Gene annotation
Transcriptome id Sobic.010G077300.1
Synonym Sb10g006710, ATMSL10, MSL10
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543)
uncharacterized mscS family protein, putative, expressed
UniProt Q8W0U2
Pfam PF00924
Panther DB PTHR31618 PTHR31618:SF7
NCBI CDD KOG4629; Predicted mechanosensitive ion channel
KEGG Orthology -
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT5G12080 : mechanosensitive channel of small conductance-like 10
RAP-DB (Rice) LOC_Os06g10410.1 : uncharacterized mscS family protein, putative, expressed
MaizeGDB (Corn) Zm00025a042467 , Zm00025a049624
Brachypodium KQK19102
Barley HORVU7Hr1G034680.12 , HORVU7Hr1G034680.13 , HORVU7Hr1G034680.10 , HORVU7Hr1G034680.11 , HORVU7Hr1G034680.8 , HORVU7Hr1G034680.9 , HORVU7Hr1G034680.1 , HORVU7Hr1G034680.2 , HORVU7Hr1G034680.3 , HORVU7Hr1G034680.4 , HORVU7Hr1G034680.5 , HORVU7Hr1G034680.6 , HORVU7Hr1G034680.7
Wheat TraesCS7A02G166500 , TraesCS7B02G070900 , TraesCS7D02G167000 , TraesCS7D02G167000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G427300 uridine 5-monophosphate synthase, putative, expressed K13421: uridine monophosphate synthetase
2 Sobic.003G075400 expressed protein K07466: RFA1, RPA1, replication factor A1
3 Sobic.010G170000 Triacylglycerol biosynthesis defect 1(PubMedID : 26320239)@O-acyltransferase, putative, expressed K11155: diacylglycerol O-acyltransferase 1
4 Sobic.003G098300 hydroxyproline-rich glycoprotein family protein, putative, expressed -
5 Sobic.004G066500 chaperone protein clpB 1, putative, expressed K03695: ATP-dependent Clp protease ATP-binding subunit ClpB
6 Sobic.004G058600 aldehyde dehydrogenase, putative, expressed K17761: succinate-semialdehyde dehydrogenase, mitochondrial
7 Sobic.004G234300 DUF581 domain containing protein, expressed -
8 Sobic.001G493500 tetratricopeptide repeat domain containing protein, expressed -
9 Sobic.001G508200 multidrug resistance-associated protein, putative, expressed -
10 Sobic.008G191850 - -
11 Sobic.001G336200 "Grain Length3.2(Ortholog in rice:Adamski et al., 2009(PubMedID : 31659842)@cytochrome P450, putative, expressed -
12 Sobic.007G053100 amino acid permease family protein, putative, expressed -
13 Sobic.010G011900 expressed protein -
14 Sobic.006G208000 DNA repair ATPase-related, putative, expressed -
15 Sobic.010G222900 expressed protein -
16 Sobic.010G024600 aminomethyltransferase, putative, expressed K06980: tRNA-modifying protein YgfZ
17 Sobic.003G285900 pathogen-related protein, putative, expressed -
18 Sobic.002G010000 NLI interacting factor-like phosphatase, putative, expressed -
19 Sobic.001G092800 acyl-CoA-binding domain-containing protein 6, putative, expressed -
20 Sobic.010G175000 expressed protein -


Gene co-expression network
sample Sobic010G077300 Sobic010G077300 Sobic003G427300 Sobic003G427300 Sobic010G077300--Sobic003G427300 Sobic003G075400 Sobic003G075400 Sobic010G077300--Sobic003G075400 Sobic010G170000 Sobic010G170000 Sobic010G077300--Sobic010G170000 Sobic003G098300 Sobic003G098300 Sobic010G077300--Sobic003G098300 Sobic004G066500 Sobic004G066500 Sobic010G077300--Sobic004G066500 Sobic004G058600 Sobic004G058600 Sobic010G077300--Sobic004G058600 Sobic004G234300 Sobic004G234300 Sobic010G077300--Sobic004G234300 Sobic001G493500 Sobic001G493500 Sobic010G077300--Sobic001G493500 Sobic001G508200 Sobic001G508200 Sobic010G077300--Sobic001G508200 Sobic006G208000 Sobic006G208000 Sobic003G427300--Sobic006G208000 Sobic003G427300--Sobic001G508200 Sobic002G266300 Sobic002G266300 Sobic003G427300--Sobic002G266300 Sobic009G025500 Sobic009G025500 Sobic003G427300--Sobic009G025500 Sobic001G044300 Sobic001G044300 Sobic003G427300--Sobic001G044300 Sobic002G405700 Sobic002G405700 