Gene annotation
| Transcriptome id | Sobic.004G155200.1 |
|---|---|
| Synonym | Sb04g020640 |
| Functional annotation | expressed protein |
| UniProt | C5XSL7 |
| Pfam | PF11820 |
| Panther DB | PTHR33128 PTHR33128:SF4 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT3G48660 : Protein of unknown function (DUF 3339) |
|---|---|
| RAP-DB (Rice) | LOC_Os02g30470.1 : expressed protein |
| MaizeGDB (Corn) | Zm00025a011769 |
| Brachypodium | KQJ82274 , PNT68674 |
| Barley | HORVU4Hr1G073500.1 , HORVU4Hr1G073500.2 |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.004G155200 |
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G502700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@nodulin, putative, expressed | - |
| 2 | Sobic.001G286000 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein | - |
| 3 | Sobic.002G225300 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@CPuORF39 - conserved peptide uORF-containing transcript, expressed | K09419: heat shock transcription factor, other eukaryote |
| 4 | Sobic.002G185300 | transporter, putative, expressed | - |
| 5 | Sobic.008G092400 | - | - |
| 6 | Sobic.001G037150 | - | - |
| 7 | Sobic.004G155150 | - | - |
| 8 | Sobic.001G005700 | acyl carrier protein, putative, expressed | - |
| 9 | Sobic.006G267900 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed | - |
| 10 | Sobic.003G225900 | expressed protein | - |
| 11 | Sobic.001G379000 | aminotransferase, putative, expressed | K00827: alanine-glyoxylate transaminase / (R)-3-amino-2-methylpropionate-pyruvate transaminase |
| 12 | Sobic.009G201500 | expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@HSP101 Heat shock protein 101("PubMedID : 26759170,PubMedID : 24597475")@heat shock protein 101, putative, expressed | K03695: ATP-dependent Clp protease ATP-binding subunit ClpB |
| 13 | Sobic.003G129400 | glycosyltransferase family 43 protein, putative, expressed | K00735: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 |
| 14 | Sobic.009G000700 | Sorghum CYP722B is not involved in the production of 5-deoxystrigol or orobanchol(PubMedID : 34525227)@cytochrome P450, putative, expressed | - |
| 15 | Sobic.006G005600 | Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@heat shock protein, putative, expressed | K04079: HSP90A, molecular chaperone HtpG |
| 16 | Sobic.009G156600 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@transmembrane amino acid transporter protein, putative, expressed | K13946: AUX1, auxin influx carrier (AUX1 LAX family) |
| 17 | Sobic.010G071700 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | K09286: EREBP-like factor |
| 18 | Sobic.003G367350 | - | - |
| 19 | Sobic.001G112000 | 3,4-dihydroxy-2-butanone kinase, putative, expressed | K00863: DAK, triose/dihydroxyacetone kinase / FAD-AMP lyase (cyclizing) |
| 20 | Sobic.010G260300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
Gene co-expression network
Octagon: transcription factors
© 2015- RIKEN, All rights reserved.
