Gene annotation
Transcriptome id Sobic.001G407100.3
Synonym Sb01g038485
Functional annotation PHD finger family protein, putative, expressed
UniProt A0A1B6QNU5
Pfam PF00628 PF05641 PF16135
Panther DB PTHR24098 PTHR24098:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G58610 : PHD finger transcription factor, putative
RAP-DB (Rice) LOC_Os07g49290.1 : PHD finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a001984
Brachypodium -
Barley HORVU4Hr1G056300.1
Wheat TraesCS4B02G194600 , TraesCS4B02G194600 , TraesCS4B02G194600 , TraesCS4A02G109600 , TraesCS4A02G109600 , TraesCS4D02G195300 , TraesCS4D02G195300 , TraesCS4D02G195300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G219100 phosphatidylinositol transfer, putative, expressed -
2 Sobic.010G250400 OsSub52 - Putative Subtilisin homologue, expressed -
3 Sobic.008G046200 PHD-finger family protein, expressed -
4 Sobic.010G143600 ATP-binding region, ATPase-like domain containing protein, expressed -
5 Sobic.001G530100 hydroxymethylglutaryl-CoA synthase, putative, expressed K01641: hydroxymethylglutaryl-CoA synthase
6 Sobic.004G215100 expressed protein -
7 Sobic.002G173400 expressed protein -
8 Sobic.004G222200 - -
9 Sobic.002G144600 - -
10 Sobic.003G147500 PHS1, putative, expressed K14165: atypical dual specificity phosphatase
11 Sobic.009G224300 expressed protein -
12 Sobic.003G045450 - -
13 Sobic.009G207400 ATP binding protein, putative, expressed -
14 Sobic.003G183466 - -
15 Sobic.008G175400 U-box domain-containing protein, putative, expressed -
16 Sobic.003G326500 apurinic endonuclease-redox protein, putative, expressed K01142: E3.1.11.2, exodeoxyribonuclease III
17 Sobic.003G251700 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin response factor, putative, expressed K14486: K14486, auxin response factor
18 Sobic.002G394200 expressed protein K15711: SMARCA3, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3
19 Sobic.003G204100 expressed protein -
20 Sobic.002G168000 expressed protein -


Gene co-expression network
sample Sobic001G407100 Sobic001G407100 Sobic007G219100 Sobic007G219100 Sobic001G407100--Sobic007G219100 Sobic010G250400 Sobic010G250400 Sobic001G407100--Sobic010G250400 Sobic008G046200 Sobic008G046200 Sobic001G407100--Sobic008G046200 Sobic010G143600 Sobic010G143600 Sobic001G407100--Sobic010G143600 Sobic001G530100 Sobic001G530100 Sobic001G407100--Sobic001G530100 Sobic004G215100 Sobic004G215100 Sobic001G407100--Sobic004G215100 Sobic002G173400 Sobic002G173400 Sobic001G407100--Sobic002G173400 Sobic004G222200 Sobic004G222200 Sobic001G407100--Sobic004G222200 Sobic002G144600 Sobic002G144600 Sobic001G407100--Sobic002G144600 Sobic003G147500 Sobic003G147500 Sobic007G219100--Sobic003G147500 Sobic003G292700 Sobic003G292700 Sobic007G219100--Sobic003G292700 Sobic003G409600 Sobic003G409600 Sobic007G219100--Sobic003G409600 Sobic009G224300 Sobic009G224300 Sobic007G219100--Sobic009G224300 Sobic007G219100--Sobic001G407100 Sobic009G225500 Sobic009G225500 Sobic007G219100--Sobic009G225500 Sobic006G255300 Sobic006G255300 Sobic007G219100--Sobic006G255300 Sobic007G219100--Sobic010G250400 Sobic006G016700 Sobic006G016700 Sobic007G219100--Sobic006G016700 Sobic009G188900 Sobic009G188900 Sobic010G250400--Sobic009G188900 Sobic005G153000 Sobic005G153000 Sobic010G250400--Sobic005G153000 Sobic002G021200 Sobic002G021200 Sobic010G250400--Sobic002G021200 Sobic010G250400--Sobic003G147500 Sobic002G168000 Sobic002G168000 Sobic010G250400--Sobic002G168000 Sobic009G207400 Sobic009G207400 Sobic010G250400--Sobic009G207400 Sobic007G187700 Sobic007G187700 Sobic010G250400--Sobic007G187700 Sobic001G054700 Sobic001G054700 Sobic010G250400--Sobic001G054700 Sobic001G532800 