Gene annotation
Transcriptome id Sobic.008G071050.1
Synonym -
Functional annotation -
UniProt A0A1Z5R634
Pfam PF03725 PF01138
Panther DB PTHR11097 PTHR11097:SF8
NCBI CDD KOG1612; Exosomal 3'-5' exoribonuclease complex, subunit Rrp42
KEGG Orthology K12589; RRP42, exosome complex component RRP42
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G07750 : 3\'-5\'-exoribonuclease family protein
RAP-DB (Rice) LOC_Os12g21500.1 : exosome complex exonuclease, putative, expressed
MaizeGDB (Corn) Zm00025a018578 , Zm00025a018574 , Zm00025a018576
Brachypodium KQJ95504 , KQK16179 , PNT75061 , KQJ95503 , KQK16180
Barley HORVU7Hr1G072710.4 , HORVU7Hr1G072710.5 , HORVU7Hr1G072710.6 , HORVU7Hr1G072710.7 , HORVU7Hr1G072710.2 , HORVU7Hr1G072710.3 , HORVU7Hr1G072710.8 , HORVU7Hr1G072710.9 , HORVU7Hr1G072710.14 , HORVU7Hr1G072710.12 , HORVU7Hr1G072710.13 , HORVU7Hr1G072710.10 , HORVU7Hr1G072710.11
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G018200 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
2 Sobic.004G198300 expressed protein -
3 Sobic.001G346500 Ca exchanger(PubMedID : 22196357)@sodium/calcium exchanger protein, putative, expressed K07300: chaA, Ca2+:H+ antiporter
4 Sobic.010G182000 26S protease regulatory subunit, putative, expressed K03066: PSMC5, 26S proteasome regulatory subunit T6
5 Sobic.004G261800 sugar-responsive gene(PubMedID : 25496467)@pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed K00895: pfp, diphosphate-dependent phosphofructokinase
6 Sobic.002G420100 glycosyl transferase, family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
7 Sobic.002G186200 ASC1, putative, expressed K04710: CERS1_2_3_4, ceramide synthetase
8 Sobic.009G042000 expressed protein -
9 Sobic.003G293400 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
10 Sobic.010G188900 PPR repeat domain containing protein, putative, expressed -
11 Sobic.003G372200 AGC_AGC_other_PDK1_Pk61C.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed K06276: 3-phosphoinositide dependent protein kinase-1
12 Sobic.002G201700 phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
13 Sobic.002G222200 OsPDIL2-3 protein disulfide isomerase PDIL2-3, expressed K09584: PDIA6, protein disulfide-isomerase A6
14 Sobic.002G167100 phosphatidate cytidylyltransferase, putative, expressed K00981: E2.7.7.41, CDS1, CDS2, phosphatidate cytidylyltransferase
15 Sobic.007G111300 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
16 Sobic.003G423700 endonuclease, putative, expressed K08991: crossover junction endonuclease MUS81
17 Sobic.002G308000 powdery mildew resistant protein 5, putative, expressed -
18 Sobic.009G244900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cycloartenol-C-24-methyltransferase 1, putative, expressed K00559: SMT1, sterol 24-C-methyltransferase
19 Sobic.010G253200 GHMP kinases ATP-binding protein, putative, expressed K12446: L-arabinokinase
20 Sobic.001G230801 - -


Gene co-expression network
sample Sobic008G071050 Sobic008G071050 Sobic008G018200 Sobic008G018200 Sobic008G071050--Sobic008G018200 Sobic004G198300 Sobic004G198300 Sobic008G071050--Sobic004G198300 Sobic001G346500 Sobic001G346500 Sobic008G071050--Sobic001G346500 Sobic010G182000 Sobic010G182000 Sobic008G071050--Sobic010G182000 Sobic004G261800 Sobic004G261800 Sobic008G071050--Sobic004G261800 Sobic002G420100 Sobic002G420100 Sobic008G071050--Sobic002G420100 Sobic002G186200 Sobic002G186200 Sobic008G071050--Sobic002G186200 Sobic009G042000 Sobic009G042000 Sobic008G071050--Sobic009G042000 Sobic003G293400 Sobic003G293400 Sobic008G071050--Sobic003G293400 Sobic008G018200--Sobic002G420100 Sobic002G308000 Sobic002G308000 Sobic008G018200--Sobic002G308000 Sobic007G189100 Sobic007G189100 Sobic008G018200--Sobic007G189100 Sobic002G222200 Sobic002G222200 Sobic008G018200--Sobic002G222200 Sobic001G528100 Sobic001G528100 Sobic008G018200--Sobic001G528100 