Gene annotation
Transcriptome id Sobic.001G530100.2
Synonym HMGS, FKP1, EMB2778, Sb01g049310, MVA1
Functional annotation hydroxymethylglutaryl-CoA synthase, putative, expressed
UniProt A0A1Z5SBR4
Pfam PF01154 PF08540
Panther DB PTHR11877 PTHR11877:SF20
NCBI CDD -
KEGG Orthology K01641; hydroxymethylglutaryl-CoA synthase
Gene Ontology GO:0008299; isoprenoid biosynthetic process GO:0004421hydroxymethylglutaryl-CoA synthase activity


Orthologs (automatic annotation)
TAIR AT4G11820 : hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase
RAP-DB (Rice) LOC_Os03g02710.1 : hydroxymethylglutaryl-CoA synthase, putative, expressed
MaizeGDB (Corn) Zm00025a047699 , Zm00025a014379 , Zm00025a054341 , Zm00025a053518 , Zm00025a000254
Brachypodium KQK23961 , KQK23962
Barley HORVU4Hr1G085750.20 , HORVU4Hr1G085750.21 , HORVU4Hr1G085750.22 , HORVU4Hr1G085750.23 , HORVU4Hr1G085750.24 , HORVU4Hr1G085750.1 , HORVU4Hr1G085750.19 , HORVU4Hr1G085750.18 , HORVU4Hr1G085750.15 , HORVU4Hr1G085750.14 , HORVU4Hr1G085750.17 , HORVU4Hr1G085750.16 , HORVU4Hr1G085750.11 , HORVU4Hr1G085750.10 , HORVU4Hr1G085750.13 , HORVU4Hr1G085750.12 , HORVU4Hr1G085750.3 , HORVU4Hr1G085750.8 , HORVU4Hr1G085750.6 , HORVU4Hr1G085750.2 , HORVU4Hr1G085750.5 , HORVU4Hr1G085750.4 , HORVU4Hr1G085750.7 , HORVU4Hr1G085750.9
Wheat TraesCS4B02G353100 , TraesCS4D02G347100 , TraesCS5A02G522100
Populus PNT53915 , PNT53916 , PNT53917


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cDNA sequences
Sobic.001G530100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G045450 - -
2 Sobic.009G081800 helicase, putative, expressed K11273: DDX11, CHL1, chromosome transmission fidelity protein 1
3 Sobic.010G197200 peroxiredoxin, putative, expressed -
4 Sobic.004G291200 - -
5 Sobic.003G147500 PHS1, putative, expressed K14165: atypical dual specificity phosphatase
6 Sobic.003G102700 exostosin family protein, putative, expressed -
7 Sobic.003G326500 apurinic endonuclease-redox protein, putative, expressed K01142: E3.1.11.2, exodeoxyribonuclease III
8 Sobic.007G112100 enoyl-acyl-carrier-protein reductase NADH, chloroplast precursor, expressed K00208: enoyl-[acyl-carrier protein] reductase I
9 Sobic.007G219100 phosphatidylinositol transfer, putative, expressed -
10 Sobic.008G059900 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K00627: DLAT, aceF, pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase)
11 Sobic.001G407100 PHD finger family protein, putative, expressed -
12 Sobic.006G126800 expressed protein K10730: ATP-dependent DNA helicase Q4
13 Sobic.010G165800 - -
14 Sobic.003G204100 expressed protein -
15 Sobic.010G252200 PPR repeat domain containing protein, putative, expressed -
16 Sobic.003G427200 uridine 5-monophosphate synthase, putative, expressed K13421: uridine monophosphate synthetase
K12486: stromal membrane-associated protein
17 Sobic.010G250400 OsSub52 - Putative Subtilisin homologue, expressed -
