Gene annotation
Transcriptome id Sobic.009G081800.2,Sobic.009G081800.3
Synonym
Functional annotation helicase, putative, expressed
UniProt A0A1B6P7B5
Pfam PF13307 PF06733
Panther DB PTHR11472 PTHR11472:SF41
NCBI CDD -
KEGG Orthology K11273; DDX11, CHL1, chromosome transmission fidelity protein 1
Gene Ontology GO:0016818; hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides GO:0008026helicase activity GO:0006139nucleobase-containing compound metabolic process GO:0005524ATP binding GO:0003676nucleic acid binding GO:0004003DNA helicase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G79890 : RAD3-like DNA-binding helicase protein
RAP-DB (Rice) LOC_Os05g13300.1 : helicase, putative, expressed
MaizeGDB (Corn) Zm00025a001842 , Zm00025a001841 , Zm00025a043268
Brachypodium PNT71606 , KQK07010
Barley HORVU1Hr1G030100.20 , HORVU1Hr1G030100.21 , HORVU1Hr1G030100.19 , HORVU1Hr1G030100.18 , HORVU1Hr1G030100.11 , HORVU1Hr1G030100.10 , HORVU1Hr1G030100.13 , HORVU1Hr1G030100.12 , HORVU1Hr1G030100.15 , HORVU1Hr1G030100.14 , HORVU1Hr1G030100.17 , HORVU1Hr1G030100.16 , HORVU1Hr1G030100.9 , HORVU1Hr1G030100.8 , HORVU1Hr1G030100.4 , HORVU1Hr1G030100.7 , HORVU1Hr1G030100.6 , HORVU1Hr1G030100.1 , HORVU1Hr1G030100.3 , HORVU1Hr1G030100.2 , HORVU1Hr1G030100.5
Wheat TraesCS1D02G427500 , TraesCS1A02G127600 , TraesCS1A02G127600 , TraesCS1B02G449800 , TraesCS1A02G419800 , TraesCS1D02G126400 , TraesCS1B02G147100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G126800 expressed protein K10730: ATP-dependent DNA helicase Q4
2 Sobic.010G252200 PPR repeat domain containing protein, putative, expressed -
3 Sobic.003G041400 aminoacyl-tRNA synthetase, putative, expressed -
4 Sobic.006G127200 kelch repeat protein, putative, expressed -
5 Sobic.001G530100 hydroxymethylglutaryl-CoA synthase, putative, expressed K01641: hydroxymethylglutaryl-CoA synthase
6 Sobic.001G239900 amino acid permease, putative, expressed -
7 Sobic.010G269800 Phosphatidylinositol kinase and FAT containing domain protein, putative, expressed K06640: serine/threonine-protein kinase ATR
8 Sobic.005G210500 - K10901: BLM, RECQL3, bloom syndrome protein
9 Sobic.006G119300 ribonuclease H2 subunit B, putative, expressed K10744: ribonuclease H2 subunit B
10 Sobic.010G257500 expressed protein -
11 Sobic.010G197200 peroxiredoxin, putative, expressed -
12 Sobic.007G192500 nodulin, putative, expressed -
13 Sobic.009G080600 expressed protein -
14 Sobic.010G038200 CDT1A - Putative DNA replication initiation protein, expressed K10727: chromatin licensing and DNA replication factor 1
15 Sobic.002G286632 - -
16 Sobic.001G486600 RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed K10755: replication factor C subunit 2/4
17 Sobic.001G117900 CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07359: calcium/calmodulin-dependent protein kinase kinase 2
18 Sobic.010G165800 - -
19 Sobic.001G139900 CBS domain containing protein, expressed K16302: metal transporter CNNM
20 Sobic.004G213400 ATP8, putative, expressed -


Gene co-expression network
sample Sobic009G081800 Sobic009G081800 Sobic006G126800 Sobic006G126800 Sobic009G081800--Sobic006G126800 Sobic010G252200 Sobic010G252200 Sobic009G081800--Sobic010G252200 Sobic003G041400 Sobic003G041400 Sobic009G081800--Sobic003G041400 Sobic006G127200 Sobic006G127200 Sobic009G081800--Sobic006G127200 Sobic001G530100 Sobic001G530100 Sobic009G081800--Sobic001G530100 Sobic001G239900 Sobic001G239900 Sobic009G081800--Sobic001G239900 Sobic010G269800 Sobic010G269800 Sobic009G081800--Sobic010G269800 Sobic005G210500 Sobic005G210500 Sobic009G081800--Sobic005G210500 Sobic006G119300 Sobic006G119300 Sobic009G081800--Sobic006G119300 Sobic006G126800--Sobic009G081800 Sobic006G126800--Sobic010G252200 Sobic006G126800--Sobic010G269800 Sobic002G426100 Sobic002G426100 Sobic006G126800--Sobic002G426100 Sobic006G126800--Sobic006G127200 Sobic002G173400 Sobic002G173400 Sobic006G126800--Sobic002G173400 Sobic002G095300 Sobic002G095300 Sobic006G126800--Sobic002G095300 Sobic002G286632 Sobic002G286632 Sobic006G126800--Sobic002G286632 Sobic006G126800--Sobic005G210500 