Gene annotation
Transcriptome id Sobic.001G493500.1
Synonym ATSDI1, Sb01g046120
Functional annotation tetratricopeptide repeat domain containing protein, expressed
UniProt C5WWV3
Pfam PF00515
Panther DB PTHR36326 PTHR36326:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G48850 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os03g06970.1 : tetratricopeptide repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a000814 , Zm00025a053466
Brachypodium KQK23466
Barley HORVU4Hr1G074400.1 , HORVU4Hr1G074400.3 , HORVU4Hr1G074400.2 , HORVU4Hr1G074400.4
Wheat TraesCS4D02G280400 , TraesCS4B02G281800 , TraesCS4A02G021700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G493500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G011900 expressed protein -
2 Sobic.004G234300 DUF581 domain containing protein, expressed -
3 Sobic.010G077300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@uncharacterized mscS family protein, putative, expressed -
4 Sobic.010G170000 Triacylglycerol biosynthesis defect 1(PubMedID : 26320239)@O-acyltransferase, putative, expressed K11155: diacylglycerol O-acyltransferase 1
5 Sobic.003G224600 CPuORF17 - conserved peptide uORF-containing transcript, expressed -
6 Sobic.001G286000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
7 Sobic.009G201500 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@HSP101 Heat shock protein 101("PubMedID : 26759170,PubMedID : 24597475")@heat shock protein 101, putative, expressed K03695: ATP-dependent Clp protease ATP-binding subunit ClpB
8 Sobic.004G066500 chaperone protein clpB 1, putative, expressed K03695: ATP-dependent Clp protease ATP-binding subunit ClpB
9 Sobic.007G045900 integral membrane protein DUF6 domain containing protein, expressed -
10 Sobic.007G221000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed K16285: RING/U-box domain-containing protein
11 Sobic.004G155200 expressed protein -
12 Sobic.008G088839 - -
13 Sobic.004G203500 actin, putative, expressed K18584: ACTR3, actin-related protein 3
14 Sobic.010G222900 expressed protein -
15 Sobic.007G051600 - -
16 Sobic.004G058600 aldehyde dehydrogenase, putative, expressed K17761: succinate-semialdehyde dehydrogenase, mitochondrial
17 Sobic.009G161900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@NDP1, putative, expressed -
18 Sobic.001G312600 MLO domain containing protein, putative, expressed K08472: mlo protein
19 Sobic.003G362300 expressed protein -
20 Sobic.003G427300 uridine 5-monophosphate synthase, putative, expressed K13421: uridine monophosphate synthetase


Gene co-expression network
sample Sobic001G493500 Sobic001G493500 Sobic010G011900 Sobic010G011900 Sobic001G493500--Sobic010G011900 Sobic004G234300 Sobic004G234300 Sobic001G493500--Sobic004G234300 Sobic010G077300 Sobic010G077300 Sobic001G493500--Sobic010G077300 Sobic010G170000 Sobic010G170000 Sobic001G493500--Sobic010G170000 Sobic003G224600 Sobic003G224600 Sobic001G493500--Sobic003G224600 Sobic001G286000 Sobic001G286000 Sobic001G493500--Sobic001G286000 Sobic009G201500 Sobic009G201500 Sobic001G493500--Sobic009G201500 Sobic004G066500 Sobic004G066500 Sobic001G493500--Sobic004G066500 Sobic007G045900 Sobic007G045900 Sobic001G493500--Sobic007G045900 Sobic001G155300 Sobic001G155300 Sobic010G011900--Sobic001G155300 Sobic001G424400 Sobic001G424400 Sobic010G011900--Sobic001G424400 Sobic010G011900--Sobic001G493500 Sobic010G011900--Sobic007G045900 Sobic010G011900--Sobic004G234300 Sobic008G088839 Sobic008G088839 Sobic010G011900--Sobic008G088839 Sobic010G011900--Sobic004G066500 Sobic009G161900 Sobic009G161900 Sobic010G011900--Sobic009G161900 Sobic004G058600 Sobic004G058600 Sobic010G011900--Sobic004G058600 Sobic003G223900 Sobic003G223900 Sobic004G234300--Sobic003G223900 