Gene annotation
Transcriptome id Sobic.009G034500.1
Synonym Sb09g002940, P-glycoprotein, SbPGP22, PGP21
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, stem and root, expression induced by IAA treatment" (PubMedID : 20528920)
MDR-like ABC transporter, putative, expressed
UniProt A0A1Z5R0Q4
Pfam PF00664 PF00005
Panther DB PTHR24221:SF257 PTHR24221
NCBI CDD -
KEGG Orthology K05658; ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
Gene Ontology GO:0006810; transport GO:0016021integral component of membrane GO:0005524ATP binding GO:0016887ATPase activity


Orthologs (automatic annotation)
TAIR AT2G47000 : ATP binding cassette subfamily B4
RAP-DB (Rice) LOC_Os01g18670.1 : MDR-like ABC transporter, putative, expressed
MaizeGDB (Corn) Zm00025a027912 , Zm00025a035146
Brachypodium PNT70382 , KQK07666 , KQK09336 , KQK04014 , PNT72656 , KQK04013
Barley HORVU1Hr1G017460.1 , HORVU1Hr1G017460.3 , HORVU1Hr1G017460.2
Wheat TraesCS2B02G012200 , TraesCS1A02G081300 , TraesCS2A02G009700 , TraesCS1B02G099000 , TraesCS1D02G082900 , TraesCS1D02G082900 , TraesCS1D02G082900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G037300 membrane associated DUF588 domain containing protein, putative, expressed -
2 Sobic.002G201000 down-regulated TF in developmental senescence(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
3 Sobic.006G139300 plant protein of unknown function DUF869 domain containing protein, expressed -
4 Sobic.001G050300 LTPL83 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed -
5 Sobic.006G211000 transferase family protein, putative, expressed -
6 Sobic.003G020300 GDSL-like lipase/acylhydrolase, putative, expressed -
7 Sobic.008G005600 carotenoid synthesis regulator CarF, putative, expressed K10704: ubiquitin-conjugating enzyme E2 variant
8 Sobic.003G420201 - -
9 Sobic.001G482300 3-ketoacyl-CoA synthase 10, putative, expressed K15397: 3-ketoacyl-CoA synthase
10 Sobic.005G030400 cytochrome P450, putative, expressed K09588: CYP90A1, cytochrome P450 family 90 subfamily A polypeptide 1
11 Sobic.001G236800 tRNA methyltransferase, putative, expressed K00927: PGK, phosphoglycerate kinase
12 Sobic.006G184100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@dehydration response related protein, putative, expressed -
13 Sobic.009G001800 expressed protein -
14 Sobic.001G510200 estradiol 17-beta-dehydrogenase 12, putative, expressed K10251: HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase
15 Sobic.001G266200 POEI14 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
16 Sobic.002G338900 - -
17 Sobic.005G088500 integral membrane protein DUF6 containing protein, expressed -
18 Sobic.003G042100 MAR-binding filament-like protein 1, putative, expressed -
19 Sobic.001G522400 FHA domain containing protein, putative, expressed -
20 Sobic.004G189700 OsFBL33 - F-box domain and LRR containing protein, expressed -