Sobic010G252200--Sobic006G126800 Sobic010G252200--Sobic005G210500 Sobic010G252200--Sobic009G081800 Sobic001G486600 Sobic001G486600 Sobic010G252200--Sobic001G486600 Sobic003G184666 Sobic003G184666 Sobic010G252200--Sobic003G184666 Sobic010G252200--Sobic006G119300 Sobic001G268300 Sobic001G268300 Sobic010G252200--Sobic001G268300 Sobic002G362200 Sobic002G362200 Sobic010G252200--Sobic002G362200 Sobic003G045450 Sobic003G045450 Sobic010G252200--Sobic003G045450 Sobic003G041400--Sobic009G081800 Sobic006G095300 Sobic006G095300 Sobic003G041400--Sobic006G095300 Sobic003G041400--Sobic005G210500 Sobic003G041400--Sobic006G127200 Sobic003G041400--Sobic006G119300 Sobic004G350200 Sobic004G350200 Sobic003G041400--Sobic004G350200 Sobic003G041400--Sobic010G252200 Sobic010G257500 Sobic010G257500 Sobic003G041400--Sobic010G257500 Sobic001G521100 Sobic001G521100 Sobic003G041400--Sobic001G521100 Sobic004G306100 Sobic004G306100 Sobic006G127200--Sobic004G306100 Sobic002G271400 Sobic002G271400 Sobic006G127200--Sobic002G271400 Sobic006G127200--Sobic010G257500 Sobic002G123600 Sobic002G123600 Sobic006G127200--Sobic002G123600 Sobic003G409600 Sobic003G409600 Sobic006G127200--Sobic003G409600 Sobic003G226700 Sobic003G226700 Sobic006G127200--Sobic003G226700 Sobic006G127200--Sobic009G081800 Sobic010G103500 Sobic010G103500 Sobic006G127200--Sobic010G103500 Sobic001G025900 Sobic001G025900 Sobic006G127200--Sobic001G025900 Sobic001G530100--Sobic003G045450 Sobic001G530100--Sobic009G081800 Sobic010G197200 Sobic010G197200 Sobic001G530100--Sobic010G197200 Sobic004G291200 Sobic004G291200 Sobic001G530100--Sobic004G291200 Sobic003G147500 Sobic003G147500 Sobic001G530100--Sobic003G147500 Sobic003G102700 Sobic003G102700 Sobic001G530100--Sobic003G102700 Sobic003G326500 Sobic003G326500 Sobic001G530100--Sobic003G326500 Sobic007G112100 Sobic007G112100 Sobic001G530100--Sobic007G112100 Sobic007G219100 Sobic007G219100 Sobic001G530100--Sobic007G219100 Sobic007G192500 Sobic007G192500 Sobic001G239900--Sobic007G192500 Sobic001G239900--Sobic009G081800 Sobic001G239900--Sobic006G126800 Sobic003G022000 Sobic003G022000 Sobic001G239900--Sobic003G022000 Sobic009G103400 Sobic009G103400 Sobic001G239900--Sobic009G103400 Sobic002G201700 Sobic002G201700 Sobic001G239900--Sobic002G201700 Sobic009G244900 Sobic009G244900 Sobic001G239900--Sobic009G244900 Sobic002G310300 Sobic002G310300 Sobic001G239900--Sobic002G310300 Sobic002G167100 Sobic002G167100 Sobic001G239900--Sobic002G167100 Sobic002G308000 Sobic002G308000 Sobic010G269800--Sobic002G308000 Sobic007G102000 Sobic007G102000 Sobic010G269800--Sobic007G102000 Sobic009G080600 Sobic009G080600 Sobic010G269800--Sobic009G080600 Sobic010G253200 Sobic010G253200 Sobic010G269800--Sobic010G253200 Sobic002G390800 Sobic002G390800 Sobic010G269800--Sobic002G390800 Sobic008G004900 Sobic008G004900 Sobic010G269800--Sobic008G004900 Sobic002G192900 Sobic002G192900 Sobic010G269800--Sobic002G192900 Sobic010G018900 Sobic010G018900 Sobic010G269800--Sobic010G018900 Sobic009G042000 Sobic009G042000 Sobic010G269800--Sobic009G042000 Sobic003G418400 Sobic003G418400 Sobic005G210500--Sobic003G418400 Sobic005G210500--Sobic001G486600 Sobic009G214500 Sobic009G214500 Sobic005G210500--Sobic009G214500 Sobic010G038200 Sobic010G038200 Sobic005G210500--Sobic010G038200 Sobic001G117900 Sobic001G117900 Sobic005G210500--Sobic001G117900 Sobic003G005500 Sobic003G005500 Sobic005G210500--Sobic003G005500 Sobic005G210500--Sobic010G252200 Sobic007G102300 Sobic007G102300 Sobic005G210500--Sobic007G102300 Sobic010G030000 Sobic010G030000 Sobic005G210500--Sobic010G030000 Sobic002G113400 Sobic002G113400 Sobic006G119300--Sobic002G113400 Sobic006G119300--Sobic001G486600 Sobic002G297500 Sobic002G297500 Sobic006G119300--Sobic002G297500 Sobic007G125300 Sobic007G125300 Sobic006G119300--Sobic007G125300 Sobic006G119300--Sobic010G252200 Sobic006G119300--Sobic001G521100 Sobic004G032900 Sobic004G032900 Sobic006G119300--Sobic004G032900 Sobic006G119300--Sobic005G210500 Sobic004G053900 Sobic004G053900 Sobic006G119300--Sobic004G053900
Octagon: transcription factors


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