Gene annotation
Transcriptome id Sobic.009G001200.1
Synonym VIM1, ORTH2, Sb09g000320
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5YXY0
Pfam PF13920 PF00097 PF02182
Panther DB PTHR14140
NCBI CDD -
KEGG Orthology K10638; UHRF1, E3 ubiquitin-protein ligase UHRF1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G57820 : Zinc finger (C3HC4-type RING finger) family protein
RAP-DB (Rice) LOC_Os05g01230.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a038298 , Zm00025a041015
Brachypodium KQK08155 , KQJ91549
Barley HORVU1Hr1G000520.1 , HORVU1Hr1G000520.2 , HORVU1Hr1G000520.3 , HORVU1Hr1G000520.4 , HORVU1Hr1G000520.5 , HORVU1Hr1G000520.6 , HORVU1Hr1G000520.7 , HORVU1Hr1G000520.8 , HORVU7Hr1G047680.1 , HORVU3Hr1G076250.1
Wheat TraesCS1B02G007900 , TraesCS1D02G002400 , TraesCS1A02G005700 , TraesCS1D02G002400 , TraesCS1D02G002400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G410600 exostosin family domain containing protein, expressed -
2 Sobic.003G345200 protein kinase family protein, putative, expressed -
3 Sobic.001G108400 LRR receptor-like protein kinase, putative, expressed -
4 Sobic.004G119700 WD repeat-containing protein, putative, expressed K03363: cell division cycle 20, cofactor of APC complex
5 Sobic.002G161700 Myb-like DNA-binding domain containing protein, putative, expressed -
6 Sobic.010G003100 monocopper oxidase, putative, expressed -
7 Sobic.004G197400 expressed protein K00558: DNMT1, DNA (cytosine-5)-methyltransferase 1
8 Sobic.001G122100 protein kinase family protein, putative, expressed K08866: TTK, serine/threonine-protein kinase TTK/MPS1
9 Sobic.001G051300 BEE 1, putative, expressed -
10 Sobic.003G013000 inactive receptor kinase At2g26730 precursor, putative, expressed -
11 Sobic.004G146300 AP003256-AK101847 - NBS/LRR genes that are S-rich,divergent TIR, divergent NBS, expressed -
12 Sobic.009G073400 galactosyltransferase family protein, putative, expressed -
13 Sobic.003G017500 TTL1, putative, expressed -
14 Sobic.001G142000 deoxyuridine 5-triphosphate nucleotidohydrolase, putative, expressed K01520: dut, dUTP pyrophosphatase
15 Sobic.004G257600 zinc finger family protein, putative, expressed K18932: palmitoyltransferase
16 Sobic.010G054600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribonucleoside-diphosphate reductase large subunit, putative, expressed K10807: ribonucleoside-diphosphate reductase subunit M1
17 Sobic.010G001800 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
18 Sobic.007G166800 domain of unknown function DUF966 domain containing protein, expressed -
19 Sobic.005G144600 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
20 Sobic.007G139500 phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1


Gene co-expression network
sample Sobic009G001200 Sobic009G001200 Sobic003G410600 Sobic003G410600 Sobic009G001200--Sobic003G410600 Sobic003G345200 Sobic003G345200 Sobic009G001200--Sobic003G345200 Sobic001G108400 Sobic001G108400 Sobic009G001200--Sobic001G108400 Sobic004G119700 Sobic004G119700 Sobic009G001200--Sobic004G119700 Sobic002G161700 Sobic002G161700 Sobic009G001200--Sobic002G161700 Sobic010G003100 Sobic010G003100 Sobic009G001200--Sobic010G003100 Sobic004G197400 Sobic004G197400 Sobic009G001200--Sobic004G197400 Sobic001G122100 Sobic001G122100 Sobic009G001200--Sobic001G122100 Sobic001G051300 Sobic001G051300 Sobic009G001200--Sobic001G051300 Sobic003G294500 Sobic003G294500 Sobic003G410600--Sobic003G294500 Sobic003G013000 Sobic003G013000 Sobic003G410600--Sobic003G013000 Sobic005G144600 Sobic005G144600 Sobic003G410600--Sobic005G144600 Sobic001G177900 Sobic001G177900 Sobic003G410600--Sobic001G177900 Sobic003G135400 Sobic003G135400 Sobic003G410600--Sobic003G135400 Sobic003G314900 Sobic003G314900 Sobic003G410600--Sobic003G314900 Sobic007G168900 Sobic007G168900 Sobic003G410600--Sobic007G168900 Sobic010G008900 Sobic010G008900 Sobic003G410600--Sobic010G008900 Sobic001G029800 Sobic001G029800 Sobic003G410600--Sobic001G029800 Sobic009G073400 Sobic009G073400 Sobic003G345200--Sobic009G073400 Sobic009G151700 