009G215500 Sobic001G073900 Sobic001G073900 Sobic001G062900--Sobic001G073900 Sobic001G530900 Sobic001G530900 Sobic001G062900--Sobic001G530900 Sobic001G062900--Sobic001G531500 Sobic001G062900--Sobic003G332700 Sobic001G062900--Sobic001G105200 Sobic005G001700 Sobic005G001700 Sobic001G062900--Sobic005G001700 Sobic003G332700--Sobic001G073900 Sobic008G001900 Sobic008G001900 Sobic003G332700--Sobic008G001900 Sobic008G117000 Sobic008G117000 Sobic003G332700--Sobic008G117000 Sobic003G332700--Sobic001G530900 Sobic004G235600 Sobic004G235600 Sobic003G332700--Sobic004G235600 Sobic003G332700--Sobic001G531500 Sobic003G442700 Sobic003G442700 Sobic003G332700--Sobic003G442700 Sobic010G085100 Sobic010G085100 Sobic003G332700--Sobic010G085100 Sobic005G118400 Sobic005G118400 Sobic003G332700--Sobic005G118400 Sobic003G426700--Sobic002G049600 Sobic003G426700--Sobic003G342100 Sobic003G426700--Sobic001G062900 Sobic003G426700--Sobic001G105200 Sobic006G064100 Sobic006G064100 Sobic003G426700--Sobic006G064100 Sobic003G426700--Sobic001G073900 Sobic008G033200 Sobic008G033200 Sobic003G426700--Sobic008G033200 Sobic003G426700--Sobic010G205100 Sobic002G232200 Sobic002G232200 Sobic003G426700--Sobic002G232200 Sobic002G049600--Sobic001G073900 Sobic002G049600--Sobic008G033200 Sobic002G049600--Sobic008G117000 Sobic003G036200 Sobic003G036200 Sobic002G049600--Sobic003G036200 Sobic002G049600--Sobic003G332700 Sobic002G049600--Sobic003G426700 Sobic001G261408 Sobic001G261408 Sobic002G049600--Sobic001G261408 Sobic009G242100 Sobic009G242100 Sobic002G049600--Sobic009G242100 Sobic002G049600--Sobic003G342100 Sobic010G205100--Sobic006G064100 Sobic010G205100--Sobic010G085100 Sobic010G205100--Sobic001G531500 Sobic010G205100--Sobic001G073900 Sobic009G038900 Sobic009G038900 Sobic010G205100--Sobic009G038900 Sobic010G205100--Sobic003G036200 Sobic005G101200 Sobic005G101200 Sobic010G205100--Sobic005G101200 Sobic002G404800 Sobic002G404800 Sobic010G205100--Sobic002G404800 Sobic010G205100--Sobic003G332700 Sobic009G123900--Sobic002G118200 Sobic005G068700 Sobic005G068700 Sobic009G123900--Sobic005G068700 Sobic002G056500 Sobic002G056500 Sobic009G123900--Sobic002G056500 Sobic009G123900--Sobic003G036200 Sobic009G123900--Sobic001G531500 Sobic004G019800 Sobic004G019800 Sobic009G123900--Sobic004G019800 Sobic002G402700 Sobic002G402700 Sobic009G123900--Sobic002G402700 Sobic007G005400 Sobic007G005400 Sobic009G123900--Sobic007G005400 Sobic004G268300 Sobic004G268300 Sobic009G123900--Sobic004G268300 Sobic009G192800 Sobic009G192800 Sobic003G180200--Sobic009G192800 Sobic001G244700 Sobic001G244700 Sobic003G180200--Sobic001G244700 Sobic003G180200--Sobic001G105200 Sobic001G251800 Sobic001G251800 Sobic003G180200--Sobic001G251800 Sobic001G100900 Sobic001G100900 Sobic003G180200--Sobic001G100900 Sobic002G073250 Sobic002G073250 Sobic003G180200--Sobic002G073250 Sobic002G211800 Sobic002G211800 Sobic003G180200--Sobic002G211800 Sobic003G217700 Sobic003G217700 Sobic003G180200--Sobic003G217700 Sobic001G420400 Sobic001G420400 Sobic003G180200--Sobic001G420400 Sobic002G118200--Sobic007G005400 Sobic005G084500 Sobic005G084500 Sobic002G118200--Sobic005G084500 Sobic002G118200--Sobic001G531500 Sobic003G085100 Sobic003G085100 Sobic002G118200--Sobic003G085100 Sobic002G258600 Sobic002G258600 Sobic002G118200--Sobic002G258600 Sobic002G118200--Sobic009G123900 Sobic002G118200--Sobic004G019800 Sobic009G093100 Sobic009G093100 Sobic002G118200--Sobic009G093100 Sobic008G074000 Sobic008G074000 Sobic002G118200--Sobic008G074000 Sobic001G531500--Sobic002G118200 Sobic001G531500--Sobic006G064100 Sobic002G403600 Sobic002G403600 Sobic001G531500--Sobic002G403600 Sobic001G531500--Sobic001G073900 Sobic001G531500--Sobic010G205100 Sobic001G531500--Sobic009G123900 Sobic001G531500--Sobic005G001700 Sobic001G531500--Sobic008G001900 Sobic001G531500--Sobic003G332700
Octagon: transcription factors


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