Gene annotation
Transcriptome id Sobic.006G184100.1,Sobic.006G184100.2
Synonym Sb06g025840
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543)
dehydration response related protein, putative, expressed
UniProt A0A1B6PMR8 , A0A1B6PMP1
Pfam PF03141
Panther DB PTHR10108 PTHR10108:SF856
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008168; methyltransferase activity


Orthologs (automatic annotation)
TAIR AT4G00750 : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
RAP-DB (Rice) LOC_Os04g48230.1 : dehydration response related protein, putative, expressed
MaizeGDB (Corn) Zm00025a056763 , Zm00025a010164 , Zm00025a032303
Brachypodium KQJ84115 , KQK00747
Barley HORVU6Hr1G065360.12 , HORVU6Hr1G065360.10 , HORVU6Hr1G065360.11 , HORVU6Hr1G065360.14 , HORVU6Hr1G065360.15 , HORVU2Hr1G095070.3 , HORVU2Hr1G095070.2 , HORVU2Hr1G095070.1 , HORVU6Hr1G065360.9 , HORVU6Hr1G065360.1 , HORVU6Hr1G065360.2 , HORVU6Hr1G065360.3 , HORVU6Hr1G065360.4 , HORVU6Hr1G065360.5 , HORVU6Hr1G065360.6 , HORVU6Hr1G065360.7
Wheat TraesCS6B02G269400 , TraesCS6A02G256000 , TraesCS6D02G237200 , TraesCS2D02G397900 , TraesCS2B02G418400 , TraesCS2A02G400300 , TraesCS2A02G400300
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G184100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G033700 AIR9 protein, putative, expressed -
2 Sobic.002G377300 CAMK_CAMK_like.35 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
3 Sobic.008G190500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plasma membrane ATPase, putative, expressed K01535: PMA1, H+-transporting ATPase
4 Sobic.001G021500 CESA5 - cellulose synthase, expressed K10999: cellulose synthase A
5 Sobic.003G205300 DUF581 domain containing protein, expressed -
6 Sobic.001G099100 endoglucanase, putative, expressed K01179: endoglucanase
7 Sobic.003G347300 TBC domain containing protein, expressed -
8 Sobic.003G304800 OsRhmbd4 - Putative Rhomboid homologue, expressed -
9 Sobic.004G243400 copper methylamine oxidase precursor, putative, expressed K00276: AOC3, AOC2, primary-amine oxidase
10 Sobic.003G098500 - -
11 Sobic.010G135300 expressed protein -
12 Sobic.009G122900 alpha 1,3-xylosyltransferase, putative, expressed K11714: rhamnogalacturonan II specific xylosyltransferase
13 Sobic.003G051100 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
14 Sobic.009G167100 TBC domain containing protein, expressed -
15 Sobic.002G276600 endoglucanase, putative, expressed -
16 Sobic.003G005900 abscisic acid insensitive 8, putative, expressed -
17 Sobic.002G347900 GDP-fucose protein-O-fucosyltransferase 2, putative, expressed K03691: peptide-O-fucosyltransferase
18 Sobic.003G077500 expressed protein -
19 Sobic.007G172600 dihydroneopterin aldolase, putative, expressed K01633: 7,8-dihydroneopterin aldolase/epimerase/oxygenase
20 Sobic.003G098600 expressed protein -


Gene co-expression network
sample Sobic006G184100 Sobic006G184100 Sobic002G033700 Sobic002G033700 Sobic006G184100--Sobic002G033700 Sobic002G377300 Sobic002G377300 Sobic006G184100--Sobic002G377300 Sobic008G190500 Sobic008G190500 Sobic006G184100--Sobic008G190500 Sobic001G021500 Sobic001G021500 Sobic006G184100--Sobic001G021500 Sobic003G205300 Sobic003G205300 Sobic006G184100--Sobic003G205300 Sobic001G099100 Sobic001G099100 Sobic006G184100--Sobic001G099100 Sobic003G347300 Sobic003G347300 Sobic006G184100--Sobic003G347300 Sobic003G304800 Sobic003G304800 Sobic006G184100--Sobic003G304800 Sobic004G243400 Sobic004G243400 Sobic006G184100--Sobic004G243400 Sobic002G033700--Sobic003G347300 Sobic002G033700--Sobic006G184100 Sobic010G090500 Sobic010G090500 Sobic002G033700--Sobic010G090500 Sobic008G125100 Sobic008G125100 Sobic002G033700--Sobic008G125100 Sobic004G149800 Sobic004G149800 Sobic002G033700--Sobic004G149800 Sobic009G122900 Sobic009G122900 Sobic002G033700--Sobic009G122900 Sobic002G033700--Sobic001G021500 Sobic006G254500 Sobic006G254500 Sobic002G033700--Sobic006G254500 Sobic004G178400 Sobic004G178400 Sobic002G033700--Sobic004G178400 Sobic009G055900 Sobic009G055900 Sobic002G377300--Sobic009G055900 Sobic001G371700 