Sobic009G151700 Sobic003G345200--Sobic009G151700 Sobic010G054600 Sobic010G054600 Sobic003G345200--Sobic010G054600 Sobic006G172200 Sobic006G172200 Sobic003G345200--Sobic006G172200 Sobic003G345200--Sobic009G001200 Sobic003G345200--Sobic004G119700 Sobic009G206500 Sobic009G206500 Sobic003G345200--Sobic009G206500 Sobic010G067800 Sobic010G067800 Sobic003G345200--Sobic010G067800 Sobic006G140100 Sobic006G140100 Sobic003G345200--Sobic006G140100 Sobic007G044400 Sobic007G044400 Sobic001G108400--Sobic007G044400 Sobic001G108400--Sobic003G410600 Sobic002G313600 Sobic002G313600 Sobic001G108400--Sobic002G313600 Sobic001G108400--Sobic009G001200 Sobic001G404700 Sobic001G404700 Sobic001G108400--Sobic001G404700 Sobic006G207400 Sobic006G207400 Sobic001G108400--Sobic006G207400 Sobic003G017500 Sobic003G017500 Sobic001G108400--Sobic003G017500 Sobic001G169800 Sobic001G169800 Sobic001G108400--Sobic001G169800 Sobic001G026600 Sobic001G026600 Sobic001G108400--Sobic001G026600 Sobic004G270800 Sobic004G270800 Sobic004G119700--Sobic004G270800 Sobic004G119700--Sobic010G054600 Sobic001G142000 Sobic001G142000 Sobic004G119700--Sobic001G142000 Sobic003G369200 Sobic003G369200 Sobic004G119700--Sobic003G369200 Sobic008G129200 Sobic008G129200 Sobic004G119700--Sobic008G129200 Sobic010G147700 Sobic010G147700 Sobic004G119700--Sobic010G147700 Sobic004G331600 Sobic004G331600 Sobic004G119700--Sobic004G331600 Sobic005G110535 Sobic005G110535 Sobic004G119700--Sobic005G110535 Sobic009G087000 Sobic009G087000 Sobic004G119700--Sobic009G087000 Sobic002G393200 Sobic002G393200 Sobic002G161700--Sobic002G393200 Sobic002G161700--Sobic009G206500 Sobic004G308100 Sobic004G308100 Sobic002G161700--Sobic004G308100 Sobic007G166800 Sobic007G166800 Sobic002G161700--Sobic007G166800 Sobic002G161700--Sobic009G151700 Sobic009G061000 Sobic009G061000 Sobic002G161700--Sobic009G061000 Sobic002G161700--Sobic003G013000 Sobic002G319200 Sobic002G319200 Sobic002G161700--Sobic002G319200 Sobic006G254500 Sobic006G254500 Sobic002G161700--Sobic006G254500 Sobic004G257600 Sobic004G257600 Sobic010G003100--Sobic004G257600 Sobic007G100600 Sobic007G100600 Sobic010G003100--Sobic007G100600 Sobic010G003100--Sobic001G142000 Sobic002G255500 Sobic002G255500 Sobic010G003100--Sobic002G255500 Sobic010G003100--Sobic001G029800 Sobic002G191000 Sobic002G191000 Sobic010G003100--Sobic002G191000 Sobic010G003100--Sobic010G008900 Sobic010G003100--Sobic001G177900 Sobic001G070300 Sobic001G070300 Sobic010G003100--Sobic001G070300 Sobic004G197400--Sobic003G294500 Sobic004G197400--Sobic005G144600 Sobic001G456500 Sobic001G456500 Sobic004G197400--Sobic001G456500 Sobic006G116500 Sobic006G116500 Sobic004G197400--Sobic006G116500 Sobic010G274000 Sobic010G274000 Sobic004G197400--Sobic010G274000 Sobic004G197400--Sobic001G070300 Sobic001G078600 Sobic001G078600 Sobic004G197400--Sobic001G078600 Sobic004G355500 Sobic004G355500 Sobic004G197400--Sobic004G355500 Sobic004G197400--Sobic010G147700 Sobic002G303800 Sobic002G303800 Sobic001G122100--Sobic002G303800 Sobic009G087300 Sobic009G087300 Sobic001G122100--Sobic009G087300 Sobic006G281400 Sobic006G281400 Sobic001G122100--Sobic006G281400 Sobic001G122100--Sobic003G369200 Sobic002G021200 Sobic002G021200 Sobic001G122100--Sobic002G021200 Sobic003G444300 Sobic003G444300 Sobic001G122100--Sobic003G444300 Sobic009G052100 Sobic009G052100 Sobic001G122100--Sobic009G052100 Sobic010G105400 Sobic010G105400 Sobic001G122100--Sobic010G105400 Sobic010G252700 Sobic010G252700 Sobic001G122100--Sobic010G252700 Sobic003G289800 Sobic003G289800 Sobic001G051300--Sobic003G289800 Sobic002G383100 Sobic002G383100 Sobic001G051300--Sobic002G383100 Sobic007G139500 Sobic007G139500 Sobic001G051300--Sobic007G139500 Sobic001G051300--Sobic009G087000 Sobic006G071628 Sobic006G071628 Sobic001G051300--Sobic006G071628 Sobic003G179500 Sobic003G179500 Sobic001G051300--Sobic003G179500 Sobic001G051300--Sobic010G147700 Sobic001G051300--Sobic003G017500 Sobic003G201000 Sobic003G201000 Sobic001G051300--Sobic003G201000
Octagon: transcription factors


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