Gene annotation
Transcriptome id Sobic.003G298400.1
Synonym Sb03g034840
Functional annotation expressed protein
UniProt C5XK62
Pfam PF02151 PF13474
Panther DB PTHR34957 PTHR34957:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G09250 : Nuclear transport factor 2 (NTF2) family protein
RAP-DB (Rice) LOC_Os01g54960.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G437200 ATP-dependent Clp protease ATP-binding subunit, putative, expressed -
2 Sobic.009G131600 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
3 Sobic.007G116100 thioredoxin, putative, expressed -
4 Sobic.001G445200 expressed protein -
5 Sobic.001G424300 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K08081: tropinone reductase I
6 Sobic.006G237100 amidase, putative, expressed K02433: gatA, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A
7 Sobic.002G156100 phosphoglycerate mutase, putative, expressed -
8 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
9 Sobic.010G073700 chaperonin, putative, expressed K04078: groES, chaperonin GroES
10 Sobic.003G162800 expressed protein -
11 Sobic.003G128400 OsClp1 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
12 Sobic.003G310100 ABC transporter, ATP-binding protein, putative, expressed -
13 Sobic.001G293300 chaperonin, putative, expressed K04078: groES, chaperonin GroES
14 Sobic.001G281500 OsClp11 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
15 Sobic.006G076601 - -
16 Sobic.001G305700 Mur ligase family protein, putative, expressed -
17 Sobic.010G027200 OsClp9 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
18 Sobic.004G214400 tic20, putative, expressed -
19 Sobic.002G363500 RNA methyltransferase, TrmH family protein, putative, expressed -
20 Sobic.002G404900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA pseudouridine synthase, putative, expressed -


Gene co-expression network
sample Sobic003G298400 Sobic003G298400 Sobic001G437200 Sobic001G437200 Sobic003G298400--Sobic001G437200 Sobic009G131600 Sobic009G131600 Sobic003G298400--Sobic009G131600 Sobic007G116100 Sobic007G116100 Sobic003G298400--Sobic007G116100 Sobic001G445200 Sobic001G445200 Sobic003G298400--Sobic001G445200 Sobic001G424300 Sobic001G424300 Sobic003G298400--Sobic001G424300 Sobic006G237100 Sobic006G237100 Sobic003G298400--Sobic006G237100 Sobic002G156100 Sobic002G156100 Sobic003G298400--Sobic002G156100 Sobic001G375000 Sobic001G375000 Sobic003G298400--Sobic001G375000 Sobic010G073700 Sobic010G073700 Sobic003G298400--Sobic010G073700 Sobic001G437200--Sobic003G298400 Sobic001G437200--Sobic006G237100 Sobic003G310100 Sobic003G310100 Sobic001G437200--Sobic003G310100 Sobic002G404900 Sobic002G404900 Sobic001G437200--Sobic002G404900 Sobic001G437200--Sobic009G131600 Sobic001G437200--Sobic001G424300 Sobic001G437200--Sobic001G445200 Sobic003G286300 Sobic003G286300 Sobic001G437200--Sobic003G286300 Sobic001G161400 Sobic001G161400 Sobic001G437200--Sobic001G161400 Sobic006G055800 Sobic006G055800 Sobic009G131600--Sobic006G055800 Sobic007G171800 Sobic007G171800 Sobic009G131600--Sobic007G171800 Sobic010G035200 Sobic010G035200 Sobic009G131600--Sobic010G035200 Sobic003G324700 Sobic003G324700 Sobic009G131600--Sobic003G324700 Sobic002G131700 Sobic002G131700 