Gene annotation
Transcriptome id Sobic.003G081900.1
Synonym Sb03g006870, HSP18.2
Functional annotation hsp20/alpha crystallin family protein, putative, expressed
UniProt C5XQR9
Pfam PF00011
Panther DB PTHR11527:SF152 PTHR11527
NCBI CDD KOG0710; Molecular chaperone (small heat-shock protein Hsp26/Hsp42)
KEGG Orthology K13993; HSP20 family protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G53540 : HSP20-like chaperones superfamily protein
RAP-DB (Rice) LOC_Os01g04370.1 : hsp20/alpha crystallin family protein, putative, expressed
MaizeGDB (Corn) Zm00025a023564 , Zm00025a023567 , Zm00025a023554 , Zm00025a023555 , Zm00025a023557 , Zm00025a001758 , Zm00025a001756 , Zm00025a035577 , Zm00025a001753
Brachypodium KQK04325 , KQK02573 , KQK02572 , KQK20327
Barley HORVU2Hr1G120170.1 , HORVU3Hr1G007380.1 , HORVU3Hr1G006530.1 , HORVU4Hr1G060720.2 , HORVU3Hr1G007500.1 , HORVU3Hr1G007500.2 , HORVU3Hr1G007500.4
Wheat TraesCS7D02G185500 , TraesCS7A02G183800 , TraesCS7B02G088700 , TraesCS7D02G185600 , TraesCS7B02G088600 , TraesCS4A02G092200
Populus -


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cDNA sequences
Sobic.003G081900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G039400 similar to 17.8 kDa class II heat shock protein(PubMedID : 24655390)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@similar to 17.8 kDa class II heat shock protein(PubMedID : 24655390)@similar to 17.8 kDa class II heat shock protein(PubMedID : 24655390)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
2 Sobic.003G431000 spotted leaf 11, putative, expressed -
3 Sobic.003G082000 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
4 Sobic.009G057400 cytochrome c oxidase-related, putative, expressed K02266: cytochrome c oxidase subunit 6a
5 Sobic.009G167000 expressed protein -
6 Sobic.002G080000 - -
7 Sobic.002G188700 armadillo/beta-catenin repeat family protein, putative, expressed -
8 Sobic.001G424400 similar to Putative uncharacterized protein(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Negative regulator of ABA(PubMedID : 30367619)@protein phosphatase 2C, putative, expressed K14497: protein phosphatase 2C
9 Sobic.003G126800 cysteine proteinase inhibitor precursor protein, putative, expressed -
10 Sobic.003G363200 ZOS1-17 - C2H2 zinc finger protein, expressed -
11 Sobic.010G011900 expressed protein -
12 Sobic.001G418600 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
13 Sobic.001G454000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@DnaK family protein, putative, expressed K09489: heat shock 70kDa protein 4
14 Sobic.002G054500 Up-reguralion under drought(PubMedID : 24916767)@expressed protein -
15 Sobic.001G486000 tentative name(PubMedID : 31536532)@nuclear transcription factor Y subunit, putative, expressed K08064: NFYA, nuclear transcription factor Y, alpha
16 Sobic.004G066500 chaperone protein clpB 1, putative, expressed K03695: ATP-dependent Clp protease ATP-binding subunit ClpB
17 Sobic.002G219200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@plant viral response family protein, putative, expressed -
18 Sobic.006G208100 maintain optimal Na+/K+ (PubmedID : 24325391)@Up-reguralion under drought(PubMedID : 24916767)@OsHKT1@4 - Na+ transporter, expressed -
19 Sobic.009G184400 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
20 Sobic.003G321000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@OsPOP4 - Putative Prolyl Oligopeptidase homologue, expressed -