Sobic001G532800 Sobic010G250400--Sobic001G532800 Sobic008G046200--Sobic002G144600 Sobic003G005500 Sobic003G005500 Sobic008G046200--Sobic003G005500 Sobic007G122700 Sobic007G122700 Sobic008G046200--Sobic007G122700 Sobic003G129500 Sobic003G129500 Sobic008G046200--Sobic003G129500 Sobic002G286632 Sobic002G286632 Sobic008G046200--Sobic002G286632 Sobic009G012400 Sobic009G012400 Sobic008G046200--Sobic009G012400 Sobic008G046200--Sobic004G222200 Sobic008G141900 Sobic008G141900 Sobic008G046200--Sobic008G141900 Sobic003G183466 Sobic003G183466 Sobic008G046200--Sobic003G183466 Sobic005G078700 Sobic005G078700 Sobic010G143600--Sobic005G078700 Sobic010G143600--Sobic002G173400 Sobic003G194800 Sobic003G194800 Sobic010G143600--Sobic003G194800 Sobic009G120400 Sobic009G120400 Sobic010G143600--Sobic009G120400 Sobic010G143600--Sobic003G183466 Sobic003G204100 Sobic003G204100 Sobic010G143600--Sobic003G204100 Sobic006G008300 Sobic006G008300 Sobic010G143600--Sobic006G008300 Sobic003G397100 Sobic003G397100 Sobic010G143600--Sobic003G397100 Sobic003G184666 Sobic003G184666 Sobic010G143600--Sobic003G184666 Sobic003G045450 Sobic003G045450 Sobic001G530100--Sobic003G045450 Sobic009G081800 Sobic009G081800 Sobic001G530100--Sobic009G081800 Sobic010G197200 Sobic010G197200 Sobic001G530100--Sobic010G197200 Sobic004G291200 Sobic004G291200 Sobic001G530100--Sobic004G291200 Sobic001G530100--Sobic003G147500 Sobic003G102700 Sobic003G102700 Sobic001G530100--Sobic003G102700 Sobic003G326500 Sobic003G326500 Sobic001G530100--Sobic003G326500 Sobic007G112100 Sobic007G112100 Sobic001G530100--Sobic007G112100 Sobic001G530100--Sobic007G219100 Sobic003G251700 Sobic003G251700 Sobic004G215100--Sobic003G251700 Sobic006G172000 Sobic006G172000 Sobic004G215100--Sobic006G172000 Sobic004G115700 Sobic004G115700 Sobic004G215100--Sobic004G115700 Sobic004G269100 Sobic004G269100 Sobic004G215100--Sobic004G269100 Sobic001G493100 Sobic001G493100 Sobic004G215100--Sobic001G493100 Sobic001G448000 Sobic001G448000 Sobic004G215100--Sobic001G448000 Sobic007G097100 Sobic007G097100 Sobic004G215100--Sobic007G097100 Sobic002G378600 Sobic002G378600 Sobic004G215100--Sobic002G378600 Sobic010G106100 Sobic010G106100 Sobic004G215100--Sobic010G106100 Sobic008G131900 Sobic008G131900 Sobic002G173400--Sobic008G131900 Sobic002G173400--Sobic009G120400 Sobic002G173400--Sobic003G194800 Sobic008G047500 Sobic008G047500 Sobic002G173400--Sobic008G047500 Sobic002G052800 Sobic002G052800 Sobic002G173400--Sobic002G052800 Sobic010G038200 Sobic010G038200 Sobic002G173400--Sobic010G038200 Sobic002G173400--Sobic010G143600 Sobic004G000400 Sobic004G000400 Sobic002G173400--Sobic004G000400 Sobic005G060100 Sobic005G060100 Sobic002G173400--Sobic005G060100 Sobic004G222150 Sobic004G222150 Sobic004G222200--Sobic004G222150 Sobic004G222200--Sobic002G144600 Sobic004G123200 Sobic004G123200 Sobic004G222200--Sobic004G123200 Sobic004G222200--Sobic010G250400 Sobic002G055800 Sobic002G055800 Sobic004G222200--Sobic002G055800 Sobic004G222200--Sobic008G046200 Sobic004G222200--Sobic005G153000 Sobic006G226000 Sobic006G226000 Sobic004G222200--Sobic006G226000 Sobic003G001800 Sobic003G001800 Sobic004G222200--Sobic003G001800 Sobic002G144600--Sobic008G046200 Sobic002G144600--Sobic004G222200 Sobic009G188500 Sobic009G188500 Sobic002G144600--Sobic009G188500 Sobic002G144600--Sobic005G153000 Sobic005G196600 Sobic005G196600 Sobic002G144600--Sobic005G196600 Sobic006G197400 Sobic006G197400 Sobic002G144600--Sobic006G197400 Sobic003G086800 Sobic003G086800 Sobic002G144600--Sobic003G086800 Sobic002G144600--Sobic010G250400 Sobic010G037901 Sobic010G037901 Sobic002G144600--Sobic010G037901
Octagon: transcription factors


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