Gene annotation
Transcriptome id Sobic.001G346500.1,Sobic.001G346500.2
Synonym CAX2, Sb01g033220, atcax2
Functional annotation Ca exchanger (PubMedID : 22196357)
sodium/calcium exchanger protein, putative, expressed
UniProt C5WXK5 , C5WXL0
Pfam PF01699
Panther DB PTHR31503 PTHR31503:SF16
NCBI CDD KOG1397; Ca2+/H+ antiporter VCX1 and related proteins
KEGG Orthology K07300; chaA, Ca2+:H+ antiporter
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT3G13320 : cation exchanger 5,cation exchanger 2
RAP-DB (Rice) LOC_Os03g27960.2,LOC_Os03g27960.1 : sodium/calcium exchanger protein, putative, expressed
MaizeGDB (Corn) Zm00025a002768 , Zm00025a052136
Brachypodium KQK21375
Barley HORVU4Hr1G037210.9 , HORVU4Hr1G037210.8 , HORVU4Hr1G037210.5 , HORVU4Hr1G037210.4 , HORVU4Hr1G037210.7 , HORVU4Hr1G037210.6 , HORVU4Hr1G037210.1 , HORVU4Hr1G037210.3 , HORVU4Hr1G037210.2 , HORVU4Hr1G037210.10
Wheat TraesCS4D02G156900 , TraesCS4D02G156900 , TraesCS4A02G156500 , TraesCS4B02G161500 , TraesCS4B02G161500 , TraesCS4B02G161500 , TraesCS4B02G161500
Populus -


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cDNA sequences
Sobic.001G346500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G216700 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed K13947: auxin efflux carrier family protein
2 Sobic.008G023300 stripe rust resistance protein Yr10, putative, expressed -
3 Sobic.002G197000 cytochrome P450 72A1, putative, expressed K10717: cytokinin trans-hydroxylase
4 Sobic.002G274600 glycosyl transferase family 8 protein, expressed -
5 Sobic.002G381400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed K01087: trehalose 6-phosphate phosphatase
6 Sobic.008G071050 - K12589: RRP42, exosome complex component RRP42
7 Sobic.002G310300 - -
8 Sobic.002G271300 NC domain-containing protein, putative, expressed -
9 Sobic.002G101300 erythronate-4-phosphate dehydrogenase domain containing protein, expressed -
10 Sobic.010G250300 ANTH/ENTH domain containing protein, putative, expressed -
11 Sobic.007G127500 - -
12 Sobic.001G102100 DUF617 domain containing protein, expressed -
13 Sobic.007G127550 - -
14 Sobic.001G500400 kinesin motor domain containing protein, expressed -
15 Sobic.003G087700 glycosyltransferase protein, putative, expressed -
16 Sobic.004G251600 leaf senescence related protein, putative, expressed -
17 Sobic.004G275800 U-box, putative, expressed -
18 Sobic.002G090500 calreticulin precursor protein, putative, expressed K08057: calreticulin
19 Sobic.002G153000 oxidoreductase domain protein, putative, expressed -
20 Sobic.004G035400 PFT1, putative, expressed K04733: interleukin-1 receptor-associated kinase 4


