Gene annotation
Transcriptome id Sobic.004G139900.1
Synonym Sb04g017380
Functional annotation ATP binding, related, putative, expressed
UniProt A0A194YPP1
Pfam PF02861
Panther DB PTHR11638 PTHR11638:SF123
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G57130 : Clp amino terminal domain-containing protein
RAP-DB (Rice) LOC_Os02g26600.1 : ATP binding, related, putative, expressed
MaizeGDB (Corn) Zm00025a055782 , Zm00025a020294 , Zm00025a029038 , Zm00025a011930 , Zm00025a033537 , Zm00025a020580
Brachypodium KQJ99403
Barley HORVU4Hr1G021370.9 , HORVU4Hr1G021370.1 , HORVU2Hr1G065840.5 , HORVU2Hr1G065840.1 , HORVU2Hr1G065840.3 , HORVU2Hr1G065840.2
Wheat TraesCS4D02G114100 , TraesCS2B02G289600 , TraesCS2A02G270800 , TraesCS2A02G270800 , TraesCS2D02G269900 , TraesCS4A02G199000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G448000 AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed K09285: OVM, AP2-like factor, ANT lineage
2 Sobic.006G255300 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@auxin response factor, putative, expressed K14486: K14486, auxin response factor
3 Sobic.007G097100 aspartic proteinase nepenthesin precursor, putative, expressed -
4 Sobic.003G350400 thaumatin, putative, expressed -
5 Sobic.004G311600 lysM domain-containing GPI-anchored protein precursor, putative, expressed -
6 Sobic.008G042200 DUF623 domain containing protein, expressed -
7 Sobic.006G016700 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
8 Sobic.001G276800 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
9 Sobic.009G200000 expressed protein -
10 Sobic.004G115700 extra-large G-protein-related, putative, expressed -
11 Sobic.005G092700 expressed protein -
12 Sobic.006G172000 pectinesterase, putative, expressed -
13 Sobic.004G330200 "TGW6(Ortholog in rice:Ishimaru et al., 2013)"(PubMedID : 31659893)@SMP-30/Gluconolaconase/LRE-like region containing protein, expressed -
14 Sobic.002G175200 A3-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with A3 subfamily conserved sequence, expressed K10523: speckle-type POZ protein
15 Sobic.001G246600 MBTB37 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
16 Sobic.008G190000 leucine-rich repeat family protein, putative, expressed -
17 Sobic.006G027900 amidase, putative, expressed K01426: E3.5.1.4, amidase
18 Sobic.005G138000 zinc knuckle domain containing protein, expressed -
19 Sobic.010G106100 endoglucanase, putative, expressed -
20 Sobic.004G215100 expressed protein -


Gene co-expression network
sample Sobic004G139900 Sobic004G139900 Sobic001G448000 Sobic001G448000 Sobic004G139900--Sobic001G448000 Sobic006G255300 Sobic006G255300 Sobic004G139900--Sobic006G255300 Sobic007G097100 Sobic007G097100 Sobic004G139900--Sobic007G097100 Sobic003G350400 Sobic003G350400 Sobic004G139900--Sobic003G350400 Sobic004G311600 Sobic004G311600 Sobic004G139900--Sobic004G311600 Sobic008G042200 Sobic008G042200 Sobic004G139900--Sobic008G042200 Sobic006G016700 Sobic006G016700 Sobic004G139900--Sobic006G016700 Sobic001G276800 Sobic001G276800 Sobic004G139900--Sobic001G276800 Sobic009G200000 Sobic009G200000 Sobic004G139900--Sobic009G200000 Sobic001G448000--Sobic004G139900 Sobic001G448000--Sobic009G200000 Sobic001G448000--Sobic007G097100 Sobic001G448000--Sobic008G042200 Sobic004G115700 Sobic004G115700 Sobic001G448000--Sobic004G115700 Sobic004G269100 Sobic004G269100 Sobic001G448000--Sobic004G269100 Sobic004G215100 Sobic004G215100 Sobic001G448000--Sobic004G215100 Sobic008G123200 Sobic008G123200 Sobic001G448000--Sobic008G123200 Sobic005G092700 Sobic005G092700 Sobic001G448000--Sobic005G092700 