Gene annotation
Transcriptome id Sobic.010G073700.1,Sobic.010G073700.2
Synonym CHCPN10, CPN20, ATCPN21, CPN21, Sb10g006450, CPN10
Functional annotation chaperonin, putative, expressed
UniProt A0A194YHW1 , A0A194YHU3
Pfam PF00166
Panther DB PTHR10772 PTHR10772:SF10
NCBI CDD KOG1641; Mitochondrial chaperonin
KEGG Orthology K04078; groES, chaperonin GroES
Gene Ontology GO:0006457; protein folding GO:0005737cytoplasm


Orthologs (automatic annotation)
TAIR AT5G20720 : chaperonin 20
RAP-DB (Rice) LOC_Os06g09679.1 : chaperonin, putative, expressed
MaizeGDB (Corn) Zm00025a049673
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.010G073700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G298400 expressed protein -
2 Sobic.001G437200 ATP-dependent Clp protease ATP-binding subunit, putative, expressed -
3 Sobic.007G116100 thioredoxin, putative, expressed -
4 Sobic.003G327200 GHMP kinases ATP-binding protein, putative, expressed K00919: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
5 Sobic.001G395300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsClp4 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
6 Sobic.006G237100 amidase, putative, expressed K02433: gatA, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A
7 Sobic.003G162800 expressed protein -
8 Sobic.002G363500 RNA methyltransferase, TrmH family protein, putative, expressed -
9 Sobic.009G137000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monooxygenase, putative, expressed -
10 Sobic.001G281500 OsClp11 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
11 Sobic.002G156200 DUF565 domain containing protein, putative, expressed -
12 Sobic.010G027200 OsClp9 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
13 Sobic.002G404900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA pseudouridine synthase, putative, expressed -
14 Sobic.001G445200 expressed protein -
15 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
16 Sobic.001G010800 methionyl-tRNA synthetase, putative, expressed -
17 Sobic.004G214400 tic20, putative, expressed -
18 Sobic.001G424300 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K08081: tropinone reductase I
19 Sobic.009G029700 aminotransferase, putative, expressed K00818: E2.6.1.11, acetylornithine aminotransferase
20 Sobic.003G324100 haloacid dehalogenase, putative, expressed K01094: phosphatidylglycerophosphatase GEP4