Sobic001G371700 Sobic002G377300--Sobic001G371700 Sobic010G165100 Sobic010G165100 Sobic002G377300--Sobic010G165100 Sobic002G142500 Sobic002G142500 Sobic002G377300--Sobic002G142500 Sobic009G231100 Sobic009G231100 Sobic002G377300--Sobic009G231100 Sobic001G047200 Sobic001G047200 Sobic002G377300--Sobic001G047200 Sobic008G143600 Sobic008G143600 Sobic002G377300--Sobic008G143600 Sobic002G225000 Sobic002G225000 Sobic002G377300--Sobic002G225000 Sobic002G246000 Sobic002G246000 Sobic002G377300--Sobic002G246000 Sobic007G210900 Sobic007G210900 Sobic008G190500--Sobic007G210900 Sobic008G086200 Sobic008G086200 Sobic008G190500--Sobic008G086200 Sobic010G135300 Sobic010G135300 Sobic008G190500--Sobic010G135300 Sobic003G077500 Sobic003G077500 Sobic008G190500--Sobic003G077500 Sobic008G190500--Sobic001G021500 Sobic003G023400 Sobic003G023400 Sobic008G190500--Sobic003G023400 Sobic009G123500 Sobic009G123500 Sobic008G190500--Sobic009G123500 Sobic003G420800 Sobic003G420800 Sobic008G190500--Sobic003G420800 Sobic001G315400 Sobic001G315400 Sobic008G190500--Sobic001G315400 Sobic001G021500--Sobic004G243400 Sobic001G021500--Sobic002G377300 Sobic001G021500--Sobic009G055900 Sobic003G165800 Sobic003G165800 Sobic001G021500--Sobic003G165800 Sobic001G021500--Sobic008G190500 Sobic001G021500--Sobic003G347300 Sobic010G123300 Sobic010G123300 Sobic001G021500--Sobic010G123300 Sobic009G144200 Sobic009G144200 Sobic001G021500--Sobic009G144200 Sobic001G021500--Sobic007G210900 Sobic009G061000 Sobic009G061000 Sobic003G205300--Sobic009G061000 Sobic010G118300 Sobic010G118300 Sobic003G205300--Sobic010G118300 Sobic001G159800 Sobic001G159800 Sobic003G205300--Sobic001G159800 Sobic003G051100 Sobic003G051100 Sobic003G205300--Sobic003G051100 Sobic003G205300--Sobic002G033700 Sobic003G205300--Sobic006G184100 Sobic004G203500 Sobic004G203500 Sobic003G205300--Sobic004G203500 Sobic002G142700 Sobic002G142700 Sobic003G205300--Sobic002G142700 Sobic002G297600 Sobic002G297600 Sobic003G205300--Sobic002G297600 Sobic004G051300 Sobic004G051300 Sobic001G099100--Sobic004G051300 Sobic002G118700 Sobic002G118700 Sobic001G099100--Sobic002G118700 Sobic002G276600 Sobic002G276600 Sobic001G099100--Sobic002G276600 Sobic002G075500 Sobic002G075500 Sobic001G099100--Sobic002G075500 Sobic001G099100--Sobic010G090500 Sobic009G026101 Sobic009G026101 Sobic001G099100--Sobic009G026101 Sobic009G125900 Sobic009G125900 Sobic001G099100--Sobic009G125900 Sobic003G353400 Sobic003G353400 Sobic001G099100--Sobic003G353400 Sobic009G079100 Sobic009G079100 Sobic001G099100--Sobic009G079100 Sobic002G218700 Sobic002G218700 Sobic003G347300--Sobic002G218700 Sobic003G347300--Sobic001G021500 Sobic003G347300--Sobic002G033700 Sobic009G126000 Sobic009G126000 Sobic003G347300--Sobic009G126000 Sobic003G347300--Sobic006G254500 Sobic009G030300 Sobic009G030300 Sobic003G347300--Sobic009G030300 Sobic009G013700 Sobic009G013700 Sobic003G347300--Sobic009G013700 Sobic003G347300--Sobic009G123500 Sobic003G347300--Sobic008G086200 Sobic003G304800--Sobic009G122900 Sobic007G010200 Sobic007G010200 Sobic003G304800--Sobic007G010200 Sobic001G472100 Sobic001G472100 Sobic003G304800--Sobic001G472100 Sobic008G112100 Sobic008G112100 Sobic003G304800--Sobic008G112100 Sobic003G331000 Sobic003G331000 Sobic003G304800--Sobic003G331000 Sobic007G036800 Sobic007G036800 Sobic003G304800--Sobic007G036800 Sobic009G060400 Sobic009G060400 Sobic003G304800--Sobic009G060400 Sobic005G160200 Sobic005G160200 Sobic003G304800--Sobic005G160200 Sobic001G425200 Sobic001G425200 Sobic003G304800--Sobic001G425200 Sobic004G243400--Sobic001G021500 Sobic004G243400--Sobic009G055900 Sobic004G243400--Sobic009G144200 Sobic001G405000 Sobic001G405000 Sobic004G243400--Sobic001G405000 Sobic003G098600 Sobic003G098600 Sobic004G243400--Sobic003G098600 Sobic002G003200 Sobic002G003200 Sobic004G243400--Sobic002G003200 Sobic003G176200 Sobic003G176200 Sobic004G243400--Sobic003G176200 Sobic004G044100 Sobic004G044100 Sobic004G243400--Sobic004G044100 Sobic008G008500 Sobic008G008500 Sobic004G243400--Sobic008G008500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.