Gene annotation
Transcriptome id Sobic.002G206700.1
Synonym SAMDC02, SAMDC, Sb02g025110, S-adenosyl-Met decarboxylase
Functional annotation - (PubMedID : 24813726)
CPuORF8 - conserved peptide uORF-containing transcript, expressed
UniProt C5XCY7 , C9DI39
Pfam PF01536
Panther DB PTHR11570 PTHR11570:SF3
NCBI CDD KOG0788; S-adenosylmethionine decarboxylase
KEGG Orthology K01611; speD, S-adenosylmethionine decarboxylase
Gene Ontology GO:0008295; spermidine biosynthetic process GO:0006597spermine biosynthetic process GO:0004014adenosylmethionine decarboxylase activity


Orthologs (automatic annotation)
TAIR AT3G02470 : S-adenosylmethionine decarboxylase
RAP-DB (Rice) LOC_Os09g25620.1 : CPuORF8 - conserved peptide uORF-containing transcript, expressed
MaizeGDB (Corn) Zm00025a047068
Brachypodium PNT64617 , KQJ90296
Barley HORVU5Hr1G064040.5 , HORVU5Hr1G064040.4 , HORVU5Hr1G064040.7 , HORVU5Hr1G064040.1 , HORVU5Hr1G064040.3 , HORVU5Hr1G064040.2 , HORVU5Hr1G064040.9 , HORVU5Hr1G064040.8 , HORVU2Hr1G086140.3 , HORVU2Hr1G086140.2 , HORVU2Hr1G086140.1 , HORVU2Hr1G086140.5 , HORVU2Hr1G086140.4
Wheat TraesCS2A02G355400
Populus -


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cDNA sequences
Sobic.002G206700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G206750 - -
2 Sobic.002G268700 hydroxymethylglutaryl-CoA synthase, putative, expressed K01641: hydroxymethylglutaryl-CoA synthase
3 Sobic.010G250400 OsSub52 - Putative Subtilisin homologue, expressed -
4 Sobic.010G252200 PPR repeat domain containing protein, putative, expressed -
5 Sobic.009G167900 CAMK_CAMK_like.29 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
6 Sobic.009G109300 POLA4 - Putative DNA polymerase alpha complex subunit, expressed K02684: DNA primase small subunit
7 Sobic.001G377700 expressed protein K10895: fanconi anemia group I protein
8 Sobic.003G289800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase, putative, expressed -
9 Sobic.007G125300 BRCA1 C Terminus domain containing protein, expressed -
10 Sobic.003G075400 expressed protein K07466: RFA1, RPA1, replication factor A1
11 Sobic.006G281400 expressed protein -
12 Sobic.001G532800 RNA recognition motif containing protein, putative, expressed K12893: splicing factor, arginine/serine-rich 4/5/6
13 Sobic.002G290000 helicase, putative, expressed K15362: BRIP1, BACH1, fanconi anemia group J protein
14 Sobic.004G053900 expressed protein -
15 Sobic.003G412800 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein -
16 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
17 Sobic.010G054100 SHR5-receptor-like kinase, putative, expressed -
18 Sobic.007G112100 enoyl-acyl-carrier-protein reductase NADH, chloroplast precursor, expressed K00208: enoyl-[acyl-carrier protein] reductase I
19 Sobic.003G315700 AAA-type ATPase family protein, putative, expressed -
20 Sobic.004G234300 DUF581 domain containing protein, expressed -


