Gene annotation
Transcriptome id Sobic.002G310300.1,Sobic.002G310300.2,Sobic.002G310300.3
Synonym Sb02g034000, ATSRS2, SRS2
Functional annotation -
UniProt C5X9A5 , A0A1B6QED6 , A0A1B6QED4
Pfam PF13245 PF13538 PF13538 PF00580
Panther DB PTHR11070 PTHR11070:SF15
NCBI CDD KOG2108; 3'-5' DNA helicase
KEGG Orthology -
Gene Ontology GO:0005524; ATP binding GO:0004003DNA helicase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT4G25120 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os07g30980.1 : uvrD/REP helicase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a014730 , Zm00025a035685
Brachypodium PNT75056 , KQK16156
Barley HORVU2Hr1G051300.37 , HORVU2Hr1G051300.36 , HORVU2Hr1G051300.35 , HORVU2Hr1G051300.34 , HORVU2Hr1G051300.33 , HORVU2Hr1G051300.32 , HORVU2Hr1G051300.31 , HORVU2Hr1G051300.30 , HORVU2Hr1G051300.39 , HORVU2Hr1G051300.38 , HORVU2Hr1G051300.24 , HORVU2Hr1G051300.25 , HORVU2Hr1G051300.26 , HORVU2Hr1G051300.27 , HORVU2Hr1G051300.20 , HORVU2Hr1G051300.21 , HORVU2Hr1G051300.22 , HORVU2Hr1G051300.23 , HORVU2Hr1G051300.28 , HORVU2Hr1G051300.29 , HORVU2Hr1G051300.19 , HORVU2Hr1G051300.18 , HORVU2Hr1G051300.11 , HORVU2Hr1G051300.10 , HORVU2Hr1G051300.13 , HORVU2Hr1G051300.12 , HORVU2Hr1G051300.15 , HORVU2Hr1G051300.17 , HORVU2Hr1G051300.16 , HORVU2Hr1G051300.9 , HORVU2Hr1G051300.8 , HORVU2Hr1G051300.5 , HORVU2Hr1G051300.4 , HORVU2Hr1G051300.7 , HORVU2Hr1G051300.6 , HORVU2Hr1G051300.1 , HORVU2Hr1G051300.3 , HORVU2Hr1G051300.2 , HORVU2Hr1G051300.42 , HORVU2Hr1G051300.40 , HORVU2Hr1G051300.41
Wheat TraesCS2A02G226500 , TraesCS2D02G237200 , TraesCS2D02G237200 , TraesCS2D02G237200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G500400 kinesin motor domain containing protein, expressed -
2 Sobic.003G118100 EMB3013, putative, expressed K17545: serine/threonine-protein kinase ULK4
3 Sobic.001G323400 expressed protein -
4 Sobic.002G297500 coiled-coil domain-containing protein 111, putative, expressed -
5 Sobic.004G053900 expressed protein -
6 Sobic.006G035600 Kinesin motor domain domain containing protein, expressed K10400: kinesin family member 15
7 Sobic.010G042600 transporter family protein, putative, expressed K15280: solute carrier family 35, member C2
8 Sobic.010G269800 Phosphatidylinositol kinase and FAT containing domain protein, putative, expressed K06640: serine/threonine-protein kinase ATR
9 Sobic.010G051100 OsPDIL1-5 protein disulfide isomerase PDIL1-5, expressed K09580: PDIA1, protein disulfide-isomerase A1
10 Sobic.004G095200 Peptidase family C50, putative, expressed K02365: separase
11 Sobic.007G125300 BRCA1 C Terminus domain containing protein, expressed -
12 Sobic.002G191000 STE_MEKK_ste11_MAP3K.2 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
13 Sobic.002G290000 helicase, putative, expressed K15362: BRIP1, BACH1, fanconi anemia group J protein
14 Sobic.001G239900 amino acid permease, putative, expressed -
15 Sobic.002G113400 dnaJ domain containing protein, expressed -
16 Sobic.002G090500 calreticulin precursor protein, putative, expressed K08057: calreticulin
17 Sobic.009G081800 helicase, putative, expressed K11273: DDX11, CHL1, chromosome transmission fidelity protein 1
18 Sobic.009G080600 expressed protein -
19 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
20 Sobic.001G346500 Ca exchanger(PubMedID : 22196357)@sodium/calcium exchanger protein, putative, expressed K07300: chaA, Ca2+:H+ antiporter


Gene co-expression network
sample Sobic002G310300 Sobic002G310300 Sobic001G500400 Sobic001G500400 Sobic002G310300--Sobic001G500400 Sobic003G118100 Sobic003G118100 Sobic002G310300--Sobic003G118100 Sobic001G323400 Sobic001G323400 Sobic002G310300--Sobic001G323400 Sobic002G297500 Sobic002G297500 Sobic002G310300--Sobic002G297500 Sobic004G053900 Sobic004G053900 Sobic002G310300--Sobic004G053900 Sobic006G035600 Sobic006G035600 Sobic002G310300--Sobic006G035600 Sobic010G042600 Sobic010G042600 Sobic002G310300--Sobic010G042600 Sobic010G269800 Sobic010G269800 Sobic002G310300--Sobic010G269800 Sobic010G051100 Sobic010G051100 Sobic002G310300--Sobic010G051100 Sobic001G500400--Sobic002G310300 Sobic001G500400--Sobic003G118100 