Gene annotation
Transcriptome id Sobic.006G037300.1
Synonym Sb06g005640
Functional annotation membrane associated DUF588 domain containing protein, putative, expressed
UniProt C5YDQ9
Pfam PF04535
Panther DB PTHR11615 PTHR11615:SF151
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G17200 : Uncharacterised protein family (UPF0497)
RAP-DB (Rice) LOC_Os04g21320.1 : membrane associated DUF588 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a055770 , Zm00025a012080
Brachypodium PNT60802
Barley HORVU2Hr1G065330.6 , HORVU2Hr1G065330.5 , HORVU2Hr1G065330.4 , HORVU2Hr1G065330.3 , HORVU2Hr1G065330.2 , HORVU2Hr1G065330.1
Wheat TraesCS2B02G288100 , TraesCS2A02G269400 , TraesCS2D02G268400
Populus -


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cDNA sequences
Sobic.006G037300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G201000 down-regulated TF in developmental senescence(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
2 Sobic.005G030400 cytochrome P450, putative, expressed K09588: CYP90A1, cytochrome P450 family 90 subfamily A polypeptide 1
3 Sobic.009G034500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, stem and root, expression induced by IAA treatment"(PubMedID : 20528920)@MDR-like ABC transporter, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
4 Sobic.001G130700 domain of unknown function DUF966 domain containing protein, expressed -
5 Sobic.003G022200 DUF538 domain containing protein, putative, expressed -
6 Sobic.001G482300 3-ketoacyl-CoA synthase 10, putative, expressed K15397: 3-ketoacyl-CoA synthase
7 Sobic.001G306700 PPR repeat domain containing protein, putative, expressed -
8 Sobic.007G000400 B3 DNA binding domain containing protein, expressed -
9 Sobic.006G003951 - -
10 Sobic.006G278200 RNA-binding region RNP-1, putative, expressed -
11 Sobic.001G522400 FHA domain containing protein, putative, expressed -
12 Sobic.001G236800 tRNA methyltransferase, putative, expressed K00927: PGK, phosphoglycerate kinase
13 Sobic.002G095700 C2-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with C2 subfamily conserved sequence, expressed K10523: speckle-type POZ protein
14 Sobic.006G067200 - -
15 Sobic.003G195150 - K18121: glyoxylate/succinic semialdehyde reductase
16 Sobic.001G428000 uncharacterized TPR repeat-containing protein, putative, expressed -
17 Sobic.003G163100 expressed protein K08819: cyclin-dependent kinase 12/13
18 Sobic.004G189700 OsFBL33 - F-box domain and LRR containing protein, expressed -
19 Sobic.002G067800 - -
20 Sobic.001G527700 CAMK_CAMK_like_ULKh_APGy.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08269: ULK2, serine/threonine-protein kinase ULK2


