Gene annotation
Transcriptome id Sobic.004G146300.1,Sobic.004G146300.3,Sobic.004G146300.2
Synonym
Functional annotation AP003256-AK101847 - NBS/LRR genes that are S-rich,divergent TIR, divergent NBS, expressed
UniProt A0A194YPT9
Pfam PF01582 PF00931
Panther DB PTHR32472 PTHR32472:SF11
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0007165; signal transduction GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT4G23440 : Disease resistance protein (TIR-NBS class)
RAP-DB (Rice) LOC_Os01g55530.1 : AP003256-AK101847 - NBS/LRR genes that are S-rich,divergent TIR, divergent NBS, expressed
MaizeGDB (Corn) Zm00025a034243
Brachypodium KQK09864 , KQK09865 , KQK09863
Barley -
Wheat TraesCS3D02G298000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G073400 galactosyltransferase family protein, putative, expressed -
2 Sobic.010G250800 DNA binding protein, putative, expressed -
3 Sobic.009G001200 zinc finger, C3HC4 type domain containing protein, expressed K10638: UHRF1, E3 ubiquitin-protein ligase UHRF1
4 Sobic.010G252700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cullin family domain containing protein, putative, expressed K03349: anaphase-promoting complex subunit 2
5 Sobic.001G122100 protein kinase family protein, putative, expressed K08866: TTK, serine/threonine-protein kinase TTK/MPS1
6 Sobic.001G442700 cyclin-J18-like, putative, expressed -
7 Sobic.003G345200 protein kinase family protein, putative, expressed -
8 Sobic.009G013000 rp3 protein, putative, expressed -
9 Sobic.009G167100 TBC domain containing protein, expressed -
10 Sobic.009G052100 tubulin/FtsZ domain containing protein, putative, expressed K10389: tubulin gamma
11 Sobic.004G119700 WD repeat-containing protein, putative, expressed K03363: cell division cycle 20, cofactor of APC complex
12 Sobic.008G013300 expressed protein -
13 Sobic.006G071628 - -
14 Sobic.009G061000 DNA binding protein, putative, expressed -
15 Sobic.004G287100 tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
16 Sobic.001G235700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@translin, putative, expressed -
17 Sobic.007G219200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
18 Sobic.001G051300 BEE 1, putative, expressed -
19 Sobic.006G173200 beige/BEACH domain containing protein, expressed -
20 Sobic.003G369200 POLA1 - Putative DNA polymerase alpha catalytic subunit, expressed K02320: DNA polymerase alpha subunit A


Gene co-expression network
sample Sobic004G146300 Sobic004G146300 Sobic009G073400 Sobic009G073400 Sobic004G146300--Sobic009G073400 Sobic010G250800 Sobic010G250800 Sobic004G146300--Sobic010G250800 Sobic009G001200 Sobic009G001200 Sobic004G146300--Sobic009G001200 Sobic010G252700 Sobic010G252700 Sobic004G146300--Sobic010G252700 Sobic001G122100 Sobic001G122100 Sobic004G146300--Sobic001G122100 Sobic001G442700 Sobic001G442700 Sobic004G146300--Sobic001G442700 Sobic003G345200 Sobic003G345200 Sobic004G146300--Sobic003G345200 Sobic009G013000 Sobic009G013000 Sobic004G146300--Sobic009G013000 Sobic009G167100 Sobic009G167100 Sobic004G146300--Sobic009G167100 Sobic009G061000 Sobic009G061000 Sobic009G073400--Sobic009G061000 Sobic009G073400--Sobic003G345200 Sobic003G017500 Sobic003G017500 Sobic009G073400--Sobic003G017500 Sobic006G173200 Sobic006G173200 Sobic009G073400--Sobic006G173200 Sobic001G159800 Sobic001G159800 Sobic009G073400--Sobic001G159800 Sobic006G172200 Sobic006G172200 Sobic009G073400--Sobic006G172200 Sobic009G073400--Sobic004G146300 Sobic009G206500 Sobic009G206500 Sobic009G073400--Sobic009G206500 Sobic010G090500 Sobic010G090500 Sobic009G073400--Sobic010G090500 Sobic009G052100 Sobic009G052100 Sobic010G250800--Sobic009G052100 Sobic007G006800 Sobic007G006800 Sobic010G250800--Sobic007G006800 Sobic006G071628 Sobic006G071628 