Sobic002G392400 Sobic002G392400 Sobic008G018200--Sobic002G392400 Sobic010G253200 Sobic010G253200 Sobic008G018200--Sobic010G253200 Sobic008G018200--Sobic003G293400 Sobic004G011700 Sobic004G011700 Sobic008G018200--Sobic004G011700 Sobic004G198300--Sobic003G293400 Sobic004G026600 Sobic004G026600 Sobic004G198300--Sobic004G026600 Sobic007G086600 Sobic007G086600 Sobic004G198300--Sobic007G086600 Sobic010G255400 Sobic010G255400 Sobic004G198300--Sobic010G255400 Sobic005G067966 Sobic005G067966 Sobic004G198300--Sobic005G067966 Sobic004G198300--Sobic002G308000 Sobic002G313100 Sobic002G313100 Sobic004G198300--Sobic002G313100 Sobic004G198300--Sobic002G392400 Sobic005G087300 Sobic005G087300 Sobic004G198300--Sobic005G087300 Sobic010G216700 Sobic010G216700 Sobic001G346500--Sobic010G216700 Sobic008G023300 Sobic008G023300 Sobic001G346500--Sobic008G023300 Sobic002G197000 Sobic002G197000 Sobic001G346500--Sobic002G197000 Sobic002G274600 Sobic002G274600 Sobic001G346500--Sobic002G274600 Sobic002G381400 Sobic002G381400 Sobic001G346500--Sobic002G381400 Sobic001G346500--Sobic008G071050 Sobic002G310300 Sobic002G310300 Sobic001G346500--Sobic002G310300 Sobic002G271300 Sobic002G271300 Sobic001G346500--Sobic002G271300 Sobic002G101300 Sobic002G101300 Sobic001G346500--Sobic002G101300 Sobic010G182000--Sobic002G420100 Sobic003G423700 Sobic003G423700 Sobic010G182000--Sobic003G423700 Sobic008G156600 Sobic008G156600 Sobic010G182000--Sobic008G156600 Sobic008G104000 Sobic008G104000 Sobic010G182000--Sobic008G104000 Sobic001G072000 Sobic001G072000 Sobic010G182000--Sobic001G072000 Sobic009G163100 Sobic009G163100 Sobic010G182000--Sobic009G163100 Sobic001G400000 Sobic001G400000 Sobic010G182000--Sobic001G400000 Sobic002G172401 Sobic002G172401 Sobic010G182000--Sobic002G172401 Sobic005G050400 Sobic005G050400 Sobic010G182000--Sobic005G050400 Sobic003G013700 Sobic003G013700 Sobic004G261800--Sobic003G013700 Sobic004G261800--Sobic002G186200 Sobic007G014700 Sobic007G014700 Sobic004G261800--Sobic007G014700 Sobic004G261800--Sobic010G253200 Sobic004G261800--Sobic002G420100 Sobic002G201700 Sobic002G201700 Sobic004G261800--Sobic002G201700 Sobic001G303900 Sobic001G303900 Sobic004G261800--Sobic001G303900 Sobic004G261800--Sobic003G423700 Sobic004G261800--Sobic008G156600 Sobic002G420100--Sobic010G253200 Sobic002G420100--Sobic010G182000 Sobic004G241300 Sobic004G241300 Sobic002G420100--Sobic004G241300 Sobic002G420100--Sobic003G423700 Sobic002G420100--Sobic008G156600 Sobic002G420100--Sobic003G293400 Sobic001G131900 Sobic001G131900 Sobic002G420100--Sobic001G131900 Sobic002G420100--Sobic001G400000 Sobic002G420100--Sobic008G104000 Sobic002G186200--Sobic004G261800 Sobic002G186200--Sobic003G423700 Sobic002G186200--Sobic010G253200 Sobic002G186200--Sobic002G420100 Sobic002G186200--Sobic004G241300 Sobic001G126800 Sobic001G126800 Sobic002G186200--Sobic001G126800 Sobic002G186200--Sobic008G156600 Sobic002G186200--Sobic003G013700 Sobic002G186200--Sobic001G400000 Sobic007G151500 Sobic007G151500 Sobic009G042000--Sobic007G151500 Sobic009G042000--Sobic010G253200 Sobic009G042000--Sobic003G293400 Sobic009G042000--Sobic004G241300 Sobic009G042000--Sobic002G201700 Sobic009G042000--Sobic008G156600 Sobic009G042000--Sobic002G420100 Sobic009G025700 Sobic009G025700 Sobic009G042000--Sobic009G025700 Sobic009G042000--Sobic003G423700 Sobic003G293400--Sobic001G131900 Sobic003G352900 Sobic003G352900 Sobic003G293400--Sobic003G352900 Sobic003G293400--Sobic004G198300 Sobic001G076600 Sobic001G076600 Sobic003G293400--Sobic001G076600 Sobic003G293400--Sobic002G420100 Sobic004G038400 Sobic004G038400 Sobic003G293400--Sobic004G038400 Sobic003G293400--Sobic004G026600 Sobic004G298600 Sobic004G298600 Sobic003G293400--Sobic004G298600 Sobic007G144100 Sobic007G144100 Sobic003G293400--Sobic007G144100
Octagon: transcription factors


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