Sobic001G500400--Sobic010G051100 Sobic001G500400--Sobic010G042600 Sobic001G500400--Sobic006G035600 Sobic001G500400--Sobic004G053900 Sobic001G500400--Sobic002G297500 Sobic001G109700 Sobic001G109700 Sobic001G500400--Sobic001G109700 Sobic004G032900 Sobic004G032900 Sobic001G500400--Sobic004G032900 Sobic003G118100--Sobic006G035600 Sobic002G191000 Sobic002G191000 Sobic003G118100--Sobic002G191000 Sobic010G008900 Sobic010G008900 Sobic003G118100--Sobic010G008900 Sobic008G148000 Sobic008G148000 Sobic003G118100--Sobic008G148000 Sobic005G000500 Sobic005G000500 Sobic003G118100--Sobic005G000500 Sobic007G125300 Sobic007G125300 Sobic003G118100--Sobic007G125300 Sobic001G131300 Sobic001G131300 Sobic003G118100--Sobic001G131300 Sobic003G294500 Sobic003G294500 Sobic003G118100--Sobic003G294500 Sobic001G029800 Sobic001G029800 Sobic003G118100--Sobic001G029800 Sobic001G126800 Sobic001G126800 Sobic001G323400--Sobic001G126800 Sobic003G159700 Sobic003G159700 Sobic001G323400--Sobic003G159700 Sobic006G095000 Sobic006G095000 Sobic001G323400--Sobic006G095000 Sobic002G308000 Sobic002G308000 Sobic001G323400--Sobic002G308000 Sobic002G192900 Sobic002G192900 Sobic001G323400--Sobic002G192900 Sobic004G064600 Sobic004G064600 Sobic001G323400--Sobic004G064600 Sobic001G323400--Sobic010G269800 Sobic002G390800 Sobic002G390800 Sobic001G323400--Sobic002G390800 Sobic001G011000 Sobic001G011000 Sobic001G323400--Sobic001G011000 Sobic002G113400 Sobic002G113400 Sobic002G297500--Sobic002G113400 Sobic002G297500--Sobic004G053900 Sobic001G082800 Sobic001G082800 Sobic002G297500--Sobic001G082800 Sobic002G297500--Sobic010G051100 Sobic009G136000 Sobic009G136000 Sobic002G297500--Sobic009G136000 Sobic001G013400 Sobic001G013400 Sobic002G297500--Sobic001G013400 Sobic006G119300 Sobic006G119300 Sobic002G297500--Sobic006G119300 Sobic008G004900 Sobic008G004900 Sobic002G297500--Sobic008G004900 Sobic001G025900 Sobic001G025900 Sobic002G297500--Sobic001G025900 Sobic004G053900--Sobic002G113400 Sobic004G053900--Sobic002G297500 Sobic002G290000 Sobic002G290000 Sobic004G053900--Sobic002G290000 Sobic004G053900--Sobic007G125300 Sobic004G053900--Sobic008G148000 Sobic005G110535 Sobic005G110535 Sobic004G053900--Sobic005G110535 Sobic004G053900--Sobic010G051100 Sobic006G179200 Sobic006G179200 Sobic004G053900--Sobic006G179200 Sobic004G328300 Sobic004G328300 Sobic004G053900--Sobic004G328300 Sobic006G035600--Sobic003G118100 Sobic006G035600--Sobic001G131300 Sobic006G035600--Sobic002G191000 Sobic009G181500 Sobic009G181500 Sobic006G035600--Sobic009G181500 Sobic006G035600--Sobic010G008900 Sobic006G035600--Sobic005G000500 Sobic006G035600--Sobic003G294500 Sobic006G035600--Sobic010G051100 Sobic006G035600--Sobic008G148000 Sobic010G042600--Sobic003G118100 Sobic009G206500 Sobic009G206500 Sobic010G042600--Sobic009G206500 Sobic001G144200 Sobic001G144200 Sobic010G042600--Sobic001G144200 Sobic006G267500 Sobic006G267500 Sobic010G042600--Sobic006G267500 Sobic003G266400 Sobic003G266400 Sobic010G042600--Sobic003G266400 Sobic010G018500 Sobic010G018500 Sobic010G042600--Sobic010G018500 Sobic001G196000 Sobic001G196000 Sobic010G042600--Sobic001G196000 Sobic010G042600--Sobic006G035600 Sobic010G042600--Sobic001G500400 Sobic010G269800--Sobic002G308000 Sobic007G102000 Sobic007G102000 Sobic010G269800--Sobic007G102000 Sobic009G080600 Sobic009G080600 Sobic010G269800--Sobic009G080600 Sobic010G253200 Sobic010G253200 Sobic010G269800--Sobic010G253200 Sobic010G269800--Sobic002G390800 Sobic010G269800--Sobic008G004900 Sobic010G269800--Sobic002G192900 Sobic010G018900 Sobic010G018900 Sobic010G269800--Sobic010G018900 Sobic009G042000 Sobic009G042000 Sobic010G269800--Sobic009G042000 Sobic010G051100--Sobic009G181500 Sobic010G051100--Sobic002G191000 Sobic010G051100--Sobic006G035600 Sobic010G051100--Sobic004G053900 Sobic010G051100--Sobic003G118100 Sobic010G051100--Sobic002G113400 Sobic003G179500 Sobic003G179500 Sobic010G051100--Sobic003G179500 Sobic002G246900 Sobic002G246900 Sobic010G051100--Sobic002G246900 Sobic010G191000 Sobic010G191000 Sobic010G051100--Sobic010G191000
Octagon: transcription factors


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