Sobic010G250800--Sobic006G071628 Sobic001G408300 Sobic001G408300 Sobic010G250800--Sobic001G408300 Sobic001G385400 Sobic001G385400 Sobic010G250800--Sobic001G385400 Sobic010G250800--Sobic009G167100 Sobic005G088900 Sobic005G088900 Sobic010G250800--Sobic005G088900 Sobic009G049200 Sobic009G049200 Sobic010G250800--Sobic009G049200 Sobic004G038100 Sobic004G038100 Sobic010G250800--Sobic004G038100 Sobic003G410600 Sobic003G410600 Sobic009G001200--Sobic003G410600 Sobic009G001200--Sobic003G345200 Sobic001G108400 Sobic001G108400 Sobic009G001200--Sobic001G108400 Sobic004G119700 Sobic004G119700 Sobic009G001200--Sobic004G119700 Sobic002G161700 Sobic002G161700 Sobic009G001200--Sobic002G161700 Sobic010G003100 Sobic010G003100 Sobic009G001200--Sobic010G003100 Sobic004G197400 Sobic004G197400 Sobic009G001200--Sobic004G197400 Sobic009G001200--Sobic001G122100 Sobic001G051300 Sobic001G051300 Sobic009G001200--Sobic001G051300 Sobic008G179000 Sobic008G179000 Sobic010G252700--Sobic008G179000 Sobic007G123100 Sobic007G123100 Sobic010G252700--Sobic007G123100 Sobic010G252700--Sobic009G052100 Sobic002G362200 Sobic002G362200 Sobic010G252700--Sobic002G362200 Sobic001G149100 Sobic001G149100 Sobic010G252700--Sobic001G149100 Sobic008G031200 Sobic008G031200 Sobic010G252700--Sobic008G031200 Sobic008G090000 Sobic008G090000 Sobic010G252700--Sobic008G090000 Sobic010G252700--Sobic006G071628 Sobic010G252700--Sobic010G250800 Sobic002G303800 Sobic002G303800 Sobic001G122100--Sobic002G303800 Sobic009G087300 Sobic009G087300 Sobic001G122100--Sobic009G087300 Sobic006G281400 Sobic006G281400 Sobic001G122100--Sobic006G281400 Sobic003G369200 Sobic003G369200 Sobic001G122100--Sobic003G369200 Sobic002G021200 Sobic002G021200 Sobic001G122100--Sobic002G021200 Sobic003G444300 Sobic003G444300 Sobic001G122100--Sobic003G444300 Sobic001G122100--Sobic009G052100 Sobic010G105400 Sobic010G105400 Sobic001G122100--Sobic010G105400 Sobic001G122100--Sobic010G252700 Sobic003G222200 Sobic003G222200 Sobic001G442700--Sobic003G222200 Sobic001G442700--Sobic004G146300 Sobic001G442700--Sobic009G073400 Sobic001G150033 Sobic001G150033 Sobic001G442700--Sobic001G150033 Sobic001G442700--Sobic003G345200 Sobic010G168900 Sobic010G168900 Sobic001G442700--Sobic010G168900 Sobic001G442700--Sobic006G172200 Sobic006G140100 Sobic006G140100 Sobic001G442700--Sobic006G140100 Sobic001G442700--Sobic004G119700 Sobic003G345200--Sobic009G073400 Sobic009G151700 Sobic009G151700 Sobic003G345200--Sobic009G151700 Sobic010G054600 Sobic010G054600 Sobic003G345200--Sobic010G054600 Sobic003G345200--Sobic006G172200 Sobic003G345200--Sobic009G001200 Sobic003G345200--Sobic004G119700 Sobic003G345200--Sobic009G206500 Sobic010G067800 Sobic010G067800 Sobic003G345200--Sobic010G067800 Sobic003G345200--Sobic006G140100 Sobic009G013000--Sobic004G146300 Sobic004G206300 Sobic004G206300 Sobic009G013000--Sobic004G206300 Sobic009G013100 Sobic009G013100 Sobic009G013000--Sobic009G013100 Sobic008G007000 Sobic008G007000 Sobic009G013000--Sobic008G007000 Sobic003G027800 Sobic003G027800 Sobic009G013000--Sobic003G027800 Sobic009G031500 Sobic009G031500 Sobic009G013000--Sobic009G031500 Sobic001G463800 Sobic001G463800 Sobic009G013000--Sobic001G463800 Sobic002G370400 Sobic002G370400 Sobic009G013000--Sobic002G370400 Sobic009G013000--Sobic010G250800 Sobic009G167100--Sobic010G250800 Sobic009G167100--Sobic009G061000 Sobic006G257200 Sobic006G257200 Sobic009G167100--Sobic006G257200 Sobic009G167100--Sobic001G385400 Sobic008G015200 Sobic008G015200 Sobic009G167100--Sobic008G015200 Sobic002G320600 Sobic002G320600 Sobic009G167100--Sobic002G320600 Sobic009G167100--Sobic003G027800 Sobic009G167100--Sobic009G052100 Sobic008G192700 Sobic008G192700 Sobic009G167100--Sobic008G192700
Octagon: transcription factors


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