Gene annotation
Transcriptome id Sobic.008G005600.2
Synonym Sb08g000620
Functional annotation carotenoid synthesis regulator CarF, putative, expressed
UniProt A0A1B6PAJ4
Pfam PF10520
Panther DB PTHR24067 PTHR24067:SF41
NCBI CDD KOG3011; Ubiquitin-conjugating enzyme
KEGG Orthology K10704; ubiquitin-conjugating enzyme E2 variant
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G27030 : fatty acid desaturase A
RAP-DB (Rice) LOC_Os08g08850.1 : carotenoid synthesis regulator CarF, putative, expressed
MaizeGDB (Corn) Zm00025a054786
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G033400 plastocyanin-like domain containing protein, putative, expressed -
2 Sobic.002G394700 gibberellin receptor GID1L2, putative, expressed -
3 Sobic.005G135700 chalcone and stilbene synthases, putative, expressed -
4 Sobic.003G146200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@two-component response regulator, putative, expressed -
5 Sobic.007G027200 anthocyanidin 3-O-glucosyltransferase, putative, expressed -
6 Sobic.006G166800 plastocyanin-like domain containing protein, putative, expressed -
7 Sobic.005G088500 integral membrane protein DUF6 containing protein, expressed -
8 Sobic.001G221400 alcohol oxidase, putative, expressed K17756: long-chain-alcohol oxidase
9 Sobic.007G043800 expressed protein -
10 Sobic.001G510200 estradiol 17-beta-dehydrogenase 12, putative, expressed K10251: HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase
11 Sobic.002G363200 saccharopine dehydrogenase, putative, expressed -
12 Sobic.010G108200 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
13 Sobic.007G095000 cytochrome P450, putative, expressed -
14 Sobic.006G125600 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K10251: HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase
15 Sobic.003G071300 expressed protein K10703: HACD, PHS1, very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
16 Sobic.005G135400 chalcone synthase, putative, expressed -
17 Sobic.001G147650 - -
18 Sobic.005G135800 chalcone and stilbene synthases, putative, expressed -
19 Sobic.010G124500 estradiol 17-beta-dehydrogenase 12, putative, expressed K10251: HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase
20 Sobic.003G071100 expressed protein K10703: HACD, PHS1, very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase


Gene co-expression network
sample Sobic008G005600 Sobic008G005600 Sobic007G033400 Sobic007G033400 Sobic008G005600--Sobic007G033400 Sobic002G394700 Sobic002G394700 Sobic008G005600--Sobic002G394700 Sobic005G135700 Sobic005G135700 Sobic008G005600--Sobic005G135700 Sobic003G146200 Sobic003G146200 Sobic008G005600--Sobic003G146200 Sobic007G027200 Sobic007G027200 Sobic008G005600--Sobic007G027200 Sobic006G166800 Sobic006G166800 Sobic008G005600--Sobic006G166800 Sobic005G088500 Sobic005G088500 Sobic008G005600--Sobic005G088500 Sobic001G221400 Sobic001G221400 Sobic008G005600--Sobic001G221400 Sobic007G043800 Sobic007G043800 Sobic008G005600--Sobic007G043800 Sobic007G033400--Sobic008G005600 Sobic007G033400--Sobic001G221400 Sobic007G033400--Sobic003G146200 Sobic001G510200 Sobic001G510200 Sobic007G033400--Sobic001G510200 Sobic003G352800 Sobic003G352800 Sobic007G033400--Sobic003G352800 Sobic007G033400--Sobic006G166800 Sobic007G033400--Sobic007G027200 Sobic001G534532 Sobic001G534532 Sobic007G033400--Sobic001G534532 Sobic004G218700 Sobic004G218700 Sobic007G033400--Sobic004G218700 Sobic010G108200 Sobic010G108200 Sobic002G394700--Sobic010G108200 