Gene co-expression network
sample Sobic006G037300 Sobic006G037300 Sobic002G201000 Sobic002G201000 Sobic006G037300--Sobic002G201000 Sobic005G030400 Sobic005G030400 Sobic006G037300--Sobic005G030400 Sobic009G034500 Sobic009G034500 Sobic006G037300--Sobic009G034500 Sobic001G130700 Sobic001G130700 Sobic006G037300--Sobic001G130700 Sobic003G022200 Sobic003G022200 Sobic006G037300--Sobic003G022200 Sobic001G482300 Sobic001G482300 Sobic006G037300--Sobic001G482300 Sobic001G306700 Sobic001G306700 Sobic006G037300--Sobic001G306700 Sobic007G000400 Sobic007G000400 Sobic006G037300--Sobic007G000400 Sobic006G003951 Sobic006G003951 Sobic006G037300--Sobic006G003951 Sobic002G201000--Sobic006G037300 Sobic002G201000--Sobic005G030400 Sobic002G201000--Sobic009G034500 Sobic002G060450 Sobic002G060450 Sobic002G201000--Sobic002G060450 Sobic002G201000--Sobic001G482300 Sobic006G210200 Sobic006G210200 Sobic002G201000--Sobic006G210200 Sobic003G163100 Sobic003G163100 Sobic002G201000--Sobic003G163100 Sobic003G185250 Sobic003G185250 Sobic002G201000--Sobic003G185250 Sobic001G045700 Sobic001G045700 Sobic002G201000--Sobic001G045700 Sobic005G030400--Sobic006G037300 Sobic001G522400 Sobic001G522400 Sobic005G030400--Sobic001G522400 Sobic005G030400--Sobic007G000400 Sobic005G030400--Sobic002G201000 Sobic006G022500 Sobic006G022500 Sobic005G030400--Sobic006G022500 Sobic004G189700 Sobic004G189700 Sobic005G030400--Sobic004G189700 Sobic007G046900 Sobic007G046900 Sobic005G030400--Sobic007G046900 Sobic006G006500 Sobic006G006500 Sobic005G030400--Sobic006G006500 Sobic006G126600 Sobic006G126600 Sobic005G030400--Sobic006G126600 Sobic009G034500--Sobic006G037300 Sobic009G034500--Sobic002G201000 Sobic006G139300 Sobic006G139300 Sobic009G034500--Sobic006G139300 Sobic001G050300 Sobic001G050300 Sobic009G034500--Sobic001G050300 Sobic006G211000 Sobic006G211000 Sobic009G034500--Sobic006G211000 Sobic003G020300 Sobic003G020300 Sobic009G034500--Sobic003G020300 Sobic008G005600 Sobic008G005600 Sobic009G034500--Sobic008G005600 Sobic003G420201 Sobic003G420201 Sobic009G034500--Sobic003G420201 Sobic009G034500--Sobic001G482300 Sobic001G130700--Sobic003G022200 Sobic009G257500 Sobic009G257500 Sobic001G130700--Sobic009G257500 Sobic008G156200 Sobic008G156200 Sobic001G130700--Sobic008G156200 Sobic002G253600 Sobic002G253600 Sobic001G130700--Sobic002G253600 Sobic007G209000 Sobic007G209000 Sobic001G130700--Sobic007G209000 Sobic005G072400 Sobic005G072400 Sobic001G130700--Sobic005G072400 Sobic001G384600 Sobic001G384600 Sobic001G130700--Sobic001G384600 Sobic006G203200 Sobic006G203200 Sobic001G130700--Sobic006G203200 Sobic001G130700--Sobic006G037300 Sobic010G189100 Sobic010G189100 Sobic003G022200--Sobic010G189100 Sobic003G022200--Sobic001G130700 Sobic007G078300 Sobic007G078300 Sobic003G022200--Sobic007G078300 Sobic003G035500 Sobic003G035500 Sobic003G022200--Sobic003G035500 Sobic001G041400 Sobic001G041400 Sobic003G022200--Sobic001G041400 Sobic003G022200--Sobic002G253600 Sobic002G016900 Sobic002G016900 Sobic003G022200--Sobic002G016900 Sobic006G278200 Sobic006G278200 Sobic003G022200--Sobic006G278200 Sobic001G033400 Sobic001G033400 Sobic003G022200--Sobic001G033400 Sobic003G096300 Sobic003G096300 Sobic001G482300--Sobic003G096300 Sobic002G315000 Sobic002G315000 Sobic001G482300--Sobic002G315000 Sobic003G420800 Sobic003G420800 Sobic001G482300--Sobic003G420800 Sobic001G047200 Sobic001G047200 Sobic001G482300--Sobic001G047200 Sobic002G064400 Sobic002G064400 Sobic001G482300--Sobic002G064400 Sobic005G204100 Sobic005G204100 Sobic001G482300--Sobic005G204100 Sobic009G083300 Sobic009G083300 Sobic001G482300--Sobic009G083300 Sobic008G038200 Sobic008G038200 Sobic001G482300--Sobic008G038200 Sobic001G370000 Sobic001G370000 Sobic001G482300--Sobic001G370000 Sobic001G011300 Sobic001G011300 Sobic001G306700--Sobic001G011300 Sobic001G296400 Sobic001G296400 Sobic001G306700--Sobic001G296400 Sobic003G265500 Sobic003G265500 Sobic001G306700--Sobic003G265500 Sobic001G463500 Sobic001G463500 Sobic001G306700--Sobic001G463500 Sobic003G071600 Sobic003G071600 Sobic001G306700--Sobic003G071600 Sobic001G063800 Sobic001G063800 Sobic001G306700--Sobic001G063800 Sobic001G306700--Sobic006G037300 Sobic003G420900 Sobic003G420900 Sobic001G306700--Sobic003G420900 Sobic001G306700--Sobic002G064400 Sobic008G056900 Sobic008G056900 Sobic007G000400--Sobic008G056900 Sobic007G000400--Sobic001G522400 Sobic006G242401 Sobic006G242401 Sobic007G000400--Sobic006G242401 Sobic007G000400--Sobic001G045700 Sobic009G096100 Sobic009G096100 Sobic007G000400--Sobic009G096100 Sobic002G380100 Sobic002G380100 Sobic007G000400--Sobic002G380100 Sobic004G128200 Sobic004G128200 Sobic007G000400--Sobic004G128200 Sobic007G000400--Sobic003G163100 Sobic010G143200 Sobic010G143200 Sobic007G000400--Sobic010G143200 Sobic006G003901 Sobic006G003901 Sobic006G003951--Sobic006G003901 Sobic006G003951--Sobic001G011300 Sobic006G003951--Sobic006G037300 Sobic010G015900 Sobic010G015900 Sobic006G003951--Sobic010G015900 Sobic001G480550 Sobic001G480550 Sobic006G003951--Sobic001G480550 Sobic004G064000 Sobic004G064000 Sobic006G003951--Sobic004G064000 Sobic002G272250 Sobic002G272250 Sobic006G003951--Sobic002G272250 Sobic004G155800 Sobic004G155800 Sobic006G003951--Sobic004G155800 Sobic006G155700 Sobic006G155700 Sobic006G003951--Sobic006G155700
Octagon: transcription factors


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