Gene annotation
Transcriptome id Sobic.001G497000.1
Synonym SDE3, Sb01g046430
Functional annotation RNA helicase SDE3, putative, expressed
UniProt C5WWZ2
Pfam PF13086 PF13087
Panther DB PTHR10887 PTHR10887:SF362
NCBI CDD KOG1804; RNA helicase
KEGG Orthology K18422; helicase MOV-10
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G05460 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os03g06440.1 : RNA helicase SDE3, putative, expressed
MaizeGDB (Corn) Zm00025a053454 , Zm00025a000753
Brachypodium PNT78148 , PNT78149 , KQK23536
Barley HORVU4Hr1G073340.2 , HORVU4Hr1G073340.6 , HORVU4Hr1G073340.5 , HORVU4Hr1G073340.4 , HORVU4Hr1G073340.3 , HORVU4Hr1G073340.1
Wheat TraesCS4B02G276500 , TraesCS4D02G275100 , TraesCS4A02G029400
Populus -


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cDNA sequences
Sobic.001G497000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G120400 methyltransferase, putative, expressed -
2 Sobic.004G006000 hypothetical protein -
3 Sobic.002G173400 expressed protein -
4 Sobic.003G194800 EF hand family protein, putative, expressed -
5 Sobic.003G299500 expressed protein -
6 Sobic.003G045000 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
7 Sobic.010G143600 ATP-binding region, ATPase-like domain containing protein, expressed -
8 Sobic.002G052800 FAR1 family protein, expressed -
9 Sobic.007G034200 expressed protein K10875: RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
10 Sobic.003G135500 sugar transporter superfamily, putative, expressed -
11 Sobic.008G169400 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin response factor, putative, expressed -
12 Sobic.008G047500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.003G336900 inactive receptor kinase At2g26730 precursor, putative, expressed -
14 Sobic.008G085950 - -
15 Sobic.009G024900 CAMK_CAMK_like_Aur_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
16 Sobic.009G158900 zinc finger, C3HC4 type domain containing protein, expressed -
17 Sobic.001G361200 expressed protein -
18 Sobic.007G076200 VERNALIZATION-INSENSITIVE, putative, expressed -
19 Sobic.002G235900 phosphatidylinositol 3- and 4-kinase family protein, putative, expressed -
20 Sobic.001G381500 lung seven transmembrane domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G497000 Sobic001G497000 Sobic009G120400 Sobic009G120400 Sobic001G497000--Sobic009G120400 Sobic004G006000 Sobic004G006000 Sobic001G497000--Sobic004G006000 Sobic002G173400 Sobic002G173400 Sobic001G497000--Sobic002G173400 Sobic003G194800 Sobic003G194800 Sobic001G497000--Sobic003G194800 Sobic003G299500 Sobic003G299500 Sobic001G497000--Sobic003G299500 Sobic003G045000 Sobic003G045000 Sobic001G497000--Sobic003G045000 Sobic010G143600 Sobic010G143600 Sobic001G497000--Sobic010G143600 Sobic002G052800 Sobic002G052800 Sobic001G497000--Sobic002G052800 Sobic007G034200 Sobic007G034200 Sobic001G497000--Sobic007G034200 Sobic009G120400--Sobic002G173400 Sobic002G426100 Sobic002G426100 Sobic009G120400--Sobic002G426100 Sobic009G120400--Sobic007G034200 Sobic009G120400--Sobic003G194800 Sobic004G215600 Sobic004G215600 Sobic009G120400--Sobic004G215600 Sobic007G105700 Sobic007G105700 Sobic009G120400--Sobic007G105700 Sobic009G120400--Sobic003G299500 Sobic007G186400 Sobic007G186400 Sobic009G120400--Sobic007G186400 Sobic001G051400 Sobic001G051400 Sobic009G120400--Sobic001G051400 Sobic004G006000--Sobic001G497000 Sobic003G336900 Sobic003G336900 Sobic004G006000--Sobic003G336900 Sobic004G006000--Sobic009G120400 