Gene annotation
Transcriptome id Sobic.006G206800.1
Synonym ACA8, AT-ACA8, Sb06g027770
Functional annotation "Ca ATPase, IIB type" (PubMedID : 22196357)
calcium-transporting ATPase, plasma membrane-type, putative, expressed
UniProt C5YFI8
Pfam PF00690 PF12515 PF12710 PF00689 PF00122
Panther DB PTHR24093 PTHR24093:SF359
NCBI CDD -
KEGG Orthology K01537; P-type Ca2+ transporter type 2C
Gene Ontology GO:0005516; calmodulin binding GO:0000166nucleotide binding


Orthologs (automatic annotation)
TAIR AT5G57110 : autoinhibited Ca2+ -ATPase, isoform 8
RAP-DB (Rice) LOC_Os04g51610.1 : calcium-transporting ATPase, plasma membrane-type, putative, expressed
MaizeGDB (Corn) Zm00025a056961 , Zm00025a014408 , Zm00025a009892
Brachypodium KQJ84441 , KQK17034 , PNT61800
Barley HORVU2Hr1G101040.34 , HORVU2Hr1G101040.35 , HORVU2Hr1G101040.36 , HORVU2Hr1G101040.37 , HORVU2Hr1G101040.30 , HORVU2Hr1G101040.31 , HORVU2Hr1G101040.32 , HORVU2Hr1G101040.33 , HORVU2Hr1G101040.38 , HORVU2Hr1G101040.39 , HORVU2Hr1G101040.21 , HORVU2Hr1G101040.22 , HORVU0Hr1G005400.2 , HORVU2Hr1G101040.12 , HORVU2Hr1G101040.13 , HORVU2Hr1G101040.18 , HORVU2Hr1G101040.19 , HORVU2Hr1G101040.16 , HORVU2Hr1G101040.17 , HORVU2Hr1G101040.14 , HORVU2Hr1G101040.15 , HORVU2Hr1G101040.10 , HORVU2Hr1G101040.11 , HORVU2Hr1G101040.27 , HORVU2Hr1G101040.26 , HORVU2Hr1G101040.25 , HORVU2Hr1G101040.24 , HORVU2Hr1G101040.23 , HORVU2Hr1G101040.20 , HORVU2Hr1G101040.29 , HORVU2Hr1G101040.28 , HORVU2Hr1G101040.8 , HORVU2Hr1G101040.9 , HORVU2Hr1G101040.4 , HORVU2Hr1G101040.5 , HORVU2Hr1G101040.6 , HORVU2Hr1G101040.7 , HORVU2Hr1G101040.1 , HORVU2Hr1G101040.2 , HORVU2Hr1G101040.3
Wheat TraesCS2D02G430700 , TraesCS2D02G430700 , TraesCS2B02G454000 , TraesCS2B02G454000 , TraesCS2A02G432700
Populus PNT30272 , PNT30271 , PNS94310 , PNT30273 , PNS94305 , PNS94307 , PNS94309 , PNS94308


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G076600 - -
2 Sobic.003G281800 membrane associated DUF588 domain containing protein, putative, expressed -
3 Sobic.009G161900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@NDP1, putative, expressed -
4 Sobic.001G333900 Diacylglycerol kinase 1 DGK1 (At)(PubMedID : 27208977)@diacylglycerol kinase 1, putative, expressed K00901: dgkA, diacylglycerol kinase (ATP)
5 Sobic.009G030200 homeobox protein knotted-1-like 6, putative, expressed -
6 Sobic.003G198200 "similar to Protein phosphatase 2C, expressed in 4 stresses, namely drought, salt, cold and heat"(PubMedID : 29862293)@Negative regulator of ABA(PubMedID : 30367619)@protein phosphatase 2C, putative, expressed K14497: protein phosphatase 2C
7 Sobic.004G353600 sucrose transporters(PubMedID : 23805151)@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@transporter, major facilitator family, putative, expressed K15378: solute carrier family 45, member 1/2/4
8 Sobic.003G144200 Homeobox domain containing protein, expressed -
9 Sobic.005G121200 "similar to HVA22-like protein e, putative, expressed"(PubMedID : 29862293)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6
10 Sobic.001G157400 Class III HD ZIP family protein(PubMedID : 23915383)@START domain containing protein, expressed K09338: homeobox-leucine zipper protein
