Gene annotation
Transcriptome id Sobic.008G173000.1
Synonym Sb08g021770, PDH-E1BETA
Functional annotation transketolase, putative, expressed
UniProt C5YSC6
Pfam PF02780 PF02779
Panther DB PTHR11624 PTHR11624:SF76
NCBI CDD -
KEGG Orthology K00162; PDHB, pyruvate dehydrogenase E1 component beta subunit
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT2G34590 : Transketolase family protein
RAP-DB (Rice) LOC_Os12g42230.1 : transketolase, putative, expressed
MaizeGDB (Corn) Zm00025a004716
Brachypodium PNT62303 , PNT62305 , PNT62304 , KQJ85753 , KQJ85754 , KQK13985
Barley HORVU5Hr1G092920.7 , HORVU5Hr1G092920.6 , HORVU5Hr1G092920.5 , HORVU5Hr1G092920.4 , HORVU5Hr1G092920.3 , HORVU5Hr1G092920.2 , HORVU5Hr1G092920.1 , HORVU5Hr1G092920.9 , HORVU5Hr1G092920.19 , HORVU5Hr1G092920.18 , HORVU5Hr1G092920.17 , HORVU5Hr1G092920.16 , HORVU5Hr1G092920.15 , HORVU5Hr1G092920.14 , HORVU5Hr1G092920.13 , HORVU5Hr1G092920.12 , HORVU5Hr1G092920.11 , HORVU5Hr1G092920.10 , HORVU0Hr1G009910.8 , HORVU0Hr1G009910.7 , HORVU0Hr1G009910.6 , HORVU0Hr1G009910.5 , HORVU0Hr1G009910.4 , HORVU0Hr1G009910.3 , HORVU0Hr1G009910.2 , HORVU0Hr1G009910.1
Wheat TraesCS5B02G376400 , TraesCS5B02G030400 , TraesCS5A02G030800 , TraesCS5A02G374500 , TraesCS5D02G039000 , TraesCS5D02G039000 , TraesCS5D02G384100
Populus PNT40964 , PNS95751 , PNS95752


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cDNA sequences
Sobic.008G173000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G226100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
2 Sobic.010G012600 expressed protein -
3 Sobic.006G252100 mediator of RNA polymerase II transcription subunit 7, putative, expressed K15148: mediator of RNA polymerase II transcription subunit 7
4 Sobic.001G296400 palmitoyl-protein thioesterase 1 precursor, putative, expressed K01074: palmitoyl-protein thioesterase
5 Sobic.004G185600 expressed protein -
6 Sobic.010G251100 - K03257: translation initiation factor 4A
7 Sobic.001G263000 membrane associated DUF588 domain containing protein, putative, expressed -
8 Sobic.003G045400 DNA-directed RNA polymerase II subunit RPB7, putative, expressed K03015: RPB7, DNA-directed RNA polymerase II subunit RPB7
9 Sobic.006G216000 DAG protein, chloroplast precursor, putative, expressed -
10 Sobic.006G097700 mitochondrial carrier protein, putative, expressed K15112: SLC25A27, solute carrier family 25 (mitochondrial uncoupling protein), member 27
11 Sobic.003G223500 WD domain, G-beta repeat domain containing protein, expressed K14299: nucleoporin SEH1
12 Sobic.007G088900 expressed protein -
13 Sobic.004G011000 expressed protein K11883: RNA-binding protein NOB1
14 Sobic.009G001100 expressed protein -
15 Sobic.003G119400 PUR ALPHA-1, putative, expressed -
16 Sobic.009G193850 - -
17 Sobic.002G133100 prephenate dehydratase domain containing protein, expressed K05359: ADT, arogenate/prephenate dehydratase
18 Sobic.001G023400 chloroplast protein import component Toc159, putative, expressed -
19 Sobic.009G133400 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
20 Sobic.003G380400 expressed protein -