Sobic009G131600--Sobic002G131700 Sobic003G128400 Sobic003G128400 Sobic009G131600--Sobic003G128400 Sobic007G090400 Sobic007G090400 Sobic009G131600--Sobic007G090400 Sobic005G002900 Sobic005G002900 Sobic009G131600--Sobic005G002900 Sobic002G056800 Sobic002G056800 Sobic009G131600--Sobic002G056800 Sobic010G027200 Sobic010G027200 Sobic007G116100--Sobic010G027200 Sobic001G281500 Sobic001G281500 Sobic007G116100--Sobic001G281500 Sobic002G140000 Sobic002G140000 Sobic007G116100--Sobic002G140000 Sobic006G263800 Sobic006G263800 Sobic007G116100--Sobic006G263800 Sobic001G099000 Sobic001G099000 Sobic007G116100--Sobic001G099000 Sobic007G015300 Sobic007G015300 Sobic007G116100--Sobic007G015300 Sobic007G116100--Sobic006G237100 Sobic004G338300 Sobic004G338300 Sobic007G116100--Sobic004G338300 Sobic005G022800 Sobic005G022800 Sobic007G116100--Sobic005G022800 Sobic001G445200--Sobic006G237100 Sobic005G009300 Sobic005G009300 Sobic001G445200--Sobic005G009300 Sobic001G445200--Sobic001G437200 Sobic001G445200--Sobic001G281500 Sobic001G445200--Sobic002G404900 Sobic001G445200--Sobic003G310100 Sobic001G445200--Sobic002G156100 Sobic002G409900 Sobic002G409900 Sobic001G445200--Sobic002G409900 Sobic003G162800 Sobic003G162800 Sobic001G445200--Sobic003G162800 Sobic001G424300--Sobic003G310100 Sobic001G489800 Sobic001G489800 Sobic001G424300--Sobic001G489800 Sobic001G424300--Sobic003G128400 Sobic001G424300--Sobic009G131600 Sobic001G424300--Sobic001G281500 Sobic001G424300--Sobic005G002900 Sobic001G424300--Sobic006G055800 Sobic001G424300--Sobic002G156100 Sobic001G424300--Sobic001G437200 Sobic006G237100--Sobic001G281500 Sobic006G237100--Sobic010G027200 Sobic006G237100--Sobic001G375000 Sobic006G237100--Sobic002G404900 Sobic006G237100--Sobic002G140000 Sobic006G237100--Sobic001G161400 Sobic006G237100--Sobic001G437200 Sobic006G237100--Sobic007G116100 Sobic006G237100--Sobic003G310100 Sobic002G156100--Sobic003G162800 Sobic002G156100--Sobic001G375000 Sobic002G156100--Sobic003G128400 Sobic001G382800 Sobic001G382800 Sobic002G156100--Sobic001G382800 Sobic003G045300 Sobic003G045300 Sobic002G156100--Sobic003G045300 Sobic010G255100 Sobic010G255100 Sobic002G156100--Sobic010G255100 Sobic008G067100 Sobic008G067100 Sobic002G156100--Sobic008G067100 Sobic005G014700 Sobic005G014700 Sobic002G156100--Sobic005G014700 Sobic002G156100--Sobic001G424300 Sobic001G375000--Sobic003G128400 Sobic001G375000--Sobic003G162800 Sobic006G088000 Sobic006G088000 Sobic001G375000--Sobic006G088000 Sobic004G003900 Sobic004G003900 Sobic001G375000--Sobic004G003900 Sobic001G375000--Sobic003G045300 Sobic001G375000--Sobic010G027200 Sobic001G448600 Sobic001G448600 Sobic001G375000--Sobic001G448600 Sobic001G375000--Sobic006G237100 Sobic001G375000--Sobic002G156100 Sobic010G073700--Sobic003G298400 Sobic010G073700--Sobic001G437200 Sobic010G073700--Sobic007G116100 Sobic003G327200 Sobic003G327200 Sobic010G073700--Sobic003G327200 Sobic001G395300 Sobic001G395300 Sobic010G073700--Sobic001G395300 Sobic010G073700--Sobic006G237100 Sobic010G073700--Sobic003G162800 Sobic002G363500 Sobic002G363500 Sobic010G073700--Sobic002G363500 Sobic009G137000 Sobic009G137000 Sobic010G073700--Sobic009G137000
Octagon: transcription factors


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