Gene annotation
Transcriptome id Sobic.002G145500.2,Sobic.002G145500.5,Sobic.002G145500.4,Sobic.002G145500.3,Sobic.002G145500.6,Sobic.002G145500.1
Synonym Sb02g014490
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
BTBN18 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed
UniProt C5X7E1 , A0A1B6QB97
Pfam PF00651 PF03000 PF03000
Panther DB PTHR32370 PTHR32370:SF19
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G47800 : Phototropic-responsive NPH3 family protein
RAP-DB (Rice) LOC_Os09g09370.2 : BTBN18 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed
MaizeGDB (Corn) Zm00025a046245
Brachypodium PNT62853 , PNT62855 , PNT62854 , PNT62857 , PNT62856 , KQJ87007 , KQJ87006 , KQJ87004 , KQJ87005
Barley HORVU0Hr1G012710.3 , HORVU0Hr1G012710.4 , HORVU0Hr1G012710.6 , HORVU0Hr1G012710.1 , HORVU0Hr1G012710.2 , HORVU0Hr1G012710.5
Wheat TraesCS5D02G175800 , TraesCS5D02G175800 , TraesCS5B02G168600 , TraesCS5B02G168600 , TraesCS5B02G168600 , TraesCS5B02G168600 , TraesCS5A02G171100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G360200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
2 Sobic.009G161100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
3 Sobic.004G250200 ORMM1(PubMedID : 24676859)@RNA recognition motif family protein, expressed -
4 Sobic.001G148200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@antitermination NusB domain-containing protein, putative, expressed -
5 Sobic.009G206000 anthocyanidin 5,3-O-glucosyltransferase, putative, expressed -
6 Sobic.006G238100 LTPL126 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
7 Sobic.003G209300 - -
8 Sobic.007G034500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
9 Sobic.003G191000 FAD dependent oxidoreductase domain containing protein, expressed K03146: THI4, cysteine-dependent adenosine diphosphate thiazole synthase
10 Sobic.004G044200 enoyl-CoA hydratase/isomerase family protein, putative, expressed K01661: naphthoate synthase
11 Sobic.001G472000 Polyamine oxidase 1("PubMedID : 26759170,PubMedID : 24597475")@amine oxidase, flavin-containing, domain containing protein, expressed K13366: MPAO, polyamine oxidase
12 Sobic.007G069500 expressed protein -
13 Sobic.010G011200 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL
14 Sobic.007G142300 expressed protein -
15 Sobic.003G068300 transferase family protein, putative, expressed -
16 Sobic.003G330100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplast ribonuclease III domain protein, putative, expressed -
17 Sobic.004G038300 cycloartenol synthase, putative, expressed -
18 Sobic.008G072300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
19 Sobic.005G200600 dirigent, putative, expressed -
20 Sobic.010G012900 superoxide dismutase, chloroplast, putative, expressed K04564: superoxide dismutase, Fe-Mn family


Gene co-expression network
sample Sobic002G145500 Sobic002G145500 Sobic002G360200 Sobic002G360200 Sobic002G145500--Sobic002G360200 Sobic009G161100 Sobic009G161100 Sobic002G145500--Sobic009G161100 Sobic004G250200 Sobic004G250200 Sobic002G145500--Sobic004G250200 Sobic001G148200 Sobic001G148200 Sobic002G145500--Sobic001G148200 Sobic009G206000 Sobic009G206000 Sobic002G145500--Sobic009G206000 Sobic006G238100 Sobic006G238100 Sobic002G145500--Sobic006G238100 Sobic003G209300 Sobic003G209300 Sobic002G145500--Sobic003G209300 Sobic007G034500 Sobic007G034500 Sobic002G145500--Sobic007G034500 Sobic003G191000 Sobic003G191000 Sobic002G145500--Sobic003G191000 Sobic001G172300 Sobic001G172300 Sobic002G360200--Sobic001G172300 Sobic010G012900 Sobic010G012900 Sobic002G360200--Sobic010G012900 Sobic001G013900 Sobic001G013900 Sobic002G360200--Sobic001G013900 Sobic004G253800 Sobic004G253800 Sobic002G360200--Sobic004G253800 Sobic001G188600 Sobic001G188600 Sobic002G360200--Sobic001G188600 Sobic010G011200 Sobic010G011200 Sobic002G360200--Sobic010G011200 Sobic006G114300 Sobic006G114300 Sobic002G360200--Sobic006G114300 Sobic002G078000 Sobic002G078000 Sobic002G360200--Sobic002G078000 Sobic001G357200 Sobic001G357200 Sobic002G360200--Sobic001G357200 Sobic001G472000 Sobic001G472000 