11 Sobic.002G306000 calmodulin-binding transcription activator 5, putative, expressed -
12 Sobic.003G378000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@F-box/LRR-repeat protein 2, putative, expressed K03875: SKP2, F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
13 Sobic.001G050800 galactosyltransferase family protein, putative, expressed -
14 Sobic.006G272700 Up-reguralion under drought(PubMedID : 24916767)@expressed protein -
15 Sobic.002G239900 expressed protein K19307: 25S rRNA (uracil2634-N3)-methyltransferase
16 Sobic.009G076700 expressed protein -
17 Sobic.002G207100 - -
18 Sobic.001G155300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed K09840: 9-cis-epoxycarotenoid dioxygenase
19 Sobic.004G162200 heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed -
20 Sobic.001G424400 similar to Putative uncharacterized protein(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Negative regulator of ABA(PubMedID : 30367619)@protein phosphatase 2C, putative, expressed K14497: protein phosphatase 2C


Gene co-expression network
sample Sobic006G206800 Sobic006G206800 Sobic009G076600 Sobic009G076600 Sobic006G206800--Sobic009G076600 Sobic003G281800 Sobic003G281800 Sobic006G206800--Sobic003G281800 Sobic009G161900 Sobic009G161900 Sobic006G206800--Sobic009G161900 Sobic001G333900 Sobic001G333900 Sobic006G206800--Sobic001G333900 Sobic009G030200 Sobic009G030200 Sobic006G206800--Sobic009G030200 Sobic003G198200 Sobic003G198200 Sobic006G206800--Sobic003G198200 Sobic004G353600 Sobic004G353600 Sobic006G206800--Sobic004G353600 Sobic003G144200 Sobic003G144200 Sobic006G206800--Sobic003G144200 Sobic005G121200 Sobic005G121200 Sobic006G206800--Sobic005G121200 Sobic009G076700 Sobic009G076700 Sobic009G076600--Sobic009G076700 Sobic007G143200 Sobic007G143200 Sobic009G076600--Sobic007G143200 Sobic007G143100 Sobic007G143100 Sobic009G076600--Sobic007G143100 Sobic005G016900 Sobic005G016900 Sobic009G076600--Sobic005G016900 Sobic007G073750 Sobic007G073750 Sobic009G076600--Sobic007G073750 Sobic007G169600 Sobic007G169600 Sobic009G076600--Sobic007G169600 Sobic002G037400 Sobic002G037400 Sobic009G076600--Sobic002G037400 Sobic002G331450 Sobic002G331450 Sobic009G076600--Sobic002G331450 Sobic003G397400 Sobic003G397400 Sobic009G076600--Sobic003G397400 Sobic004G343800 Sobic004G343800 Sobic003G281800--Sobic004G343800 Sobic002G239900 Sobic002G239900 Sobic003G281800--Sobic002G239900 Sobic008G119400 Sobic008G119400 Sobic003G281800--Sobic008G119400 Sobic001G424400 Sobic001G424400 Sobic003G281800--Sobic001G424400 Sobic001G241600 Sobic001G241600 Sobic003G281800--Sobic001G241600 Sobic003G281800--Sobic006G206800 Sobic004G146300 Sobic004G146300 Sobic003G281800--Sobic004G146300 Sobic010G186500 Sobic010G186500 Sobic003G281800--Sobic010G186500 Sobic003G281800--Sobic009G161900 Sobic010G147600 Sobic010G147600 Sobic009G161900--Sobic010G147600 Sobic004G058600 Sobic004G058600 Sobic009G161900--Sobic004G058600 Sobic001G471000 Sobic001G471000 Sobic009G161900--Sobic001G471000 Sobic009G161900--Sobic001G333900 Sobic001G193500 Sobic001G193500 Sobic009G161900--Sobic001G193500 Sobic004G066500 Sobic004G066500 Sobic009G161900--Sobic004G066500 Sobic009G161900--Sobic001G424400 Sobic003G378000 Sobic003G378000 Sobic009G161900--Sobic003G378000 