Gene annotation
Transcriptome id Sobic.010G147600.1
Synonym RTNLB2, Sb10g019720, BTI2
Functional annotation reticulon domain containing protein, putative, expressed
UniProt C5Z372
Pfam PF02453
Panther DB PTHR10994 PTHR10994:SF73
NCBI CDD KOG1792; Reticulon
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G11220 : VIRB2-interacting protein 2
RAP-DB (Rice) LOC_Os06g30750.1 : reticulon domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a042828
Brachypodium KQK18262
Barley -
Wheat TraesCS7D02G337800 , TraesCS7A02G341800 , TraesCS7B02G241100 , TraesCS7B02G241100
Populus -


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cDNA sequences
Sobic.010G147600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G161900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@NDP1, putative, expressed -
2 Sobic.001G424400 similar to Putative uncharacterized protein(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Negative regulator of ABA(PubMedID : 30367619)@protein phosphatase 2C, putative, expressed K14497: protein phosphatase 2C
3 Sobic.002G043500 aldehyde oxidase, putative, expressed K09842: abscisic-aldehyde oxidase
4 Sobic.001G477700 WD domain, G-beta repeat domain containing protein, expressed K11807: WDTC1, WD and tetratricopeptide repeats protein 1
5 Sobic.009G108700 -(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
6 Sobic.002G072600 cytochrome b-c1 complex subunit 7, putative, expressed K00417: QCR7, ubiquinol-cytochrome c reductase subunit 7
7 Sobic.003G408300 WD domain, G-beta repeat domain containing protein, expressed K14791: periodic tryptophan protein 1
8 Sobic.001G179900 DCL2, putative, expressed K11592: DICER1, endoribonuclease Dicer
9 Sobic.001G118700 6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor, putative, expressed -
10 Sobic.002G189700 nucleobase-ascorbate transporter, putative, expressed -
11 Sobic.002G306000 calmodulin-binding transcription activator 5, putative, expressed -
12 Sobic.007G187900 OsFBX187 - F-box domain containing protein, expressed -
13 Sobic.001G471000 RNase L inhibitor protein-related, putative, expressed K09140: pre-rRNA-processing protein TSR3
14 Sobic.010G026300 hypersensitive-induced response protein, putative, expressed -
15 Sobic.007G196900 expressed protein -
16 Sobic.003G002700 WD domain, G-beta repeat domain containing protein, expressed K11806: DCAF13, DDB1- and CUL4-associated factor 13
17 Sobic.007G162800 expressed protein -
18 Sobic.001G333900 Diacylglycerol kinase 1 DGK1 (At)(PubMedID : 27208977)@diacylglycerol kinase 1, putative, expressed K00901: dgkA, diacylglycerol kinase (ATP)
19 Sobic.001G413800 expressed protein K13141: integrator complex subunit 4
20 Sobic.001G034500 SEC14 cytosolic factor family protein, putative, expressed -