Sobic009G161100--Sobic001G472000 Sobic005G200600 Sobic005G200600 Sobic009G161100--Sobic005G200600 Sobic002G141100 Sobic002G141100 Sobic009G161100--Sobic002G141100 Sobic005G218600 Sobic005G218600 Sobic009G161100--Sobic005G218600 Sobic004G249400 Sobic004G249400 Sobic009G161100--Sobic004G249400 Sobic001G541300 Sobic001G541300 Sobic009G161100--Sobic001G541300 Sobic009G161100--Sobic006G238100 Sobic002G209800 Sobic002G209800 Sobic009G161100--Sobic002G209800 Sobic001G315200 Sobic001G315200 Sobic009G161100--Sobic001G315200 Sobic003G330100 Sobic003G330100 Sobic004G250200--Sobic003G330100 Sobic010G183400 Sobic010G183400 Sobic004G250200--Sobic010G183400 Sobic003G245800 Sobic003G245800 Sobic004G250200--Sobic003G245800 Sobic009G234200 Sobic009G234200 Sobic004G250200--Sobic009G234200 Sobic006G111600 Sobic006G111600 Sobic004G250200--Sobic006G111600 Sobic002G345200 Sobic002G345200 Sobic004G250200--Sobic002G345200 Sobic005G028900 Sobic005G028900 Sobic004G250200--Sobic005G028900 Sobic003G221700 Sobic003G221700 Sobic004G250200--Sobic003G221700 Sobic003G444500 Sobic003G444500 Sobic004G250200--Sobic003G444500 Sobic005G110481 Sobic005G110481 Sobic001G148200--Sobic005G110481 Sobic001G148200--Sobic003G444500 Sobic009G042200 Sobic009G042200 Sobic001G148200--Sobic009G042200 Sobic007G171800 Sobic007G171800 Sobic001G148200--Sobic007G171800 Sobic002G251400 Sobic002G251400 Sobic001G148200--Sobic002G251400 Sobic001G148200--Sobic010G011200 Sobic002G013700 Sobic002G013700 Sobic001G148200--Sobic002G013700 Sobic001G148200--Sobic007G034500 Sobic009G001500 Sobic009G001500 Sobic001G148200--Sobic009G001500 Sobic003G068300 Sobic003G068300 Sobic009G206000--Sobic003G068300 Sobic009G206000--Sobic006G238100 Sobic002G415300 Sobic002G415300 Sobic009G206000--Sobic002G415300 Sobic008G163200 Sobic008G163200 Sobic009G206000--Sobic008G163200 Sobic002G415400 Sobic002G415400 Sobic009G206000--Sobic002G415400 Sobic004G060700 Sobic004G060700 Sobic009G206000--Sobic004G060700 Sobic002G416950 Sobic002G416950 Sobic009G206000--Sobic002G416950 Sobic001G255300 Sobic001G255300 Sobic009G206000--Sobic001G255300 Sobic001G379300 Sobic001G379300 Sobic009G206000--Sobic001G379300 Sobic006G238100--Sobic001G379300 Sobic006G238100--Sobic002G416950 Sobic006G238100--Sobic004G060700 Sobic006G238100--Sobic001G255300 Sobic006G238100--Sobic005G200600 Sobic007G009600 Sobic007G009600 Sobic006G238100--Sobic007G009600 Sobic006G238100--Sobic002G415300 Sobic006G238100--Sobic008G163200 Sobic006G238100--Sobic002G415400 Sobic001G448700 Sobic001G448700 Sobic003G209300--Sobic001G448700 Sobic003G209300--Sobic002G145500 Sobic006G274866 Sobic006G274866 Sobic003G209300--Sobic006G274866 Sobic009G210100 Sobic009G210100 Sobic003G209300--Sobic009G210100 Sobic004G032100 Sobic004G032100 Sobic003G209300--Sobic004G032100 Sobic007G142300 Sobic007G142300 Sobic003G209300--Sobic007G142300 Sobic004G340000 Sobic004G340000 Sobic003G209300--Sobic004G340000 Sobic002G142500 Sobic002G142500 Sobic003G209300--Sobic002G142500 Sobic010G165100 Sobic010G165100 Sobic003G209300--Sobic010G165100 Sobic007G034500--Sobic007G171800 Sobic004G044000 Sobic004G044000 Sobic007G034500--Sobic004G044000 Sobic006G280050 Sobic006G280050 Sobic007G034500--Sobic006G280050 Sobic004G191200 Sobic004G191200 Sobic007G034500--Sobic004G191200 Sobic007G034500--Sobic001G357200 Sobic007G034500--Sobic009G001500 Sobic001G383900 Sobic001G383900 Sobic007G034500--Sobic001G383900 Sobic001G191000 Sobic001G191000 Sobic007G034500--Sobic001G191000 Sobic001G027600 Sobic001G027600 Sobic007G034500--Sobic001G027600 Sobic007G075700 Sobic007G075700 Sobic003G191000--Sobic007G075700 Sobic001G170900 Sobic001G170900 Sobic003G191000--Sobic001G170900 Sobic005G056201 Sobic005G056201 Sobic003G191000--Sobic005G056201 Sobic003G234101 Sobic003G234101 Sobic003G191000--Sobic003G234101 Sobic003G191000--Sobic007G009600 Sobic003G191000--Sobic009G161100 Sobic008G123600 Sobic008G123600 Sobic003G191000--Sobic008G123600 Sobic003G110100 Sobic003G110100 Sobic003G191000--Sobic003G110100 Sobic003G191000--Sobic005G200600
Octagon: transcription factors


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