Sobic003G427300--Sobic002G405700 Sobic005G134700 Sobic005G134700 Sobic003G427300--Sobic005G134700 Sobic003G427300--Sobic003G098300 Sobic010G198900 Sobic010G198900 Sobic003G427300--Sobic010G198900 Sobic003G075400--Sobic010G077300 Sobic003G075400--Sobic004G066500 Sobic010G175000 Sobic010G175000 Sobic003G075400--Sobic010G175000 Sobic010G222900 Sobic010G222900 Sobic003G075400--Sobic010G222900 Sobic003G095800 Sobic003G095800 Sobic003G075400--Sobic003G095800 Sobic001G092800 Sobic001G092800 Sobic003G075400--Sobic001G092800 Sobic006G088400 Sobic006G088400 Sobic003G075400--Sobic006G088400 Sobic003G075400--Sobic004G234300 Sobic006G275500 Sobic006G275500 Sobic003G075400--Sobic006G275500 Sobic010G170000--Sobic003G427300 Sobic010G170000--Sobic004G066500 Sobic007G053100 Sobic007G053100 Sobic010G170000--Sobic007G053100 Sobic010G170000--Sobic010G077300 Sobic006G251500 Sobic006G251500 Sobic010G170000--Sobic006G251500 Sobic003G224600 Sobic003G224600 Sobic010G170000--Sobic003G224600 Sobic008G191850 Sobic008G191850 Sobic010G170000--Sobic008G191850 Sobic005G045700 Sobic005G045700 Sobic010G170000--Sobic005G045700 Sobic010G170000--Sobic002G266300 Sobic004G347500 Sobic004G347500 Sobic003G098300--Sobic004G347500 Sobic005G021000 Sobic005G021000 Sobic003G098300--Sobic005G021000 Sobic003G098300--Sobic006G208000 Sobic001G336200 Sobic001G336200 Sobic003G098300--Sobic001G336200 Sobic003G419500 Sobic003G419500 Sobic003G098300--Sobic003G419500 Sobic002G232900 Sobic002G232900 Sobic003G098300--Sobic002G232900 Sobic003G098300--Sobic001G508200 Sobic003G098300--Sobic009G025500 Sobic002G240000 Sobic002G240000 Sobic003G098300--Sobic002G240000 Sobic004G066500--Sobic008G191850 Sobic004G066500--Sobic007G053100 Sobic004G033200 Sobic004G033200 Sobic004G066500--Sobic004G033200 Sobic004G066500--Sobic003G427300 Sobic010G024600 Sobic010G024600 Sobic004G066500--Sobic010G024600 Sobic004G066500--Sobic003G098300 Sobic004G066500--Sobic002G266300 Sobic004G066500--Sobic001G044300 Sobic004G066500--Sobic001G508200 Sobic003G011000 Sobic003G011000 Sobic004G058600--Sobic003G011000 Sobic004G058600--Sobic010G024600 Sobic004G058600--Sobic001G508200 Sobic004G058600--Sobic004G066500 Sobic004G058600--Sobic004G033200 Sobic006G034300 Sobic006G034300 Sobic004G058600--Sobic006G034300 Sobic004G058600--Sobic003G427300 Sobic009G161900 Sobic009G161900 Sobic004G058600--Sobic009G161900 Sobic001G460100 Sobic001G460100 Sobic004G058600--Sobic001G460100 Sobic003G223900 Sobic003G223900 Sobic004G234300--Sobic003G223900 Sobic004G234300--Sobic010G222900 Sobic010G150200 Sobic010G150200 Sobic004G234300--Sobic010G150200 Sobic004G040800 Sobic004G040800 Sobic004G234300--Sobic004G040800 Sobic004G234300--Sobic001G493500 Sobic002G239900 Sobic002G239900 Sobic004G234300--Sobic002G239900 Sobic010G011900 Sobic010G011900 Sobic004G234300--Sobic010G011900 Sobic009G201500 Sobic009G201500 Sobic004G234300--Sobic009G201500 Sobic004G234300--Sobic010G077300 Sobic001G493500--Sobic010G011900 Sobic001G493500--Sobic004G234300 Sobic001G493500--Sobic010G077300 Sobic001G493500--Sobic010G170000 Sobic001G493500--Sobic003G224600 Sobic001G286000 Sobic001G286000 Sobic001G493500--Sobic001G286000 Sobic001G493500--Sobic009G201500 Sobic001G493500--Sobic004G066500 Sobic007G045900 Sobic007G045900 Sobic001G493500--Sobic007G045900 Sobic006G013300 Sobic006G013300 Sobic001G508200--Sobic006G013300 Sobic001G508200--Sobic004G347500 Sobic009G208600 Sobic009G208600 Sobic001G508200--Sobic009G208600 Sobic001G508200--Sobic005G021000 Sobic001G508200--Sobic006G208000 Sobic001G508200--Sobic002G266300 Sobic001G508200--Sobic010G024600 Sobic001G508200--Sobic003G098300 Sobic001G508200--Sobic003G427300
Octagon: transcription factors


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