Gene co-expression network
sample Sobic003G081900 Sobic003G081900 Sobic003G039400 Sobic003G039400 Sobic003G081900--Sobic003G039400 Sobic003G431000 Sobic003G431000 Sobic003G081900--Sobic003G431000 Sobic003G082000 Sobic003G082000 Sobic003G081900--Sobic003G082000 Sobic009G057400 Sobic009G057400 Sobic003G081900--Sobic009G057400 Sobic009G167000 Sobic009G167000 Sobic003G081900--Sobic009G167000 Sobic002G080000 Sobic002G080000 Sobic003G081900--Sobic002G080000 Sobic002G188700 Sobic002G188700 Sobic003G081900--Sobic002G188700 Sobic001G424400 Sobic001G424400 Sobic003G081900--Sobic001G424400 Sobic003G126800 Sobic003G126800 Sobic003G081900--Sobic003G126800 Sobic003G039400--Sobic003G431000 Sobic003G039400--Sobic003G081900 Sobic003G039400--Sobic009G167000 Sobic001G398500 Sobic001G398500 Sobic003G039400--Sobic001G398500 Sobic009G184400 Sobic009G184400 Sobic003G039400--Sobic009G184400 Sobic005G139700 Sobic005G139700 Sobic003G039400--Sobic005G139700 Sobic010G200700 Sobic010G200700 Sobic003G039400--Sobic010G200700 Sobic003G363200 Sobic003G363200 Sobic003G039400--Sobic003G363200 Sobic002G248100 Sobic002G248100 Sobic003G039400--Sobic002G248100 Sobic003G431000--Sobic003G363200 Sobic003G431000--Sobic009G167000 Sobic003G431000--Sobic005G139700 Sobic003G431000--Sobic003G039400 Sobic002G197600 Sobic002G197600 Sobic003G431000--Sobic002G197600 Sobic001G403600 Sobic001G403600 Sobic003G431000--Sobic001G403600 Sobic002G021300 Sobic002G021300 Sobic003G431000--Sobic002G021300 Sobic004G281200 Sobic004G281200 Sobic003G431000--Sobic004G281200 Sobic008G036000 Sobic008G036000 Sobic003G431000--Sobic008G036000 Sobic003G082000--Sobic010G200700 Sobic003G082000--Sobic009G167000 Sobic003G082000--Sobic002G188700 Sobic004G297200 Sobic004G297200 Sobic003G082000--Sobic004G297200 Sobic002G219200 Sobic002G219200 Sobic003G082000--Sobic002G219200 Sobic003G082000--Sobic009G057400 Sobic004G042600 Sobic004G042600 Sobic003G082000--Sobic004G042600 Sobic003G082000--Sobic003G363200 Sobic004G300300 Sobic004G300300 Sobic003G082000--Sobic004G300300 Sobic009G057400--Sobic002G219200 Sobic006G208100 Sobic006G208100 Sobic009G057400--Sobic006G208100 Sobic009G057400--Sobic009G167000 Sobic009G057400--Sobic003G082000 Sobic009G057400--Sobic002G188700 Sobic009G057400--Sobic003G363200 Sobic003G268900 Sobic003G268900 Sobic009G057400--Sobic003G268900 Sobic001G028000 Sobic001G028000 Sobic009G057400--Sobic001G028000 Sobic002G012800 Sobic002G012800 Sobic009G057400--Sobic002G012800 Sobic009G167000--Sobic002G021300 Sobic004G244300 Sobic004G244300 Sobic009G167000--Sobic004G244300 Sobic006G194600 Sobic006G194600 Sobic009G167000--Sobic006G194600 Sobic004G244100 Sobic004G244100 Sobic009G167000--Sobic004G244100 Sobic009G167000--Sobic004G281200 Sobic002G217100 Sobic002G217100 Sobic009G167000--Sobic002G217100 Sobic009G076500 Sobic009G076500 Sobic009G167000--Sobic009G076500 Sobic008G058900 Sobic008G058900 Sobic009G167000--Sobic008G058900 Sobic008G059000 Sobic008G059000 Sobic009G167000--Sobic008G059000 Sobic001G189700 Sobic001G189700 Sobic002G080000--Sobic001G189700 Sobic002G080000--Sobic004G042600 Sobic002G080000--Sobic010G200700 Sobic003G012800 Sobic003G012800 Sobic002G080000--Sobic003G012800 Sobic004G280800 Sobic004G280800 Sobic002G080000--Sobic004G280800 Sobic002G080000--Sobic004G297200 Sobic006G228300 Sobic006G228300 Sobic002G080000--Sobic006G228300 Sobic004G053200 Sobic004G053200 Sobic002G080000--Sobic004G053200 Sobic002G080000--Sobic009G184400 Sobic004G268700 Sobic004G268700 Sobic002G188700--Sobic004G268700 Sobic002G188700--Sobic009G167000 Sobic002G188700--Sobic002G021300 Sobic002G188700--Sobic004G300300 Sobic002G188700--Sobic003G082000 Sobic002G188700--Sobic008G058900 Sobic002G188700--Sobic009G076500 Sobic002G188700--Sobic006G208100 Sobic010G201200 Sobic010G201200 Sobic002G188700--Sobic010G201200 Sobic004G116300 Sobic004G116300 Sobic001G424400--Sobic004G116300 Sobic010G011900 Sobic010G011900 Sobic001G424400--Sobic010G011900 Sobic009G161900 Sobic009G161900 Sobic001G424400--Sobic009G161900 Sobic010G147600 Sobic010G147600 Sobic001G424400--Sobic010G147600 Sobic003G281800 Sobic003G281800 Sobic001G424400--Sobic003G281800 Sobic001G155300 Sobic001G155300 Sobic001G424400--Sobic001G155300 Sobic003G378000 Sobic003G378000 Sobic001G424400--Sobic003G378000 Sobic001G241600 Sobic001G241600 Sobic001G424400--Sobic001G241600 Sobic003G354000 Sobic003G354000 Sobic001G424400--Sobic003G354000 Sobic008G058700 Sobic008G058700 Sobic003G126800--Sobic008G058700 Sobic003G252900 Sobic003G252900 Sobic003G126800--Sobic003G252900 Sobic010G088300 Sobic010G088300 Sobic003G126800--Sobic010G088300 Sobic003G031200 Sobic003G031200 Sobic003G126800--Sobic003G031200 Sobic009G070200 Sobic009G070200 Sobic003G126800--Sobic009G070200 Sobic004G297300 Sobic004G297300 Sobic003G126800--Sobic004G297300 Sobic003G358300 Sobic003G358300 Sobic003G126800--Sobic003G358300 Sobic001G066700 Sobic001G066700 Sobic003G126800--Sobic001G066700 Sobic003G039200 Sobic003G039200 Sobic003G126800--Sobic003G039200
Octagon: transcription factors


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