Gene co-expression network
sample Sobic001G346500 Sobic001G346500 Sobic010G216700 Sobic010G216700 Sobic001G346500--Sobic010G216700 Sobic008G023300 Sobic008G023300 Sobic001G346500--Sobic008G023300 Sobic002G197000 Sobic002G197000 Sobic001G346500--Sobic002G197000 Sobic002G274600 Sobic002G274600 Sobic001G346500--Sobic002G274600 Sobic002G381400 Sobic002G381400 Sobic001G346500--Sobic002G381400 Sobic008G071050 Sobic008G071050 Sobic001G346500--Sobic008G071050 Sobic002G310300 Sobic002G310300 Sobic001G346500--Sobic002G310300 Sobic002G271300 Sobic002G271300 Sobic001G346500--Sobic002G271300 Sobic002G101300 Sobic002G101300 Sobic001G346500--Sobic002G101300 Sobic002G118900 Sobic002G118900 Sobic010G216700--Sobic002G118900 Sobic010G216700--Sobic002G274600 Sobic005G080600 Sobic005G080600 Sobic010G216700--Sobic005G080600 Sobic007G007300 Sobic007G007300 Sobic010G216700--Sobic007G007300 Sobic007G220400 Sobic007G220400 Sobic010G216700--Sobic007G220400 Sobic010G168400 Sobic010G168400 Sobic010G216700--Sobic010G168400 Sobic002G003400 Sobic002G003400 Sobic010G216700--Sobic002G003400 Sobic006G266800 Sobic006G266800 Sobic010G216700--Sobic006G266800 Sobic010G152300 Sobic010G152300 Sobic010G216700--Sobic010G152300 Sobic007G127500 Sobic007G127500 Sobic008G023300--Sobic007G127500 Sobic007G127550 Sobic007G127550 Sobic008G023300--Sobic007G127550 Sobic010G089600 Sobic010G089600 Sobic008G023300--Sobic010G089600 Sobic004G184101 Sobic004G184101 Sobic008G023300--Sobic004G184101 Sobic008G023300--Sobic002G381400 Sobic001G213666 Sobic001G213666 Sobic008G023300--Sobic001G213666 Sobic004G035400 Sobic004G035400 Sobic008G023300--Sobic004G035400 Sobic010G250300 Sobic010G250300 Sobic008G023300--Sobic010G250300 Sobic003G187700 Sobic003G187700 Sobic008G023300--Sobic003G187700 Sobic009G084400 Sobic009G084400 Sobic002G197000--Sobic009G084400 Sobic002G029500 Sobic002G029500 Sobic002G197000--Sobic002G029500 Sobic002G197000--Sobic002G274600 Sobic006G230100 Sobic006G230100 Sobic002G197000--Sobic006G230100 Sobic007G064900 Sobic007G064900 Sobic002G197000--Sobic007G064900 Sobic006G092100 Sobic006G092100 Sobic002G197000--Sobic006G092100 Sobic004G299500 Sobic004G299500 Sobic002G197000--Sobic004G299500 Sobic005G226400 Sobic005G226400 Sobic002G197000--Sobic005G226400 Sobic006G059800 Sobic006G059800 Sobic002G197000--Sobic006G059800 Sobic002G274600--Sobic009G084400 Sobic002G274600--Sobic002G197000 Sobic004G079900 Sobic004G079900 Sobic002G274600--Sobic004G079900 Sobic010G010000 Sobic010G010000 Sobic002G274600--Sobic010G010000 Sobic004G014600 Sobic004G014600 Sobic002G274600--Sobic004G014600 Sobic001G218400 Sobic001G218400 Sobic002G274600--Sobic001G218400 Sobic002G029600 Sobic002G029600 Sobic002G274600--Sobic002G029600 Sobic006G171100 Sobic006G171100 Sobic002G274600--Sobic006G171100 Sobic005G106300 Sobic005G106300 Sobic002G274600--Sobic005G106300 Sobic002G381400--Sobic008G023300 Sobic002G381400--Sobic004G035400 Sobic002G381400--Sobic010G089600 Sobic002G381400--Sobic004G184101 Sobic002G381400--Sobic007G127550 Sobic001G140000 Sobic001G140000 Sobic002G381400--Sobic001G140000 Sobic010G189432 Sobic010G189432 Sobic002G381400--Sobic010G189432 Sobic002G381400--Sobic001G213666 Sobic004G261800 Sobic004G261800 Sobic002G381400--Sobic004G261800 Sobic008G018200 Sobic008G018200 Sobic008G071050--Sobic008G018200 Sobic004G198300 Sobic004G198300 Sobic008G071050--Sobic004G198300 Sobic008G071050--Sobic001G346500 Sobic010G182000 Sobic010G182000 Sobic008G071050--Sobic010G182000 Sobic008G071050--Sobic004G261800 Sobic002G420100 Sobic002G420100 Sobic008G071050--Sobic002G420100 Sobic002G186200 Sobic002G186200 Sobic008G071050--Sobic002G186200 Sobic009G042000 Sobic009G042000 Sobic008G071050--Sobic009G042000 Sobic003G293400 Sobic003G293400 Sobic008G071050--Sobic003G293400 Sobic001G500400 Sobic001G500400 Sobic002G310300--Sobic001G500400 Sobic003G118100 Sobic003G118100 Sobic002G310300--Sobic003G118100 Sobic001G323400 Sobic001G323400 Sobic002G310300--Sobic001G323400 Sobic002G297500 Sobic002G297500 Sobic002G310300--Sobic002G297500 Sobic004G053900 Sobic004G053900 Sobic002G310300--Sobic004G053900 Sobic006G035600 Sobic006G035600 Sobic002G310300--Sobic006G035600 Sobic010G042600 Sobic010G042600 Sobic002G310300--Sobic010G042600 Sobic010G269800 Sobic010G269800 Sobic002G310300--Sobic010G269800 Sobic010G051100 Sobic010G051100 Sobic002G310300--Sobic010G051100 Sobic009G059500 Sobic009G059500 Sobic002G271300--Sobic009G059500 Sobic002G186900 Sobic002G186900 Sobic002G271300--Sobic002G186900 Sobic005G022500 Sobic005G022500 Sobic002G271300--Sobic005G022500 Sobic010G131400 Sobic010G131400 Sobic002G271300--Sobic010G131400 Sobic008G168100 Sobic008G168100 Sobic002G271300--Sobic008G168100 Sobic002G254900 Sobic002G254900 Sobic002G271300--Sobic002G254900 Sobic003G087700 Sobic003G087700 Sobic002G271300--Sobic003G087700 Sobic008G062900 Sobic008G062900 Sobic002G271300--Sobic008G062900 Sobic010G114000 Sobic010G114000 Sobic002G271300--Sobic010G114000 Sobic010G101600 Sobic010G101600 Sobic002G101300--Sobic010G101600 Sobic010G018500 Sobic010G018500 Sobic002G101300--Sobic010G018500 Sobic002G368600 Sobic002G368600 Sobic002G101300--Sobic002G368600 Sobic003G261100 Sobic003G261100 Sobic002G101300--Sobic003G261100 Sobic003G045600 Sobic003G045600 Sobic002G101300--Sobic003G045600 Sobic006G259401 Sobic006G259401 Sobic002G101300--Sobic006G259401 Sobic002G101300--Sobic002G271300 Sobic004G257000 Sobic004G257000 Sobic002G101300--Sobic004G257000 Sobic001G392200 Sobic001G392200 Sobic002G101300--Sobic001G392200
Octagon: transcription factors


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