Gene annotation
Transcriptome id Sobic.001G305700.1
Synonym ATMURE, Sb01g029770, PDE316, MURE
Functional annotation Mur ligase family protein, putative, expressed
UniProt C5WTD4
Pfam PF02875 PF08245
Panther DB PTHR23135 PTHR23135:SF16
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016874; ligase activity GO:0009058biosynthetic process GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT1G63680 : acid-amino acid ligases;ligases;ATP binding;ATP binding;ligases
RAP-DB (Rice) LOC_Os10g40130.1 : Mur ligase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a052017
Brachypodium KQJ97719 , KQJ97721 , KQJ97720
Barley HORVU1Hr1G053310.7 , HORVU1Hr1G053310.6 , HORVU1Hr1G053310.5 , HORVU1Hr1G053310.4 , HORVU1Hr1G053310.3 , HORVU1Hr1G053310.2 , HORVU1Hr1G053310.8
Wheat TraesCS1D02G211600 , TraesCS1B02G222400 , TraesCS1A02G208400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G128400 OsClp1 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
2 Sobic.009G131600 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
3 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
4 Sobic.003G225100 uroporphyrinogen decarboxylase, putative, expressed K01599: hemE, uroporphyrinogen decarboxylase
5 Sobic.008G130900 ribosomal protein S6, putative, expressed -
6 Sobic.003G085000 sufB/sufD domain containing protein, putative, expressed K09015: Fe-S cluster assembly protein SufD
7 Sobic.002G013700 PPR2, putative, expressed -
8 Sobic.006G237100 amidase, putative, expressed K02433: gatA, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A
9 Sobic.007G101300 expressed protein -
10 Sobic.005G110481 - -
11 Sobic.001G281500 OsClp11 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
12 Sobic.001G437200 ATP-dependent Clp protease ATP-binding subunit, putative, expressed -
13 Sobic.009G042200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsDegp6 - Putative Deg protease homologue, expressed -
14 Sobic.006G055800 mttA/Hcf106 family protein, putative, expressed -
15 Sobic.002G297400 tetratricopeptide repeat domain containing protein, expressed -
16 Sobic.007G171800 RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
17 Sobic.002G056800 YGGT family protein, putative, expressed -
18 Sobic.003G045300 cobalt ion transporter, putative, expressed -
19 Sobic.002G156100 phosphoglycerate mutase, putative, expressed -
20 Sobic.003G310100 ABC transporter, ATP-binding protein, putative, expressed -


Gene co-expression network
sample Sobic001G305700 Sobic001G305700 Sobic003G128400 Sobic003G128400 Sobic001G305700--Sobic003G128400 Sobic009G131600 Sobic009G131600 Sobic001G305700--Sobic009G131600 Sobic001G375000 Sobic001G375000 Sobic001G305700--Sobic001G375000 Sobic003G225100 Sobic003G225100 Sobic001G305700--Sobic003G225100 Sobic008G130900 Sobic008G130900 Sobic001G305700--Sobic008G130900 Sobic003G085000 Sobic003G085000 Sobic001G305700--Sobic003G085000 Sobic002G013700 Sobic002G013700 Sobic001G305700--Sobic002G013700 Sobic006G237100 Sobic006G237100 Sobic001G305700--Sobic006G237100 Sobic007G101300 Sobic007G101300 Sobic001G305700--Sobic007G101300 Sobic003G128400--Sobic001G375000 Sobic003G128400--Sobic007G101300 Sobic003G045300 Sobic003G045300 Sobic003G128400--Sobic003G045300 Sobic005G184300 Sobic005G184300 Sobic003G128400--Sobic005G184300 Sobic004G003900 Sobic004G003900 Sobic003G128400--Sobic004G003900 Sobic006G055800 Sobic006G055800 Sobic003G128400--Sobic006G055800 Sobic002G156100 Sobic002G156100 Sobic003G128400--Sobic002G156100 Sobic002G297400 Sobic002G297400 Sobic003G128400--Sobic002G297400 Sobic010G255100 Sobic010G255100 Sobic003G128400--Sobic010G255100 Sobic009G131600--Sobic006G055800 Sobic007G171800 Sobic007G171800 Sobic009G131600--Sobic007G171800 