Sobic010G222900 Sobic010G222900 Sobic004G234300--Sobic010G222900 Sobic010G150200 Sobic010G150200 Sobic004G234300--Sobic010G150200 Sobic004G040800 Sobic004G040800 Sobic004G234300--Sobic004G040800 Sobic004G234300--Sobic001G493500 Sobic002G239900 Sobic002G239900 Sobic004G234300--Sobic002G239900 Sobic004G234300--Sobic010G011900 Sobic004G234300--Sobic009G201500 Sobic004G234300--Sobic010G077300 Sobic003G427300 Sobic003G427300 Sobic010G077300--Sobic003G427300 Sobic003G075400 Sobic003G075400 Sobic010G077300--Sobic003G075400 Sobic010G077300--Sobic010G170000 Sobic003G098300 Sobic003G098300 Sobic010G077300--Sobic003G098300 Sobic010G077300--Sobic004G066500 Sobic010G077300--Sobic004G058600 Sobic010G077300--Sobic004G234300 Sobic010G077300--Sobic001G493500 Sobic001G508200 Sobic001G508200 Sobic010G077300--Sobic001G508200 Sobic010G170000--Sobic003G427300 Sobic010G170000--Sobic004G066500 Sobic007G053100 Sobic007G053100 Sobic010G170000--Sobic007G053100 Sobic010G170000--Sobic010G077300 Sobic006G251500 Sobic006G251500 Sobic010G170000--Sobic006G251500 Sobic010G170000--Sobic003G224600 Sobic008G191850 Sobic008G191850 Sobic010G170000--Sobic008G191850 Sobic005G045700 Sobic005G045700 Sobic010G170000--Sobic005G045700 Sobic002G266300 Sobic002G266300 Sobic010G170000--Sobic002G266300 Sobic003G224600--Sobic010G170000 Sobic003G224600--Sobic007G053100 Sobic003G404000 Sobic003G404000 Sobic003G224600--Sobic003G404000 Sobic003G224600--Sobic008G191850 Sobic004G033200 Sobic004G033200 Sobic003G224600--Sobic004G033200 Sobic003G224600--Sobic004G066500 Sobic003G224600--Sobic005G045700 Sobic003G418200 Sobic003G418200 Sobic003G224600--Sobic003G418200 Sobic003G224600--Sobic001G493500 Sobic009G000700 Sobic009G000700 Sobic001G286000--Sobic009G000700 Sobic004G310600 Sobic004G310600 Sobic001G286000--Sobic004G310600 Sobic004G155150 Sobic004G155150 Sobic001G286000--Sobic004G155150 Sobic007G051600 Sobic007G051600 Sobic001G286000--Sobic007G051600 Sobic001G286000--Sobic009G201500 Sobic006G267900 Sobic006G267900 Sobic001G286000--Sobic006G267900 Sobic001G125100 Sobic001G125100 Sobic001G286000--Sobic001G125100 Sobic003G078501 Sobic003G078501 Sobic001G286000--Sobic003G078501 Sobic010G220400 Sobic010G220400 Sobic001G286000--Sobic010G220400 Sobic006G005600 Sobic006G005600 Sobic009G201500--Sobic006G005600 Sobic001G092600 Sobic001G092600 Sobic009G201500--Sobic001G092600 Sobic006G055600 Sobic006G055600 Sobic009G201500--Sobic006G055600 Sobic004G283201 Sobic004G283201 Sobic009G201500--Sobic004G283201 Sobic009G201500--Sobic001G286000 Sobic003G373150 Sobic003G373150 Sobic009G201500--Sobic003G373150 Sobic004G321000 Sobic004G321000 Sobic009G201500--Sobic004G321000 Sobic003G233900 Sobic003G233900 Sobic009G201500--Sobic003G233900 Sobic004G283300 Sobic004G283300 Sobic009G201500--Sobic004G283300 Sobic004G066500--Sobic008G191850 Sobic004G066500--Sobic007G053100 Sobic004G066500--Sobic004G033200 Sobic004G066500--Sobic003G427300 Sobic010G024600 Sobic010G024600 Sobic004G066500--Sobic010G024600 Sobic004G066500--Sobic003G098300 Sobic004G066500--Sobic002G266300 Sobic001G044300 Sobic001G044300 Sobic004G066500--Sobic001G044300 Sobic004G066500--Sobic001G508200 Sobic007G045900--Sobic004G066500 Sobic003G399500 Sobic003G399500 Sobic007G045900--Sobic003G399500 Sobic004G281700 Sobic004G281700 Sobic007G045900--Sobic004G281700 Sobic001G418500 Sobic001G418500 Sobic007G045900--Sobic001G418500 Sobic003G236200 Sobic003G236200 Sobic007G045900--Sobic003G236200 Sobic010G142900 Sobic010G142900 Sobic007G045900--Sobic010G142900 Sobic003G295600 Sobic003G295600 Sobic007G045900--Sobic003G295600 Sobic004G301800 Sobic004G301800 Sobic007G045900--Sobic004G301800 Sobic007G168100 Sobic007G168100 Sobic007G045900--Sobic007G168100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.