Gene co-expression network
sample Sobic010G073700 Sobic010G073700 Sobic003G298400 Sobic003G298400 Sobic010G073700--Sobic003G298400 Sobic001G437200 Sobic001G437200 Sobic010G073700--Sobic001G437200 Sobic007G116100 Sobic007G116100 Sobic010G073700--Sobic007G116100 Sobic003G327200 Sobic003G327200 Sobic010G073700--Sobic003G327200 Sobic001G395300 Sobic001G395300 Sobic010G073700--Sobic001G395300 Sobic006G237100 Sobic006G237100 Sobic010G073700--Sobic006G237100 Sobic003G162800 Sobic003G162800 Sobic010G073700--Sobic003G162800 Sobic002G363500 Sobic002G363500 Sobic010G073700--Sobic002G363500 Sobic009G137000 Sobic009G137000 Sobic010G073700--Sobic009G137000 Sobic003G298400--Sobic001G437200 Sobic009G131600 Sobic009G131600 Sobic003G298400--Sobic009G131600 Sobic003G298400--Sobic007G116100 Sobic001G445200 Sobic001G445200 Sobic003G298400--Sobic001G445200 Sobic001G424300 Sobic001G424300 Sobic003G298400--Sobic001G424300 Sobic003G298400--Sobic006G237100 Sobic002G156100 Sobic002G156100 Sobic003G298400--Sobic002G156100 Sobic001G375000 Sobic001G375000 Sobic003G298400--Sobic001G375000 Sobic003G298400--Sobic010G073700 Sobic001G437200--Sobic003G298400 Sobic001G437200--Sobic006G237100 Sobic003G310100 Sobic003G310100 Sobic001G437200--Sobic003G310100 Sobic002G404900 Sobic002G404900 Sobic001G437200--Sobic002G404900 Sobic001G437200--Sobic009G131600 Sobic001G437200--Sobic001G424300 Sobic001G437200--Sobic001G445200 Sobic003G286300 Sobic003G286300 Sobic001G437200--Sobic003G286300 Sobic001G161400 Sobic001G161400 Sobic001G437200--Sobic001G161400 Sobic010G027200 Sobic010G027200 Sobic007G116100--Sobic010G027200 Sobic001G281500 Sobic001G281500 Sobic007G116100--Sobic001G281500 Sobic002G140000 Sobic002G140000 Sobic007G116100--Sobic002G140000 Sobic006G263800 Sobic006G263800 Sobic007G116100--Sobic006G263800 Sobic001G099000 Sobic001G099000 Sobic007G116100--Sobic001G099000 Sobic007G015300 Sobic007G015300 Sobic007G116100--Sobic007G015300 Sobic007G116100--Sobic006G237100 Sobic004G338300 Sobic004G338300 Sobic007G116100--Sobic004G338300 Sobic005G022800 Sobic005G022800 Sobic007G116100--Sobic005G022800 Sobic003G327200--Sobic003G162800 Sobic003G327200--Sobic001G375000 Sobic001G003900 Sobic001G003900 Sobic003G327200--Sobic001G003900 Sobic004G263200 Sobic004G263200 Sobic003G327200--Sobic004G263200 Sobic003G128400 Sobic003G128400 Sobic003G327200--Sobic003G128400 Sobic001G514100 Sobic001G514100 Sobic003G327200--Sobic001G514100 Sobic003G327200--Sobic007G116100 Sobic003G327200--Sobic010G027200 Sobic001G022500 Sobic001G022500 Sobic003G327200--Sobic001G022500 Sobic001G395300--Sobic009G137000 Sobic001G395300--Sobic002G404900 Sobic001G228300 Sobic001G228300 Sobic001G395300--Sobic001G228300 Sobic001G395300--Sobic006G237100 Sobic001G395300--Sobic006G263800 Sobic001G395300--Sobic002G140000 Sobic006G204100 Sobic006G204100 Sobic001G395300--Sobic006G204100 Sobic001G395300--Sobic007G116100 Sobic001G395300--Sobic010G027200 Sobic006G237100--Sobic001G281500 Sobic006G237100--Sobic010G027200 Sobic006G237100--Sobic001G375000 Sobic006G237100--Sobic002G404900 Sobic006G237100--Sobic002G140000 Sobic006G237100--Sobic001G161400 Sobic006G237100--Sobic001G437200 Sobic006G237100--Sobic007G116100 Sobic006G237100--Sobic003G310100 Sobic003G162800--Sobic001G375000 Sobic003G162800--Sobic003G327200 Sobic003G162800--Sobic002G156100 Sobic003G345900 Sobic003G345900 Sobic003G162800--Sobic003G345900 Sobic002G181132 Sobic002G181132 Sobic003G162800--Sobic002G181132 Sobic004G003900 Sobic004G003900 Sobic003G162800--Sobic004G003900 Sobic003G045300 Sobic003G045300 Sobic003G162800--Sobic003G045300 Sobic003G162800--Sobic001G514100 Sobic003G162800--Sobic010G027200 Sobic006G281066 Sobic006G281066 Sobic002G363500--Sobic006G281066 Sobic005G022000 Sobic005G022000 Sobic002G363500--Sobic005G022000 Sobic002G363500--Sobic001G395300 Sobic002G363500--Sobic001G437200 Sobic001G104300 Sobic001G104300 Sobic002G363500--Sobic001G104300 Sobic002G363500--Sobic003G298400 Sobic010G134500 Sobic010G134500 Sobic002G363500--Sobic010G134500 Sobic003G165800 Sobic003G165800 Sobic002G363500--Sobic003G165800 Sobic002G363500--Sobic006G237100 Sobic009G137000--Sobic001G395300 Sobic009G137000--Sobic002G404900 Sobic003G039300 Sobic003G039300 Sobic009G137000--Sobic003G039300 Sobic002G243650 Sobic002G243650 Sobic009G137000--Sobic002G243650 Sobic009G233800 Sobic009G233800 Sobic009G137000--Sobic009G233800 Sobic003G222600 Sobic003G222600 Sobic009G137000--Sobic003G222600 Sobic006G110200 Sobic006G110200 Sobic009G137000--Sobic006G110200 Sobic009G137000--Sobic006G237100 Sobic003G030400 Sobic003G030400 Sobic009G137000--Sobic003G030400
Octagon: transcription factors


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