Sobic006G255300--Sobic001G276800 Sobic001G068132 Sobic001G068132 Sobic006G255300--Sobic001G068132 Sobic009G137500 Sobic009G137500 Sobic006G255300--Sobic009G137500 Sobic006G187000 Sobic006G187000 Sobic006G255300--Sobic006G187000 Sobic006G197400 Sobic006G197400 Sobic006G255300--Sobic006G197400 Sobic001G246600 Sobic001G246600 Sobic006G255300--Sobic001G246600 Sobic002G175200 Sobic002G175200 Sobic006G255300--Sobic002G175200 Sobic004G330200 Sobic004G330200 Sobic006G255300--Sobic004G330200 Sobic001G267100 Sobic001G267100 Sobic006G255300--Sobic001G267100 Sobic006G172000 Sobic006G172000 Sobic007G097100--Sobic006G172000 Sobic001G320000 Sobic001G320000 Sobic007G097100--Sobic001G320000 Sobic001G493100 Sobic001G493100 Sobic007G097100--Sobic001G493100 Sobic004G142400 Sobic004G142400 Sobic007G097100--Sobic004G142400 Sobic007G160400 Sobic007G160400 Sobic007G097100--Sobic007G160400 Sobic006G226000 Sobic006G226000 Sobic007G097100--Sobic006G226000 Sobic007G097100--Sobic003G350400 Sobic006G135800 Sobic006G135800 Sobic007G097100--Sobic006G135800 Sobic006G041700 Sobic006G041700 Sobic007G097100--Sobic006G041700 Sobic002G256900 Sobic002G256900 Sobic003G350400--Sobic002G256900 Sobic003G350400--Sobic006G016700 Sobic003G350400--Sobic007G097100 Sobic003G350400--Sobic004G311600 Sobic003G350400--Sobic006G041700 Sobic003G350400--Sobic004G330200 Sobic003G350400--Sobic002G175200 Sobic003G350400--Sobic001G246600 Sobic003G350400--Sobic004G142400 Sobic006G247800 Sobic006G247800 Sobic004G311600--Sobic006G247800 Sobic002G286700 Sobic002G286700 Sobic004G311600--Sobic002G286700 Sobic004G311600--Sobic006G255300 Sobic004G311600--Sobic003G350400 Sobic003G196000 Sobic003G196000 Sobic004G311600--Sobic003G196000 Sobic004G311600--Sobic001G276800 Sobic002G230900 Sobic002G230900 Sobic004G311600--Sobic002G230900 Sobic004G311600--Sobic007G097100 Sobic004G311600--Sobic004G139900 Sobic008G042200--Sobic009G200000 Sobic008G042200--Sobic005G092700 Sobic008G042200--Sobic004G115700 Sobic008G190000 Sobic008G190000 Sobic008G042200--Sobic008G190000 Sobic003G366000 Sobic003G366000 Sobic008G042200--Sobic003G366000 Sobic006G240900 Sobic006G240900 Sobic008G042200--Sobic006G240900 Sobic006G110850 Sobic006G110850 Sobic008G042200--Sobic006G110850 Sobic005G125300 Sobic005G125300 Sobic008G042200--Sobic005G125300 Sobic009G207400 Sobic009G207400 Sobic008G042200--Sobic009G207400 Sobic003G147500 Sobic003G147500 Sobic006G016700--Sobic003G147500 Sobic006G275500 Sobic006G275500 Sobic006G016700--Sobic006G275500 Sobic006G016700--Sobic002G256900 Sobic006G016700--Sobic006G226000 Sobic007G050800 Sobic007G050800 Sobic006G016700--Sobic007G050800 Sobic002G168000 Sobic002G168000 Sobic006G016700--Sobic002G168000 Sobic007G187700 Sobic007G187700 Sobic006G016700--Sobic007G187700 Sobic008G052300 Sobic008G052300 Sobic006G016700--Sobic008G052300 Sobic005G153000 Sobic005G153000 Sobic006G016700--Sobic005G153000 Sobic001G276800--Sobic006G255300 Sobic001G276800--Sobic001G246600 Sobic001G276800--Sobic002G175200 Sobic001G276800--Sobic004G330200 Sobic001G276800--Sobic009G137500 Sobic001G276800--Sobic001G068132 Sobic001G276800--Sobic006G187000 Sobic001G276800--Sobic003G350400 Sobic001G276800--Sobic004G311600 Sobic009G200000--Sobic008G042200 Sobic009G200000--Sobic004G115700 Sobic009G200000--Sobic005G092700 Sobic009G200000--Sobic008G190000 Sobic009G200000--Sobic006G240900 Sobic009G200000--Sobic009G207400 Sobic001G075700 Sobic001G075700 Sobic009G200000--Sobic001G075700 Sobic001G244900 Sobic001G244900 Sobic009G200000--Sobic001G244900 Sobic009G200000--Sobic005G125300
Octagon: transcription factors


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