Sobic004G006000--Sobic002G173400 Sobic001G211500 Sobic001G211500 Sobic004G006000--Sobic001G211500 Sobic001G008300 Sobic001G008300 Sobic004G006000--Sobic001G008300 Sobic004G102200 Sobic004G102200 Sobic004G006000--Sobic004G102200 Sobic008G169400 Sobic008G169400 Sobic004G006000--Sobic008G169400 Sobic004G006000--Sobic002G052800 Sobic008G131900 Sobic008G131900 Sobic002G173400--Sobic008G131900 Sobic002G173400--Sobic009G120400 Sobic002G173400--Sobic003G194800 Sobic008G047500 Sobic008G047500 Sobic002G173400--Sobic008G047500 Sobic002G173400--Sobic002G052800 Sobic010G038200 Sobic010G038200 Sobic002G173400--Sobic010G038200 Sobic002G173400--Sobic010G143600 Sobic004G000400 Sobic004G000400 Sobic002G173400--Sobic004G000400 Sobic005G060100 Sobic005G060100 Sobic002G173400--Sobic005G060100 Sobic008G085950 Sobic008G085950 Sobic003G194800--Sobic008G085950 Sobic003G194800--Sobic008G047500 Sobic003G194800--Sobic009G120400 Sobic003G204100 Sobic003G204100 Sobic003G194800--Sobic003G204100 Sobic003G194800--Sobic002G173400 Sobic003G194800--Sobic003G299500 Sobic003G194800--Sobic007G105700 Sobic003G194800--Sobic004G215600 Sobic003G420400 Sobic003G420400 Sobic003G194800--Sobic003G420400 Sobic003G299500--Sobic007G034200 Sobic003G299500--Sobic003G194800 Sobic004G106250 Sobic004G106250 Sobic003G299500--Sobic004G106250 Sobic003G299500--Sobic009G120400 Sobic003G016500 Sobic003G016500 Sobic003G299500--Sobic003G016500 Sobic001G123600 Sobic001G123600 Sobic003G299500--Sobic001G123600 Sobic006G245900 Sobic006G245900 Sobic003G299500--Sobic006G245900 Sobic002G235900 Sobic002G235900 Sobic003G299500--Sobic002G235900 Sobic006G191200 Sobic006G191200 Sobic003G299500--Sobic006G191200 Sobic003G045000--Sobic008G085950 Sobic003G045000--Sobic008G047500 Sobic010G188900 Sobic010G188900 Sobic003G045000--Sobic010G188900 Sobic002G308000 Sobic002G308000 Sobic003G045000--Sobic002G308000 Sobic007G043700 Sobic007G043700 Sobic003G045000--Sobic007G043700 Sobic003G045000--Sobic003G194800 Sobic003G045000--Sobic007G105700 Sobic002G390800 Sobic002G390800 Sobic003G045000--Sobic002G390800 Sobic003G045000--Sobic009G120400 Sobic005G078700 Sobic005G078700 Sobic010G143600--Sobic005G078700 Sobic010G143600--Sobic002G173400 Sobic010G143600--Sobic003G194800 Sobic010G143600--Sobic009G120400 Sobic003G183466 Sobic003G183466 Sobic010G143600--Sobic003G183466 Sobic010G143600--Sobic003G204100 Sobic006G008300 Sobic006G008300 Sobic010G143600--Sobic006G008300 Sobic003G397100 Sobic003G397100 Sobic010G143600--Sobic003G397100 Sobic003G184666 Sobic003G184666 Sobic010G143600--Sobic003G184666 Sobic002G052800--Sobic010G038200 Sobic010G009700 Sobic010G009700 Sobic002G052800--Sobic010G009700 Sobic009G136000 Sobic009G136000 Sobic002G052800--Sobic009G136000 Sobic002G052800--Sobic002G173400 Sobic002G052800--Sobic005G060100 Sobic008G140600 Sobic008G140600 Sobic002G052800--Sobic008G140600 Sobic002G052800--Sobic008G131900 Sobic003G301800 Sobic003G301800 Sobic002G052800--Sobic003G301800 Sobic009G168100 Sobic009G168100 Sobic002G052800--Sobic009G168100 Sobic007G034200--Sobic003G299500 Sobic007G034200--Sobic009G120400 Sobic007G034200--Sobic001G051400 Sobic007G034200--Sobic001G123600 Sobic007G034200--Sobic003G194800 Sobic002G386900 Sobic002G386900 Sobic007G034200--Sobic002G386900 Sobic007G034200--Sobic006G191200 Sobic003G113300 Sobic003G113300 Sobic007G034200--Sobic003G113300 Sobic006G170900 Sobic006G170900 Sobic007G034200--Sobic006G170900
Octagon: transcription factors


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