Gene co-expression network
sample Sobic008G173000 Sobic008G173000 Sobic001G226100 Sobic001G226100 Sobic008G173000--Sobic001G226100 Sobic010G012600 Sobic010G012600 Sobic008G173000--Sobic010G012600 Sobic006G252100 Sobic006G252100 Sobic008G173000--Sobic006G252100 Sobic001G296400 Sobic001G296400 Sobic008G173000--Sobic001G296400 Sobic004G185600 Sobic004G185600 Sobic008G173000--Sobic004G185600 Sobic010G251100 Sobic010G251100 Sobic008G173000--Sobic010G251100 Sobic001G263000 Sobic001G263000 Sobic008G173000--Sobic001G263000 Sobic003G045400 Sobic003G045400 Sobic008G173000--Sobic003G045400 Sobic006G216000 Sobic006G216000 Sobic008G173000--Sobic006G216000 Sobic001G226100--Sobic010G251100 Sobic001G402300 Sobic001G402300 Sobic001G226100--Sobic001G402300 Sobic004G141700 Sobic004G141700 Sobic001G226100--Sobic004G141700 Sobic009G232400 Sobic009G232400 Sobic001G226100--Sobic009G232400 Sobic002G306400 Sobic002G306400 Sobic001G226100--Sobic002G306400 Sobic007G118000 Sobic007G118000 Sobic001G226100--Sobic007G118000 Sobic001G226100--Sobic006G252100 Sobic001G512600 Sobic001G512600 Sobic001G226100--Sobic001G512600 Sobic001G054200 Sobic001G054200 Sobic001G226100--Sobic001G054200 Sobic010G012600--Sobic010G251100 Sobic003G024800 Sobic003G024800 Sobic010G012600--Sobic003G024800 Sobic010G012600--Sobic001G512600 Sobic006G242300 Sobic006G242300 Sobic010G012600--Sobic006G242300 Sobic004G057800 Sobic004G057800 Sobic010G012600--Sobic004G057800 Sobic008G142700 Sobic008G142700 Sobic010G012600--Sobic008G142700 Sobic001G080000 Sobic001G080000 Sobic010G012600--Sobic001G080000 Sobic007G205000 Sobic007G205000 Sobic010G012600--Sobic007G205000 Sobic001G309100 Sobic001G309100 Sobic010G012600--Sobic001G309100 Sobic002G268400 Sobic002G268400 Sobic006G252100--Sobic002G268400 Sobic001G152000 Sobic001G152000 Sobic006G252100--Sobic001G152000 Sobic009G033900 Sobic009G033900 Sobic006G252100--Sobic009G033900 Sobic006G252100--Sobic006G216000 Sobic003G220700 Sobic003G220700 Sobic006G252100--Sobic003G220700 Sobic006G094600 Sobic006G094600 Sobic006G252100--Sobic006G094600 Sobic006G252100--Sobic001G226100 Sobic004G074300 Sobic004G074300 Sobic006G252100--Sobic004G074300 Sobic001G370300 Sobic001G370300 Sobic006G252100--Sobic001G370300 Sobic003G071600 Sobic003G071600 Sobic001G296400--Sobic003G071600 Sobic004G175600 Sobic004G175600 Sobic001G296400--Sobic004G175600 Sobic004G208600 Sobic004G208600 Sobic001G296400--Sobic004G208600 Sobic001G296400--Sobic006G216000 Sobic001G063800 Sobic001G063800 Sobic001G296400--Sobic001G063800 Sobic003G420900 Sobic003G420900 Sobic001G296400--Sobic003G420900 Sobic007G171950 Sobic007G171950 Sobic001G296400--Sobic007G171950 Sobic001G296400--Sobic008G173000 Sobic001G384800 Sobic001G384800 Sobic001G296400--Sobic001G384800 Sobic010G249300 Sobic010G249300 Sobic004G185600--Sobic010G249300 Sobic001G201400 Sobic001G201400 Sobic004G185600--Sobic001G201400 Sobic010G146600 Sobic010G146600 Sobic004G185600--Sobic010G146600 Sobic001G281600 Sobic001G281600 Sobic004G185600--Sobic001G281600 Sobic009G050900 Sobic009G050900 Sobic004G185600--Sobic009G050900 Sobic001G291100 Sobic001G291100 Sobic004G185600--Sobic001G291100 Sobic002G378200 Sobic002G378200 Sobic004G185600--Sobic002G378200 Sobic008G004400 Sobic008G004400 Sobic004G185600--Sobic008G004400 Sobic001G142100 Sobic001G142100 Sobic004G185600--Sobic001G142100 Sobic010G251100--Sobic001G226100 Sobic010G251100--Sobic001G402300 Sobic003G226500 Sobic003G226500 Sobic010G251100--Sobic003G226500 Sobic010G251100--Sobic009G232400 Sobic010G251100--Sobic007G205000 Sobic010G251100--Sobic008G004400 Sobic006G278700 Sobic006G278700 Sobic010G251100--Sobic006G278700 Sobic010G251100--Sobic010G012600 Sobic010G193800 Sobic010G193800 Sobic010G251100--Sobic010G193800 Sobic009G004600 Sobic009G004600 Sobic001G263000--Sobic009G004600 Sobic006G244700 Sobic006G244700 Sobic001G263000--Sobic006G244700 Sobic001G263000--Sobic009G033900 Sobic002G209400 Sobic002G209400 Sobic001G263000--Sobic002G209400 Sobic001G263000--Sobic002G268400 Sobic002G039000 Sobic002G039000 Sobic001G263000--Sobic002G039000 Sobic001G263000--Sobic004G074300 Sobic004G356900 Sobic004G356900 Sobic001G263000--Sobic004G356900 Sobic010G057900 Sobic010G057900 Sobic001G263000--Sobic010G057900 Sobic001G467000 Sobic001G467000 Sobic003G045400--Sobic001G467000 Sobic003G045400--Sobic006G242300 Sobic010G211300 Sobic010G211300 Sobic003G045400--Sobic010G211300 Sobic008G139700 Sobic008G139700 Sobic003G045400--Sobic008G139700 Sobic002G313500 Sobic002G313500 Sobic003G045400--Sobic002G313500 Sobic001G307900 Sobic001G307900 Sobic003G045400--Sobic001G307900 Sobic004G072800 Sobic004G072800 Sobic003G045400--Sobic004G072800 Sobic009G140700 Sobic009G140700 Sobic003G045400--Sobic009G140700 Sobic001G143500 Sobic001G143500 Sobic003G045400--Sobic001G143500 Sobic004G291400 Sobic004G291400 Sobic006G216000--Sobic004G291400 Sobic002G253100 Sobic002G253100 Sobic006G216000--Sobic002G253100 Sobic003G119400 Sobic003G119400 Sobic006G216000--Sobic003G119400 Sobic006G216000--Sobic006G252100 Sobic002G083400 Sobic002G083400 Sobic006G216000--Sobic002G083400 Sobic006G216000--Sobic001G152000 Sobic006G216000--Sobic001G296400 Sobic001G471600 Sobic001G471600 Sobic006G216000--Sobic001G471600 Sobic001G335201 Sobic001G335201 Sobic006G216000--Sobic001G335201
Octagon: transcription factors


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