Sobic006G125600 Sobic006G125600 Sobic002G394700--Sobic006G125600 Sobic003G071300 Sobic003G071300 Sobic002G394700--Sobic003G071300 Sobic007G095000 Sobic007G095000 Sobic002G394700--Sobic007G095000 Sobic010G124500 Sobic010G124500 Sobic002G394700--Sobic010G124500 Sobic003G071100 Sobic003G071100 Sobic002G394700--Sobic003G071100 Sobic005G135800 Sobic005G135800 Sobic002G394700--Sobic005G135800 Sobic005G135400 Sobic005G135400 Sobic002G394700--Sobic005G135400 Sobic010G108600 Sobic010G108600 Sobic002G394700--Sobic010G108600 Sobic005G135700--Sobic005G088500 Sobic010G108301 Sobic010G108301 Sobic005G135700--Sobic010G108301 Sobic005G135700--Sobic002G394700 Sobic002G267000 Sobic002G267000 Sobic005G135700--Sobic002G267000 Sobic007G138800 Sobic007G138800 Sobic005G135700--Sobic007G138800 Sobic005G135700--Sobic010G108600 Sobic005G135700--Sobic010G108200 Sobic001G173100 Sobic001G173100 Sobic005G135700--Sobic001G173100 Sobic005G135700--Sobic006G125600 Sobic003G146200--Sobic010G108301 Sobic003G146200--Sobic007G138800 Sobic006G188100 Sobic006G188100 Sobic003G146200--Sobic006G188100 Sobic003G414100 Sobic003G414100 Sobic003G146200--Sobic003G414100 Sobic003G146200--Sobic002G267000 Sobic003G146200--Sobic006G166800 Sobic003G146200--Sobic001G173100 Sobic008G005400 Sobic008G005400 Sobic003G146200--Sobic008G005400 Sobic005G135000 Sobic005G135000 Sobic003G146200--Sobic005G135000 Sobic007G027200--Sobic006G166800 Sobic007G027200--Sobic001G510200 Sobic009G241600 Sobic009G241600 Sobic007G027200--Sobic009G241600 Sobic007G027200--Sobic002G394700 Sobic003G153400 Sobic003G153400 Sobic007G027200--Sobic003G153400 Sobic010G199700 Sobic010G199700 Sobic007G027200--Sobic010G199700 Sobic007G027200--Sobic003G352800 Sobic009G162800 Sobic009G162800 Sobic007G027200--Sobic009G162800 Sobic007G027200--Sobic007G043800 Sobic006G166800--Sobic007G027200 Sobic006G166800--Sobic009G162800 Sobic006G166800--Sobic001G510200 Sobic006G166800--Sobic003G352800 Sobic006G166800--Sobic003G153400 Sobic006G166800--Sobic002G394700 Sobic010G196400 Sobic010G196400 Sobic006G166800--Sobic010G196400 Sobic006G166800--Sobic007G043800 Sobic006G166800--Sobic009G241600 Sobic002G039400 Sobic002G039400 Sobic005G088500--Sobic002G039400 Sobic005G088500--Sobic005G135700 Sobic005G088500--Sobic002G394700 Sobic006G046500 Sobic006G046500 Sobic005G088500--Sobic006G046500 Sobic005G088500--Sobic010G108200 Sobic009G109850 Sobic009G109850 Sobic005G088500--Sobic009G109850 Sobic005G088500--Sobic001G510200 Sobic005G088500--Sobic006G125600 Sobic005G088500--Sobic003G071300 Sobic001G221400--Sobic001G510200 Sobic007G068700 Sobic007G068700 Sobic001G221400--Sobic007G068700 Sobic008G008200 Sobic008G008200 Sobic001G221400--Sobic008G008200 Sobic004G167000 Sobic004G167000 Sobic001G221400--Sobic004G167000 Sobic008G087300 Sobic008G087300 Sobic001G221400--Sobic008G087300 Sobic009G239800 Sobic009G239800 Sobic001G221400--Sobic009G239800 Sobic010G180000 Sobic010G180000 Sobic001G221400--Sobic010G180000 Sobic001G266900 Sobic001G266900 Sobic001G221400--Sobic001G266900 Sobic010G195800 Sobic010G195800 Sobic001G221400--Sobic010G195800 Sobic007G043800--Sobic002G394700 Sobic007G043800--Sobic006G125600 Sobic007G043800--Sobic007G095000 Sobic007G043800--Sobic003G071300 Sobic007G043800--Sobic010G108200 Sobic007G043800--Sobic005G135400 Sobic007G043800--Sobic010G124500 Sobic007G043800--Sobic003G071100 Sobic007G043800--Sobic005G135800
Octagon: transcription factors


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