18 Sobic.006G157100 sphingolipid delta desaturase, putative, expressed K04712: sphingolipid 4-desaturase/C4-monooxygenase
19 Sobic.001G140700 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
20 Sobic.010G024600 aminomethyltransferase, putative, expressed K06980: tRNA-modifying protein YgfZ


Gene co-expression network
sample Sobic001G530100 Sobic001G530100 Sobic003G045450 Sobic003G045450 Sobic001G530100--Sobic003G045450 Sobic009G081800 Sobic009G081800 Sobic001G530100--Sobic009G081800 Sobic010G197200 Sobic010G197200 Sobic001G530100--Sobic010G197200 Sobic004G291200 Sobic004G291200 Sobic001G530100--Sobic004G291200 Sobic003G147500 Sobic003G147500 Sobic001G530100--Sobic003G147500 Sobic003G102700 Sobic003G102700 Sobic001G530100--Sobic003G102700 Sobic003G326500 Sobic003G326500 Sobic001G530100--Sobic003G326500 Sobic007G112100 Sobic007G112100 Sobic001G530100--Sobic007G112100 Sobic007G219100 Sobic007G219100 Sobic001G530100--Sobic007G219100 Sobic008G141900 Sobic008G141900 Sobic003G045450--Sobic008G141900 Sobic001G376501 Sobic001G376501 Sobic003G045450--Sobic001G376501 Sobic003G204100 Sobic003G204100 Sobic003G045450--Sobic003G204100 Sobic005G212201 Sobic005G212201 Sobic003G045450--Sobic005G212201 Sobic009G163400 Sobic009G163400 Sobic003G045450--Sobic009G163400 Sobic004G276000 Sobic004G276000 Sobic003G045450--Sobic004G276000 Sobic002G064800 Sobic002G064800 Sobic003G045450--Sobic002G064800 Sobic007G122700 Sobic007G122700 Sobic003G045450--Sobic007G122700 Sobic001G010500 Sobic001G010500 Sobic003G045450--Sobic001G010500 Sobic006G126800 Sobic006G126800 Sobic009G081800--Sobic006G126800 Sobic010G252200 Sobic010G252200 Sobic009G081800--Sobic010G252200 Sobic003G041400 Sobic003G041400 Sobic009G081800--Sobic003G041400 Sobic006G127200 Sobic006G127200 Sobic009G081800--Sobic006G127200 Sobic009G081800--Sobic001G530100 Sobic001G239900 Sobic001G239900 Sobic009G081800--Sobic001G239900 Sobic010G269800 Sobic010G269800 Sobic009G081800--Sobic010G269800 Sobic005G210500 Sobic005G210500 Sobic009G081800--Sobic005G210500 Sobic006G119300 Sobic006G119300 Sobic009G081800--Sobic006G119300 Sobic008G059900 Sobic008G059900 Sobic010G197200--Sobic008G059900 Sobic010G197200--Sobic001G530100 Sobic001G167500 Sobic001G167500 Sobic010G197200--Sobic001G167500 Sobic010G197200--Sobic009G081800 Sobic010G197200--Sobic006G127200 Sobic005G031000 Sobic005G031000 Sobic010G197200--Sobic005G031000 Sobic002G426100 Sobic002G426100 Sobic010G197200--Sobic002G426100 Sobic002G125800 Sobic002G125800 Sobic010G197200--Sobic002G125800 Sobic010G197200--Sobic006G126800 Sobic004G123200 Sobic004G123200 Sobic004G291200--Sobic004G123200 Sobic009G012500 Sobic009G012500 Sobic004G291200--Sobic009G012500 Sobic010G024600 Sobic010G024600 Sobic004G291200--Sobic010G024600 Sobic002G266300 Sobic002G266300 Sobic004G291200--Sobic002G266300 Sobic006G217800 Sobic006G217800 Sobic004G291200--Sobic006G217800 Sobic009G241900 Sobic009G241900 