Gene annotation
Transcriptome id Sobic.004G275800.1
Synonym PUB25, Sb04g031280
Functional annotation U-box, putative, expressed
UniProt C5Y0S3
Pfam PF04564
Panther DB PTHR22849 PTHR22849:SF29
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016567; protein ubiquitination GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT2G35930 : plant U-box 23
RAP-DB (Rice) LOC_Os02g46500.1 : U-box, putative, expressed
MaizeGDB (Corn) Zm00025a021597 , Zm00025a056714
Brachypodium KQK00835 , KQJ84286
Barley HORVU6Hr1G066870.2 , HORVU6Hr1G066870.4 , HORVU6Hr1G066870.1 , HORVU6Hr1G066870.3
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G096100 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
2 Sobic.002G082800 DUF567 domain containing protein, putative, expressed -
3 Sobic.004G251600 leaf senescence related protein, putative, expressed -
4 Sobic.002G118900 auxin-induced protein 5NG4, putative, expressed -
5 Sobic.007G127400 oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed -
6 Sobic.010G066800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
7 Sobic.003G269900 OsSub12 - Putative Subtilisin homologue, expressed -
8 Sobic.008G158266 - -
9 Sobic.010G158400 zinc finger, C3HC4 type domain containing protein, expressed -
10 Sobic.010G139100 serine/threonine-protein kinase, putative, expressed -
11 Sobic.009G032900 peroxidase precursor, putative, expressed K00430: peroxidase
12 Sobic.003G349400 expressed protein -
13 Sobic.001G346500 Ca exchanger(PubMedID : 22196357)@sodium/calcium exchanger protein, putative, expressed K07300: chaA, Ca2+:H+ antiporter
14 Sobic.004G351200 -(PubMedID : 24879770)@Up-regulated by osmotic stress.(PubMedID : 24879770)@aquaporin protein, putative, expressed K09872: aquaporin PIP
15 Sobic.010G216700 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed K13947: auxin efflux carrier family protein
16 Sobic.003G132400 OsSubt1 - Putative Subtilisin homologue, expressed -
17 Sobic.001G308600 POEI31 - Pollen Ole e I allergen and extensin family protein precursor, putative, expressed -
18 Sobic.002G122400 GLTP domain containing protein, putative, expressed -
19 Sobic.006G150100 Down-regulated by silicon application(PubMedID : 24879770)@Up-regulated by osmotic stress.(PubMedID : 24879770)@aquaporin protein, putative, expressed K09872: aquaporin PIP
20 Sobic.002G068000 expressed protein -


Gene co-expression network
sample Sobic004G275800 Sobic004G275800 Sobic006G096100 Sobic006G096100 Sobic004G275800--Sobic006G096100 Sobic002G082800 Sobic002G082800 Sobic004G275800--Sobic002G082800 Sobic004G251600 Sobic004G251600 Sobic004G275800--Sobic004G251600 Sobic002G118900 Sobic002G118900 Sobic004G275800--Sobic002G118900 Sobic007G127400 Sobic007G127400 Sobic004G275800--Sobic007G127400 Sobic010G066800 Sobic010G066800 Sobic004G275800--Sobic010G066800 Sobic003G269900 Sobic003G269900 Sobic004G275800--Sobic003G269900 Sobic008G158266 Sobic008G158266 Sobic004G275800--Sobic008G158266 Sobic010G158400 Sobic010G158400 Sobic004G275800--Sobic010G158400 Sobic006G096100--Sobic007G127400 Sobic006G096100--Sobic002G082800 Sobic006G096100--Sobic004G275800 Sobic007G012700 Sobic007G012700 Sobic006G096100--Sobic007G012700 Sobic006G224000 Sobic006G224000 Sobic006G096100--Sobic006G224000 Sobic006G133200 Sobic006G133200 Sobic006G096100--Sobic006G133200 Sobic001G395800 Sobic001G395800 Sobic006G096100--Sobic001G395800 Sobic002G101300 Sobic002G101300 Sobic006G096100--Sobic002G101300 Sobic004G083500 Sobic004G083500 Sobic006G096100--Sobic004G083500 Sobic002G082800--Sobic007G127400 Sobic002G082800--Sobic006G096100 Sobic002G090300 Sobic002G090300 Sobic002G082800--Sobic002G090300 Sobic002G082800--Sobic004G275800 Sobic002G082800--Sobic001G395800 