Sobic010G170000 Sobic010G170000 Sobic009G161900--Sobic010G170000 Sobic001G333900--Sobic009G161900 Sobic002G043500 Sobic002G043500 Sobic001G333900--Sobic002G043500 Sobic009G108700 Sobic009G108700 Sobic001G333900--Sobic009G108700 Sobic007G196900 Sobic007G196900 Sobic001G333900--Sobic007G196900 Sobic003G149800 Sobic003G149800 Sobic001G333900--Sobic003G149800 Sobic001G333900--Sobic003G198200 Sobic001G333900--Sobic006G206800 Sobic001G477700 Sobic001G477700 Sobic001G333900--Sobic001G477700 Sobic010G011900 Sobic010G011900 Sobic001G333900--Sobic010G011900 Sobic001G050800 Sobic001G050800 Sobic009G030200--Sobic001G050800 Sobic001G157400 Sobic001G157400 Sobic009G030200--Sobic001G157400 Sobic003G278700 Sobic003G278700 Sobic009G030200--Sobic003G278700 Sobic010G071700 Sobic010G071700 Sobic009G030200--Sobic010G071700 Sobic005G231700 Sobic005G231700 Sobic009G030200--Sobic005G231700 Sobic003G227600 Sobic003G227600 Sobic009G030200--Sobic003G227600 Sobic003G342600 Sobic003G342600 Sobic009G030200--Sobic003G342600 Sobic009G159900 Sobic009G159900 Sobic009G030200--Sobic009G159900 Sobic006G032200 Sobic006G032200 Sobic009G030200--Sobic006G032200 Sobic003G198150 Sobic003G198150 Sobic003G198200--Sobic003G198150 Sobic004G170032 Sobic004G170032 Sobic003G198200--Sobic004G170032 Sobic001G450800 Sobic001G450800 Sobic003G198200--Sobic001G450800 Sobic002G148700 Sobic002G148700 Sobic003G198200--Sobic002G148700 Sobic003G198200--Sobic003G227600 Sobic004G337900 Sobic004G337900 Sobic003G198200--Sobic004G337900 Sobic008G029300 Sobic008G029300 Sobic003G198200--Sobic008G029300 Sobic003G198200--Sobic004G353600 Sobic002G387200 Sobic002G387200 Sobic003G198200--Sobic002G387200 Sobic003G272400 Sobic003G272400 Sobic004G353600--Sobic003G272400 Sobic002G306000 Sobic002G306000 Sobic004G353600--Sobic002G306000 Sobic006G078300 Sobic006G078300 Sobic004G353600--Sobic006G078300 Sobic003G087100 Sobic003G087100 Sobic004G353600--Sobic003G087100 Sobic004G353600--Sobic003G378000 Sobic004G353600--Sobic001G157400 Sobic003G332000 Sobic003G332000 Sobic004G353600--Sobic003G332000 Sobic001G075800 Sobic001G075800 Sobic004G353600--Sobic001G075800 Sobic006G203000 Sobic006G203000 Sobic004G353600--Sobic006G203000 Sobic003G017200 Sobic003G017200 Sobic003G144200--Sobic003G017200 Sobic002G023900 Sobic002G023900 Sobic003G144200--Sobic002G023900 Sobic003G144200--Sobic001G157400 Sobic003G144200--Sobic009G159900 Sobic003G144200--Sobic001G050800 Sobic001G316900 Sobic001G316900 Sobic003G144200--Sobic001G316900 Sobic001G106000 Sobic001G106000 Sobic003G144200--Sobic001G106000 Sobic009G170100 Sobic009G170100 Sobic003G144200--Sobic009G170100 Sobic007G153001 Sobic007G153001 Sobic003G144200--Sobic007G153001 Sobic001G127800 Sobic001G127800 Sobic005G121200--Sobic001G127800 Sobic001G460300 Sobic001G460300 Sobic005G121200--Sobic001G460300 Sobic002G337800 Sobic002G337800 Sobic005G121200--Sobic002G337800 Sobic005G121200--Sobic003G278700 Sobic005G121200--Sobic009G030200 Sobic001G396400 Sobic001G396400 Sobic005G121200--Sobic001G396400 Sobic005G121200--Sobic003G198200 Sobic007G152800 Sobic007G152800 Sobic005G121200--Sobic007G152800 Sobic005G121200--Sobic003G198150
Octagon: transcription factors


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