Gene co-expression network
sample Sobic010G147600 Sobic010G147600 Sobic009G161900 Sobic009G161900 Sobic010G147600--Sobic009G161900 Sobic001G424400 Sobic001G424400 Sobic010G147600--Sobic001G424400 Sobic002G043500 Sobic002G043500 Sobic010G147600--Sobic002G043500 Sobic001G477700 Sobic001G477700 Sobic010G147600--Sobic001G477700 Sobic009G108700 Sobic009G108700 Sobic010G147600--Sobic009G108700 Sobic002G072600 Sobic002G072600 Sobic010G147600--Sobic002G072600 Sobic003G408300 Sobic003G408300 Sobic010G147600--Sobic003G408300 Sobic001G179900 Sobic001G179900 Sobic010G147600--Sobic001G179900 Sobic001G118700 Sobic001G118700 Sobic010G147600--Sobic001G118700 Sobic009G161900--Sobic010G147600 Sobic004G058600 Sobic004G058600 Sobic009G161900--Sobic004G058600 Sobic001G471000 Sobic001G471000 Sobic009G161900--Sobic001G471000 Sobic001G333900 Sobic001G333900 Sobic009G161900--Sobic001G333900 Sobic001G193500 Sobic001G193500 Sobic009G161900--Sobic001G193500 Sobic004G066500 Sobic004G066500 Sobic009G161900--Sobic004G066500 Sobic009G161900--Sobic001G424400 Sobic003G378000 Sobic003G378000 Sobic009G161900--Sobic003G378000 Sobic010G170000 Sobic010G170000 Sobic009G161900--Sobic010G170000 Sobic004G116300 Sobic004G116300 Sobic001G424400--Sobic004G116300 Sobic010G011900 Sobic010G011900 Sobic001G424400--Sobic010G011900 Sobic001G424400--Sobic009G161900 Sobic001G424400--Sobic010G147600 Sobic003G281800 Sobic003G281800 Sobic001G424400--Sobic003G281800 Sobic001G155300 Sobic001G155300 Sobic001G424400--Sobic001G155300 Sobic001G424400--Sobic003G378000 Sobic001G241600 Sobic001G241600 Sobic001G424400--Sobic001G241600 Sobic003G354000 Sobic003G354000 Sobic001G424400--Sobic003G354000 Sobic002G110300 Sobic002G110300 Sobic002G043500--Sobic002G110300 Sobic001G083800 Sobic001G083800 Sobic002G043500--Sobic001G083800 Sobic002G043500--Sobic001G179900 Sobic010G033700 Sobic010G033700 Sobic002G043500--Sobic010G033700 Sobic002G189700 Sobic002G189700 Sobic002G043500--Sobic002G189700 Sobic002G043500--Sobic001G333900 Sobic002G009900 Sobic002G009900 Sobic002G043500--Sobic002G009900 Sobic007G196900 Sobic007G196900 Sobic002G043500--Sobic007G196900 Sobic004G305200 Sobic004G305200 Sobic002G043500--Sobic004G305200 Sobic006G131000 Sobic006G131000 Sobic001G477700--Sobic006G131000 Sobic001G096000 Sobic001G096000 Sobic001G477700--Sobic001G096000 Sobic007G042900 Sobic007G042900 Sobic001G477700--Sobic007G042900 Sobic001G034500 Sobic001G034500 Sobic001G477700--Sobic001G034500 Sobic001G477700--Sobic007G196900 Sobic007G180600 Sobic007G180600 Sobic001G477700--Sobic007G180600 Sobic001G413800 Sobic001G413800 Sobic001G477700--Sobic001G413800 Sobic003G284000 Sobic003G284000 Sobic001G477700--Sobic003G284000 Sobic010G204400 Sobic010G204400 Sobic001G477700--Sobic010G204400 Sobic009G066900 Sobic009G066900 Sobic009G108700--Sobic009G066900 Sobic001G154500 Sobic001G154500 Sobic009G108700--Sobic001G154500 Sobic004G226600 Sobic004G226600 Sobic009G108700--Sobic004G226600 Sobic003G033700 Sobic003G033700 Sobic009G108700--Sobic003G033700 Sobic002G306000 Sobic002G306000 Sobic009G108700--Sobic002G306000 Sobic002G257200 Sobic002G257200 Sobic009G108700--Sobic002G257200 Sobic009G108700--Sobic001G333900 Sobic009G108700--Sobic002G110300 Sobic001G425800 Sobic001G425800 Sobic009G108700--Sobic001G425800 Sobic003G162000 Sobic003G162000 Sobic002G072600--Sobic003G162000 Sobic010G156000 Sobic010G156000 Sobic002G072600--Sobic010G156000 Sobic002G134600 Sobic002G134600 Sobic002G072600--Sobic002G134600 Sobic004G311900 Sobic004G311900 Sobic002G072600--Sobic004G311900 Sobic006G073200 Sobic006G073200 Sobic002G072600--Sobic006G073200 Sobic004G246900 Sobic004G246900 Sobic002G072600--Sobic004G246900 Sobic008G161700 Sobic008G161700 Sobic002G072600--Sobic008G161700 Sobic001G362200 Sobic001G362200 Sobic002G072600--Sobic001G362200 Sobic006G032900 Sobic006G032900 Sobic002G072600--Sobic006G032900 Sobic008G016100 Sobic008G016100 Sobic003G408300--Sobic008G016100 Sobic002G263200 Sobic002G263200 Sobic003G408300--Sobic002G263200 Sobic007G187900 Sobic007G187900 Sobic003G408300--Sobic007G187900 Sobic002G116500 Sobic002G116500 Sobic003G408300--Sobic002G116500 Sobic001G168100 Sobic001G168100 Sobic003G408300--Sobic001G168100 Sobic006G084000 Sobic006G084000 Sobic003G408300--Sobic006G084000 Sobic002G332200 Sobic002G332200 Sobic003G408300--Sobic002G332200 Sobic006G251500 Sobic006G251500 Sobic003G408300--Sobic006G251500 Sobic009G143800 Sobic009G143800 Sobic003G408300--Sobic009G143800 Sobic006G217200 Sobic006G217200 Sobic001G179900--Sobic006G217200 Sobic001G454301 Sobic001G454301 Sobic001G179900--Sobic001G454301 Sobic007G116400 Sobic007G116400 Sobic001G179900--Sobic007G116400 Sobic004G088400 Sobic004G088400 Sobic001G179900--Sobic004G088400 Sobic002G140800 Sobic002G140800 Sobic001G179900--Sobic002G140800 Sobic010G153466 Sobic010G153466 Sobic001G179900--Sobic010G153466 Sobic003G336800 Sobic003G336800 Sobic001G179900--Sobic003G336800 Sobic009G239351 Sobic009G239351 Sobic001G179900--Sobic009G239351 Sobic009G239301 Sobic009G239301 Sobic001G179900--Sobic009G239301 Sobic001G118700--Sobic001G471000 Sobic001G118700--Sobic001G413800 Sobic010G254900 Sobic010G254900 Sobic001G118700--Sobic010G254900 Sobic001G010300 Sobic001G010300 Sobic001G118700--Sobic001G010300 Sobic004G040200 Sobic004G040200 Sobic001G118700--Sobic004G040200 Sobic006G154100 Sobic006G154100 Sobic001G118700--Sobic006G154100 Sobic004G321700 Sobic004G321700 Sobic001G118700--Sobic004G321700 Sobic001G118700--Sobic001G477700 Sobic002G193300 Sobic002G193300 Sobic001G118700--Sobic002G193300
Octagon: transcription factors


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