Gene co-expression network
sample Sobic009G034500 Sobic009G034500 Sobic006G037300 Sobic006G037300 Sobic009G034500--Sobic006G037300 Sobic002G201000 Sobic002G201000 Sobic009G034500--Sobic002G201000 Sobic006G139300 Sobic006G139300 Sobic009G034500--Sobic006G139300 Sobic001G050300 Sobic001G050300 Sobic009G034500--Sobic001G050300 Sobic006G211000 Sobic006G211000 Sobic009G034500--Sobic006G211000 Sobic003G020300 Sobic003G020300 Sobic009G034500--Sobic003G020300 Sobic008G005600 Sobic008G005600 Sobic009G034500--Sobic008G005600 Sobic003G420201 Sobic003G420201 Sobic009G034500--Sobic003G420201 Sobic001G482300 Sobic001G482300 Sobic009G034500--Sobic001G482300 Sobic006G037300--Sobic002G201000 Sobic005G030400 Sobic005G030400 Sobic006G037300--Sobic005G030400 Sobic006G037300--Sobic009G034500 Sobic001G130700 Sobic001G130700 Sobic006G037300--Sobic001G130700 Sobic003G022200 Sobic003G022200 Sobic006G037300--Sobic003G022200 Sobic006G037300--Sobic001G482300 Sobic001G306700 Sobic001G306700 Sobic006G037300--Sobic001G306700 Sobic007G000400 Sobic007G000400 Sobic006G037300--Sobic007G000400 Sobic006G003951 Sobic006G003951 Sobic006G037300--Sobic006G003951 Sobic002G201000--Sobic006G037300 Sobic002G201000--Sobic005G030400 Sobic002G201000--Sobic009G034500 Sobic002G060450 Sobic002G060450 Sobic002G201000--Sobic002G060450 Sobic002G201000--Sobic001G482300 Sobic006G210200 Sobic006G210200 Sobic002G201000--Sobic006G210200 Sobic003G163100 Sobic003G163100 Sobic002G201000--Sobic003G163100 Sobic003G185250 Sobic003G185250 Sobic002G201000--Sobic003G185250 Sobic001G045700 Sobic001G045700 Sobic002G201000--Sobic001G045700 Sobic006G139300--Sobic003G020300 Sobic006G139300--Sobic003G420201 Sobic006G046500 Sobic006G046500 Sobic006G139300--Sobic006G046500 Sobic005G088500 Sobic005G088500 Sobic006G139300--Sobic005G088500 Sobic008G114600 Sobic008G114600 Sobic006G139300--Sobic008G114600 Sobic007G033300 Sobic007G033300 Sobic006G139300--Sobic007G033300 Sobic005G135700 Sobic005G135700 Sobic006G139300--Sobic005G135700 Sobic009G056400 Sobic009G056400 Sobic006G139300--Sobic009G056400 Sobic004G066100 Sobic004G066100 Sobic006G139300--Sobic004G066100 Sobic010G200900 Sobic010G200900 Sobic001G050300--Sobic010G200900 Sobic001G510200 Sobic001G510200 Sobic001G050300--Sobic001G510200 Sobic002G394700 Sobic002G394700 Sobic001G050300--Sobic002G394700 Sobic002G431700 Sobic002G431700 Sobic001G050300--Sobic002G431700 Sobic001G050300--Sobic005G088500 Sobic001G266200 Sobic001G266200 Sobic001G050300--Sobic001G266200 Sobic006G145600 Sobic006G145600 Sobic001G050300--Sobic006G145600 Sobic009G162800 Sobic009G162800 Sobic001G050300--Sobic009G162800 Sobic006G166800 Sobic006G166800 Sobic001G050300--Sobic006G166800 Sobic006G211000--Sobic009G034500 Sobic008G137901 Sobic008G137901 Sobic006G211000--Sobic008G137901 Sobic006G211000--Sobic001G510200 Sobic009G151000 Sobic009G151000 Sobic006G211000--Sobic009G151000 Sobic006G211000--Sobic006G166800 Sobic010G196400 Sobic010G196400 Sobic006G211000--Sobic010G196400 Sobic007G027200 Sobic007G027200 Sobic006G211000--Sobic007G027200 Sobic006G211000--Sobic009G162800 Sobic006G211000--Sobic001G266200 Sobic003G020300--Sobic006G139300 Sobic003G020300--Sobic008G114600 Sobic003G020300--Sobic006G046500 Sobic003G020300--Sobic005G088500 Sobic003G020300--Sobic003G420201 Sobic003G020300--Sobic004G066100 Sobic003G020300--Sobic007G033300 Sobic003G020300--Sobic005G135700 Sobic006G245300 Sobic006G245300 Sobic003G020300--Sobic006G245300 Sobic007G033400 Sobic007G033400 Sobic008G005600--Sobic007G033400 Sobic008G005600--Sobic002G394700 Sobic008G005600--Sobic005G135700 Sobic003G146200 Sobic003G146200 Sobic008G005600--Sobic003G146200 Sobic008G005600--Sobic007G027200 Sobic008G005600--Sobic006G166800 Sobic008G005600--Sobic005G088500 Sobic001G221400 Sobic001G221400 Sobic008G005600--Sobic001G221400 Sobic007G043800 Sobic007G043800 Sobic008G005600--Sobic007G043800 Sobic004G193800 Sobic004G193800 Sobic003G420201--Sobic004G193800 Sobic002G039600 Sobic002G039600 Sobic003G420201--Sobic002G039600 Sobic004G205500 Sobic004G205500 Sobic003G420201--Sobic004G205500 Sobic004G240900 Sobic004G240900 Sobic003G420201--Sobic004G240900 Sobic003G204000 Sobic003G204000 Sobic003G420201--Sobic003G204000 Sobic008G167300 Sobic008G167300 Sobic003G420201--Sobic008G167300 Sobic003G420201--Sobic006G139300 Sobic006G269600 Sobic006G269600 Sobic003G420201--Sobic006G269600 Sobic007G099500 Sobic007G099500 Sobic003G420201--Sobic007G099500 Sobic003G096300 Sobic003G096300 Sobic001G482300--Sobic003G096300 Sobic002G315000 Sobic002G315000 Sobic001G482300--Sobic002G315000 Sobic003G420800 Sobic003G420800 Sobic001G482300--Sobic003G420800 Sobic001G047200 Sobic001G047200 Sobic001G482300--Sobic001G047200 Sobic002G064400 Sobic002G064400 Sobic001G482300--Sobic002G064400 Sobic005G204100 Sobic005G204100 Sobic001G482300--Sobic005G204100 Sobic009G083300 Sobic009G083300 Sobic001G482300--Sobic009G083300 Sobic008G038200 Sobic008G038200 Sobic001G482300--Sobic008G038200 Sobic001G370000 Sobic001G370000 Sobic001G482300--Sobic001G370000
Octagon: transcription factors


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