Sobic003G218400 Sobic003G218400 Sobic002G082800--Sobic003G218400 Sobic003G132400 Sobic003G132400 Sobic002G082800--Sobic003G132400 Sobic009G230900 Sobic009G230900 Sobic002G082800--Sobic009G230900 Sobic006G255400 Sobic006G255400 Sobic002G082800--Sobic006G255400 Sobic010G250300 Sobic010G250300 Sobic004G251600--Sobic010G250300 Sobic004G232700 Sobic004G232700 Sobic004G251600--Sobic004G232700 Sobic007G212100 Sobic007G212100 Sobic004G251600--Sobic007G212100 Sobic003G087700 Sobic003G087700 Sobic004G251600--Sobic003G087700 Sobic001G102100 Sobic001G102100 Sobic004G251600--Sobic001G102100 Sobic004G251600--Sobic007G127400 Sobic009G176400 Sobic009G176400 Sobic004G251600--Sobic009G176400 Sobic004G251600--Sobic004G275800 Sobic007G127500 Sobic007G127500 Sobic004G251600--Sobic007G127500 Sobic002G118900--Sobic003G269900 Sobic002G115600 Sobic002G115600 Sobic002G118900--Sobic002G115600 Sobic001G263300 Sobic001G263300 Sobic002G118900--Sobic001G263300 Sobic005G216500 Sobic005G216500 Sobic002G118900--Sobic005G216500 Sobic002G003400 Sobic002G003400 Sobic002G118900--Sobic002G003400 Sobic006G196400 Sobic006G196400 Sobic002G118900--Sobic006G196400 Sobic009G032900 Sobic009G032900 Sobic002G118900--Sobic009G032900 Sobic003G046700 Sobic003G046700 Sobic002G118900--Sobic003G046700 Sobic005G080600 Sobic005G080600 Sobic002G118900--Sobic005G080600 Sobic007G127400--Sobic002G082800 Sobic007G127400--Sobic006G096100 Sobic007G127400--Sobic010G250300 Sobic007G127400--Sobic007G212100 Sobic007G127400--Sobic004G251600 Sobic007G127400--Sobic004G232700 Sobic008G023300 Sobic008G023300 Sobic007G127400--Sobic008G023300 Sobic004G261800 Sobic004G261800 Sobic007G127400--Sobic004G261800 Sobic004G232500 Sobic004G232500 Sobic007G127400--Sobic004G232500 Sobic007G100700 Sobic007G100700 Sobic010G066800--Sobic007G100700 Sobic003G426500 Sobic003G426500 Sobic010G066800--Sobic003G426500 Sobic003G349400 Sobic003G349400 Sobic010G066800--Sobic003G349400 Sobic002G068000 Sobic002G068000 Sobic010G066800--Sobic002G068000 Sobic003G182200 Sobic003G182200 Sobic010G066800--Sobic003G182200 Sobic007G008600 Sobic007G008600 Sobic010G066800--Sobic007G008600 Sobic010G066800--Sobic009G032900 Sobic008G011700 Sobic008G011700 Sobic010G066800--Sobic008G011700 Sobic002G255000 Sobic002G255000 Sobic010G066800--Sobic002G255000 Sobic003G269900--Sobic002G118900 Sobic010G115000 Sobic010G115000 Sobic003G269900--Sobic010G115000 Sobic010G139100 Sobic010G139100 Sobic003G269900--Sobic010G139100 Sobic003G269900--Sobic009G032900 Sobic003G269900--Sobic005G216500 Sobic003G269900--Sobic002G115600 Sobic003G269900--Sobic010G158400 Sobic005G216700 Sobic005G216700 Sobic003G269900--Sobic005G216700 Sobic003G185300 Sobic003G185300 Sobic003G269900--Sobic003G185300 Sobic004G323000 Sobic004G323000 Sobic008G158266--Sobic004G323000 Sobic008G158266--Sobic010G139100 Sobic006G135500 Sobic006G135500 Sobic008G158266--Sobic006G135500 Sobic002G122400 Sobic002G122400 Sobic008G158266--Sobic002G122400 Sobic005G161200 Sobic005G161200 Sobic008G158266--Sobic005G161200 Sobic001G314100 Sobic001G314100 Sobic008G158266--Sobic001G314100 Sobic010G174100 Sobic010G174100 Sobic008G158266--Sobic010G174100 Sobic010G006200 Sobic010G006200 Sobic008G158266--Sobic010G006200 Sobic008G158266--Sobic009G032900 Sobic010G158400--Sobic002G068000 Sobic010G158400--Sobic009G032900 Sobic010G158400--Sobic003G426500 Sobic010G158400--Sobic003G349400 Sobic004G351200 Sobic004G351200 Sobic010G158400--Sobic004G351200 Sobic010G158400--Sobic003G185300 Sobic010G158400--Sobic005G216700 Sobic009G259800 Sobic009G259800 Sobic010G158400--Sobic009G259800 Sobic006G150100 Sobic006G150100 Sobic010G158400--Sobic006G150100
Octagon: transcription factors


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