Gene co-expression network
sample Sobic002G206700 Sobic002G206700 Sobic002G206750 Sobic002G206750 Sobic002G206700--Sobic002G206750 Sobic002G268700 Sobic002G268700 Sobic002G206700--Sobic002G268700 Sobic010G250400 Sobic010G250400 Sobic002G206700--Sobic010G250400 Sobic010G252200 Sobic010G252200 Sobic002G206700--Sobic010G252200 Sobic009G167900 Sobic009G167900 Sobic002G206700--Sobic009G167900 Sobic009G109300 Sobic009G109300 Sobic002G206700--Sobic009G109300 Sobic001G377700 Sobic001G377700 Sobic002G206700--Sobic001G377700 Sobic003G289800 Sobic003G289800 Sobic002G206700--Sobic003G289800 Sobic007G125300 Sobic007G125300 Sobic002G206700--Sobic007G125300 Sobic006G193100 Sobic006G193100 Sobic002G206750--Sobic006G193100 Sobic002G206750--Sobic002G206700 Sobic003G315700 Sobic003G315700 Sobic002G206750--Sobic003G315700 Sobic002G206750--Sobic010G250400 Sobic009G076100 Sobic009G076100 Sobic002G206750--Sobic009G076100 Sobic002G206750--Sobic007G125300 Sobic007G219100 Sobic007G219100 Sobic002G206750--Sobic007G219100 Sobic004G053900 Sobic004G053900 Sobic002G206750--Sobic004G053900 Sobic006G126800 Sobic006G126800 Sobic002G206750--Sobic006G126800 Sobic002G232400 Sobic002G232400 Sobic002G268700--Sobic002G232400 Sobic001G348000 Sobic001G348000 Sobic002G268700--Sobic001G348000 Sobic004G231200 Sobic004G231200 Sobic002G268700--Sobic004G231200 Sobic004G069400 Sobic004G069400 Sobic002G268700--Sobic004G069400 Sobic007G048700 Sobic007G048700 Sobic002G268700--Sobic007G048700 Sobic010G080900 Sobic010G080900 Sobic002G268700--Sobic010G080900 Sobic002G070300 Sobic002G070300 Sobic002G268700--Sobic002G070300 Sobic004G064600 Sobic004G064600 Sobic002G268700--Sobic004G064600 Sobic002G426100 Sobic002G426100 Sobic002G268700--Sobic002G426100 Sobic009G188900 Sobic009G188900 Sobic010G250400--Sobic009G188900 Sobic005G153000 Sobic005G153000 Sobic010G250400--Sobic005G153000 Sobic002G021200 Sobic002G021200 Sobic010G250400--Sobic002G021200 Sobic003G147500 Sobic003G147500 Sobic010G250400--Sobic003G147500 Sobic002G168000 Sobic002G168000 Sobic010G250400--Sobic002G168000 Sobic009G207400 Sobic009G207400 Sobic010G250400--Sobic009G207400 Sobic007G187700 Sobic007G187700 Sobic010G250400--Sobic007G187700 Sobic001G054700 Sobic001G054700 Sobic010G250400--Sobic001G054700 Sobic001G532800 Sobic001G532800 Sobic010G250400--Sobic001G532800 Sobic010G252200--Sobic006G126800 Sobic005G210500 Sobic005G210500 Sobic010G252200--Sobic005G210500 Sobic009G081800 Sobic009G081800 Sobic010G252200--Sobic009G081800 Sobic001G486600 Sobic001G486600 Sobic010G252200--Sobic001G486600 Sobic003G184666 Sobic003G184666 Sobic010G252200--Sobic003G184666 Sobic006G119300 Sobic006G119300 Sobic010G252200--Sobic006G119300 Sobic001G268300 Sobic001G268300 Sobic010G252200--Sobic001G268300 Sobic002G362200 Sobic002G362200 Sobic010G252200--Sobic002G362200 Sobic003G045450 Sobic003G045450 Sobic010G252200--Sobic003G045450 Sobic009G167900--Sobic003G289800 Sobic010G151700 Sobic010G151700 Sobic009G167900--Sobic010G151700 Sobic003G412800 Sobic003G412800 Sobic009G167900--Sobic003G412800 Sobic002G215200 Sobic002G215200 Sobic009G167900--Sobic002G215200 Sobic004G270800 Sobic004G270800 Sobic009G167900--Sobic004G270800 Sobic008G083500 Sobic008G083500 Sobic009G167900--Sobic008G083500 Sobic003G183700 Sobic003G183700 Sobic009G167900--Sobic003G183700 Sobic003G201000 Sobic003G201000 Sobic009G167900--Sobic003G201000 Sobic003G179500 Sobic003G179500 Sobic009G167900--Sobic003G179500 Sobic007G112100 Sobic007G112100 Sobic009G109300--Sobic007G112100 Sobic006G051000 Sobic006G051000 Sobic009G109300--Sobic006G051000 Sobic010G103700 Sobic010G103700 Sobic009G109300--Sobic010G103700 Sobic006G195500 Sobic006G195500 Sobic009G109300--Sobic006G195500 Sobic001G238900 Sobic001G238900 Sobic009G109300--Sobic001G238900 Sobic002G230800 Sobic002G230800 Sobic009G109300--Sobic002G230800 Sobic009G109300--Sobic003G183700 Sobic009G109300--Sobic003G179500 Sobic002G246900 Sobic002G246900 Sobic009G109300--Sobic002G246900 Sobic002G290000 Sobic002G290000 Sobic001G377700--Sobic002G290000 Sobic001G377700--Sobic002G021200 Sobic001G377700--Sobic003G183700 Sobic005G110535 Sobic005G110535 Sobic001G377700--Sobic005G110535 Sobic003G055600 Sobic003G055600 Sobic001G377700--Sobic003G055600 Sobic001G377700--Sobic006G195500 Sobic001G377700--Sobic007G187700 Sobic001G377700--Sobic007G125300 Sobic005G157300 Sobic005G157300 Sobic001G377700--Sobic005G157300 Sobic002G383100 Sobic002G383100 Sobic003G289800--Sobic002G383100 Sobic009G087000 Sobic009G087000 Sobic003G289800--Sobic009G087000 Sobic001G051300 Sobic001G051300 Sobic003G289800--Sobic001G051300 Sobic003G289800--Sobic003G183700 Sobic003G420300 Sobic003G420300 Sobic003G289800--Sobic003G420300 Sobic003G289800--Sobic003G179500 Sobic003G289800--Sobic005G110535 Sobic003G389100 Sobic003G389100 Sobic003G289800--Sobic003G389100 Sobic010G147700 Sobic010G147700 Sobic003G289800--Sobic010G147700 Sobic007G125300--Sobic002G290000 Sobic007G125300--Sobic005G110535 Sobic008G148000 Sobic008G148000 Sobic007G125300--Sobic008G148000 Sobic007G125300--Sobic004G053900 Sobic001G109700 Sobic001G109700 Sobic007G125300--Sobic001G109700 Sobic007G125300--Sobic001G377700 Sobic002G204400 Sobic002G204400 Sobic007G125300--Sobic002G204400 Sobic003G118100 Sobic003G118100 Sobic007G125300--Sobic003G118100 Sobic002G113400 Sobic002G113400 Sobic007G125300--Sobic002G113400
Octagon: transcription factors


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