Gene annotation
Transcriptome id Sobic.007G221000.1
Synonym XERICO, Sb07g028710
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5YJC4
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF184
NCBI CDD -
KEGG Orthology K16285; RING/U-box domain-containing protein
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT2G04240 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os09g30160.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a004975 , Zm00025a014158 , Zm00025a047385
Brachypodium KQJ90655
Barley HORVU5Hr1G071280.1
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.007G221000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G014800 "domain confirmed by Pfam database, expressed in leaf, flower, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@ABC transporter, ATP-binding protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
2 Sobic.005G134700 chalcone and stilbene synthases, putative, expressed -
3 Sobic.002G405700 expressed protein -
4 Sobic.001G044300 transcription factor, putative, expressed K09060: plant G-box-binding factor
5 Sobic.006G053200 - -
6 Sobic.003G427300 uridine 5-monophosphate synthase, putative, expressed K13421: uridine monophosphate synthetase
7 Sobic.001G125400 ethylene-insensitive protein, putative, expressed -
8 Sobic.007G053100 amino acid permease family protein, putative, expressed -
9 Sobic.010G179300 - -
10 Sobic.001G122600 expressed protein -
11 Sobic.001G122600 expressed protein -
12 Sobic.001G122600 expressed protein -
13 Sobic.001G122600 expressed protein -
14 Sobic.001G122600 expressed protein -
15 Sobic.001G122600 expressed protein -
16 Sobic.001G122600 expressed protein -
17 Sobic.001G122600 expressed protein -
18 Sobic.001G122600 expressed protein -
19 Sobic.001G122600 expressed protein -
20 Sobic.001G122600 expressed protein -


Gene co-expression network
sample Sobic007G221000 Sobic007G221000 Sobic006G014800 Sobic006G014800 Sobic007G221000--Sobic006G014800 Sobic005G134700 Sobic005G134700 Sobic007G221000--Sobic005G134700 Sobic002G405700 Sobic002G405700 Sobic007G221000--Sobic002G405700 Sobic001G044300 Sobic001G044300 Sobic007G221000--Sobic001G044300 Sobic006G053200 Sobic006G053200 Sobic007G221000--Sobic006G053200 Sobic003G427300 Sobic003G427300 Sobic007G221000--Sobic003G427300 Sobic001G125400 Sobic001G125400 Sobic007G221000--Sobic001G125400 Sobic007G053100 Sobic007G053100 Sobic007G221000--Sobic007G053100 Sobic010G179300 Sobic010G179300 Sobic007G221000--Sobic010G179300 Sobic006G014800--Sobic005G134700 Sobic006G014800--Sobic002G405700 Sobic001G122600 Sobic001G122600 Sobic006G014800--Sobic001G122600 Sobic005G134700--Sobic002G405700 Sobic005G134700--Sobic001G122600 Sobic002G405700--Sobic005G134700 Sobic002G405700--Sobic001G122600 Sobic009G037100 Sobic009G037100 Sobic001G044300--Sobic009G037100 Sobic009G025500 Sobic009G025500 Sobic001G044300--Sobic009G025500 Sobic005G165700 Sobic005G165700 Sobic001G044300--Sobic005G165700 Sobic004G164800 Sobic004G164800 Sobic001G044300--Sobic004G164800 Sobic010G198900 Sobic010G198900 Sobic001G044300--Sobic010G198900 Sobic003G372600 Sobic003G372600 Sobic001G044300--Sobic003G372600 Sobic003G144500 Sobic003G144500 Sobic001G044300--Sobic003G144500 Sobic001G498900 Sobic001G498900 Sobic001G044300--Sobic001G498900 Sobic010G125000 Sobic010G125000 Sobic001G044300--Sobic010G125000 Sobic006G053200--Sobic004G164800 Sobic001G208500 Sobic001G208500 Sobic006G053200--Sobic001G208500 Sobic002G393100 Sobic002G393100 Sobic006G053200--Sobic002G393100 Sobic008G159000 Sobic008G159000 Sobic006G053200--Sobic008G159000 Sobic002G197700 Sobic002G197700 Sobic006G053200--Sobic002G197700 Sobic006G053200--Sobic009G037100 Sobic002G211300 Sobic002G211300 Sobic006G053200--Sobic002G211300 Sobic006G053200--Sobic003G372600 Sobic006G055900 Sobic006G055900 Sobic006G053200--Sobic006G055900 Sobic006G208000 Sobic006G208000 Sobic003G427300--Sobic006G208000 Sobic001G508200 Sobic001G508200 Sobic003G427300--Sobic001G508200 Sobic002G266300 Sobic002G266300 Sobic003G427300--Sobic002G266300 Sobic003G427300--Sobic009G025500 Sobic003G427300--Sobic001G044300 Sobic003G427300--Sobic002G405700 Sobic003G427300--Sobic005G134700 Sobic003G098300 Sobic003G098300 Sobic003G427300--Sobic003G098300 Sobic003G427300--Sobic010G198900 Sobic001G125400--Sobic001G122600 Sobic007G053100--Sobic002G266300 Sobic006G251500 Sobic006G251500 Sobic007G053100--Sobic006G251500 Sobic007G053100--Sobic006G053200 Sobic007G053100--Sobic001G125400 Sobic005G045700 Sobic005G045700 Sobic007G053100--Sobic005G045700 Sobic004G033200 Sobic004G033200 Sobic007G053100--Sobic004G033200 Sobic007G053100--Sobic003G427300 Sobic004G066500 Sobic004G066500 Sobic007G053100--Sobic004G066500 Sobic002G127900 Sobic002G127900 Sobic007G053100--Sobic002G127900 Sobic005G147600 Sobic005G147600 Sobic010G179300--Sobic005G147600 Sobic010G179300--Sobic001G125400 Sobic001G165600 Sobic001G165600 Sobic010G179300--Sobic001G165600 Sobic006G234433 Sobic006G234433 Sobic010G179300--Sobic006G234433 Sobic010G179300--Sobic001G122600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.