Sobic004G291200--Sobic009G241900 Sobic005G078132 Sobic005G078132 Sobic004G291200--Sobic005G078132 Sobic005G021000 Sobic005G021000 Sobic004G291200--Sobic005G021000 Sobic003G427200 Sobic003G427200 Sobic004G291200--Sobic003G427200 Sobic006G016700 Sobic006G016700 Sobic003G147500--Sobic006G016700 Sobic006G275500 Sobic006G275500 Sobic003G147500--Sobic006G275500 Sobic009G224300 Sobic009G224300 Sobic003G147500--Sobic009G224300 Sobic008G090000 Sobic008G090000 Sobic003G147500--Sobic008G090000 Sobic010G250400 Sobic010G250400 Sobic003G147500--Sobic010G250400 Sobic002G168000 Sobic002G168000 Sobic003G147500--Sobic002G168000 Sobic003G147500--Sobic007G219100 Sobic003G147500--Sobic004G123200 Sobic009G146250 Sobic009G146250 Sobic003G147500--Sobic009G146250 Sobic001G199500 Sobic001G199500 Sobic003G102700--Sobic001G199500 Sobic005G102800 Sobic005G102800 Sobic003G102700--Sobic005G102800 Sobic006G084300 Sobic006G084300 Sobic003G102700--Sobic006G084300 Sobic002G187600 Sobic002G187600 Sobic003G102700--Sobic002G187600 Sobic003G102700--Sobic002G168000 Sobic006G281900 Sobic006G281900 Sobic003G102700--Sobic006G281900 Sobic003G024000 Sobic003G024000 Sobic003G102700--Sobic003G024000 Sobic009G188900 Sobic009G188900 Sobic003G102700--Sobic009G188900 Sobic002G367200 Sobic002G367200 Sobic003G102700--Sobic002G367200 Sobic003G183466 Sobic003G183466 Sobic003G326500--Sobic003G183466 Sobic009G178500 Sobic009G178500 Sobic003G326500--Sobic009G178500 Sobic002G095300 Sobic002G095300 Sobic003G326500--Sobic002G095300 Sobic003G326500--Sobic008G141900 Sobic007G082000 Sobic007G082000 Sobic003G326500--Sobic007G082000 Sobic002G383700 Sobic002G383700 Sobic003G326500--Sobic002G383700 Sobic003G326500--Sobic004G291200 Sobic002G286632 Sobic002G286632 Sobic003G326500--Sobic002G286632 Sobic003G326500--Sobic003G045450 Sobic009G109300 Sobic009G109300 Sobic007G112100--Sobic009G109300 Sobic001G532800 Sobic001G532800 Sobic007G112100--Sobic001G532800 Sobic004G032900 Sobic004G032900 Sobic007G112100--Sobic004G032900 Sobic002G158500 Sobic002G158500 Sobic007G112100--Sobic002G158500 Sobic002G236700 Sobic002G236700 Sobic007G112100--Sobic002G236700 Sobic006G120600 Sobic006G120600 Sobic007G112100--Sobic006G120600 Sobic001G140700 Sobic001G140700 Sobic007G112100--Sobic001G140700 Sobic002G304400 Sobic002G304400 Sobic007G112100--Sobic002G304400 Sobic007G079600 Sobic007G079600 Sobic007G112100--Sobic007G079600 Sobic007G219100--Sobic003G147500 Sobic003G292700 Sobic003G292700 Sobic007G219100--Sobic003G292700 Sobic003G409600 Sobic003G409600 Sobic007G219100--Sobic003G409600 Sobic007G219100--Sobic009G224300 Sobic001G407100 Sobic001G407100 Sobic007G219100--Sobic001G407100 Sobic009G225500 Sobic009G225500 Sobic007G219100--Sobic009G225500 Sobic006G255300 Sobic006G255300 Sobic007G219100--Sobic006G255300 Sobic007G219100--Sobic010G250400 Sobic007G219100--Sobic006G016700
Octagon: transcription factors


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