Sobic010G035200 Sobic010G035200 Sobic009G131600--Sobic010G035200 Sobic003G324700 Sobic003G324700 Sobic009G131600--Sobic003G324700 Sobic002G131700 Sobic002G131700 Sobic009G131600--Sobic002G131700 Sobic009G131600--Sobic003G128400 Sobic007G090400 Sobic007G090400 Sobic009G131600--Sobic007G090400 Sobic005G002900 Sobic005G002900 Sobic009G131600--Sobic005G002900 Sobic002G056800 Sobic002G056800 Sobic009G131600--Sobic002G056800 Sobic001G375000--Sobic003G128400 Sobic003G162800 Sobic003G162800 Sobic001G375000--Sobic003G162800 Sobic006G088000 Sobic006G088000 Sobic001G375000--Sobic006G088000 Sobic001G375000--Sobic004G003900 Sobic001G375000--Sobic003G045300 Sobic010G027200 Sobic010G027200 Sobic001G375000--Sobic010G027200 Sobic001G448600 Sobic001G448600 Sobic001G375000--Sobic001G448600 Sobic001G375000--Sobic006G237100 Sobic001G375000--Sobic002G156100 Sobic001G122400 Sobic001G122400 Sobic003G225100--Sobic001G122400 Sobic003G225100--Sobic007G171800 Sobic005G110481 Sobic005G110481 Sobic003G225100--Sobic005G110481 Sobic010G095200 Sobic010G095200 Sobic003G225100--Sobic010G095200 Sobic004G335800 Sobic004G335800 Sobic003G225100--Sobic004G335800 Sobic007G013400 Sobic007G013400 Sobic003G225100--Sobic007G013400 Sobic002G251400 Sobic002G251400 Sobic003G225100--Sobic002G251400 Sobic003G386300 Sobic003G386300 Sobic003G225100--Sobic003G386300 Sobic001G527100 Sobic001G527100 Sobic003G225100--Sobic001G527100 Sobic008G130900--Sobic001G375000 Sobic008G130900--Sobic006G055800 Sobic008G130900--Sobic003G128400 Sobic008G130900--Sobic005G002900 Sobic008G130900--Sobic009G131600 Sobic003G432500 Sobic003G432500 Sobic008G130900--Sobic003G432500 Sobic002G181000 Sobic002G181000 Sobic008G130900--Sobic002G181000 Sobic001G083100 Sobic001G083100 Sobic008G130900--Sobic001G083100 Sobic008G130900--Sobic002G131700 Sobic006G256600 Sobic006G256600 Sobic003G085000--Sobic006G256600 Sobic001G291900 Sobic001G291900 Sobic003G085000--Sobic001G291900 Sobic003G085000--Sobic006G055800 Sobic003G085000--Sobic010G255100 Sobic004G336000 Sobic004G336000 Sobic003G085000--Sobic004G336000 Sobic001G531400 Sobic001G531400 Sobic003G085000--Sobic001G531400 Sobic003G085000--Sobic005G002900 Sobic001G104800 Sobic001G104800 Sobic003G085000--Sobic001G104800 Sobic004G065300 Sobic004G065300 Sobic003G085000--Sobic004G065300 Sobic002G013700--Sobic005G110481 Sobic002G013700--Sobic007G171800 Sobic010G011200 Sobic010G011200 Sobic002G013700--Sobic010G011200 Sobic002G013700--Sobic007G101300 Sobic002G013700--Sobic002G251400 Sobic009G104700 Sobic009G104700 Sobic002G013700--Sobic009G104700 Sobic002G158800 Sobic002G158800 Sobic002G013700--Sobic002G158800 Sobic001G148200 Sobic001G148200 Sobic002G013700--Sobic001G148200 Sobic009G042200 Sobic009G042200 Sobic002G013700--Sobic009G042200 Sobic001G281500 Sobic001G281500 Sobic006G237100--Sobic001G281500 Sobic006G237100--Sobic010G027200 Sobic006G237100--Sobic001G375000 Sobic002G404900 Sobic002G404900 Sobic006G237100--Sobic002G404900 Sobic002G140000 Sobic002G140000 Sobic006G237100--Sobic002G140000 Sobic001G161400 Sobic001G161400 Sobic006G237100--Sobic001G161400 Sobic001G437200 Sobic001G437200 Sobic006G237100--Sobic001G437200 Sobic007G116100 Sobic007G116100 Sobic006G237100--Sobic007G116100 Sobic003G310100 Sobic003G310100 Sobic006G237100--Sobic003G310100 Sobic007G101300--Sobic005G184300 Sobic007G101300--Sobic005G110481 Sobic007G101300--Sobic003G128400 Sobic007G101300--Sobic002G013700 Sobic007G101300--Sobic009G104700 Sobic007G101300--Sobic001G375000 Sobic007G101300--Sobic001G281500 Sobic001G099000 Sobic001G099000 Sobic007G101300--Sobic001G099000 Sobic007G101300--Sobic010G027200
Octagon: transcription factors


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