Gene annotation
Transcriptome id Sobic.002G080000.1
Synonym
Functional annotation -
UniProt A0A1B6Q9Y9
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G189700 DNAJ heat shock N-terminal domain-containing protein, putative, expressed -
2 Sobic.004G042600 protein kinase domain containing protein, expressed -
3 Sobic.010G200700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.003G012800 AP2 domain containing protein, expressed -
5 Sobic.004G280800 Tannin1 encodes a WD40 protein homologous to the Arabidopsis proanthocyanidin regulator transparent testa glabra1 (TTG1). (PubmedID : 25272193)@WD40 protein(PubMedID : 22699509)@Transcription factor for tannin accumulation in seed(PubMedID : 22699509)@WD domain, G-beta repeat domain containing protein, expressed K11805: DCAF7, DDB1- and CUL4-associated factor 7
6 Sobic.004G297200 DUF630/DUF632 domains containing protein, putative, expressed -
7 Sobic.006G228300 ethylene-responsive protein related, putative, expressed -
8 Sobic.004G053200 Cupin domain containing protein, expressed -
9 Sobic.009G184400 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
10 Sobic.009G044400 1-aminocyclopropane-1-carboxylate oxidase, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
11 Sobic.003G363200 ZOS1-17 - C2H2 zinc finger protein, expressed -
12 Sobic.006G078400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@abscisic stress-ripening, putative, expressed -
13 Sobic.003G338900 expressed protein -
14 Sobic.003G429300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@NADPH quinone oxidoreductase, putative, expressed -
15 Sobic.003G082000 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
16 Sobic.006G263100 expressed protein -
17 Sobic.001G035000 ZOS3-22 - C2H2 zinc finger protein, expressed -
18 Sobic.006G267000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@harpin-induced protein 1 domain containing protein, expressed -
19 Sobic.001G290400 no apical meristem protein, putative, expressed -
20 Sobic.002G131800 copine, putative, expressed K16280: E3 ubiquitin-protein ligase RGLG


Gene co-expression network
sample Sobic002G080000 Sobic002G080000 Sobic001G189700 Sobic001G189700 Sobic002G080000--Sobic001G189700 Sobic004G042600 Sobic004G042600 Sobic002G080000--Sobic004G042600 Sobic010G200700 Sobic010G200700 Sobic002G080000--Sobic010G200700 Sobic003G012800 Sobic003G012800 Sobic002G080000--Sobic003G012800 Sobic004G280800 Sobic004G280800 Sobic002G080000--Sobic004G280800 Sobic004G297200 Sobic004G297200 Sobic002G080000--Sobic004G297200 Sobic006G228300 Sobic006G228300 Sobic002G080000--Sobic006G228300 Sobic004G053200 Sobic004G053200 Sobic002G080000--Sobic004G053200 Sobic009G184400 Sobic009G184400 Sobic002G080000--Sobic009G184400 Sobic001G189700--Sobic004G053200 Sobic003G338900 Sobic003G338900 Sobic001G189700--Sobic003G338900 Sobic001G189700--Sobic002G080000 Sobic001G189700--Sobic004G280800 Sobic001G290400 Sobic001G290400 Sobic001G189700--Sobic001G290400 Sobic001G403600 Sobic001G403600 Sobic001G189700--Sobic001G403600 Sobic001G189700--Sobic003G012800 Sobic009G044400 Sobic009G044400 Sobic001G189700--Sobic009G044400 Sobic005G139700 Sobic005G139700 Sobic001G189700--Sobic005G139700 Sobic004G042600--Sobic010G200700 Sobic004G042600--Sobic004G297200 Sobic004G042600--Sobic002G080000 Sobic010G175200 Sobic010G175200 Sobic004G042600--Sobic010G175200 Sobic004G042600--Sobic006G228300 Sobic003G363200 Sobic003G363200 Sobic004G042600--Sobic003G363200 Sobic002G219200 Sobic002G219200 Sobic004G042600--Sobic002G219200 Sobic006G078400 Sobic006G078400 Sobic004G042600--Sobic006G078400 Sobic003G429300 Sobic003G429300 Sobic004G042600--Sobic003G429300 Sobic010G200700--Sobic004G297200 Sobic006G089300 Sobic006G089300 Sobic010G200700--Sobic006G089300 Sobic010G200700--Sobic003G012800 Sobic010G200700--Sobic006G228300 Sobic003G373000 Sobic003G373000 Sobic010G200700--Sobic003G373000 Sobic009G066800 Sobic009G066800 Sobic010G200700--Sobic009G066800 Sobic002G036100 Sobic002G036100 Sobic010G200700--Sobic002G036100 Sobic010G245800 Sobic010G245800 Sobic010G200700--Sobic010G245800 Sobic002G131800 Sobic002G131800 Sobic010G200700--Sobic002G131800 Sobic003G012800--Sobic010G200700 Sobic003G268700 Sobic003G268700 Sobic003G012800--Sobic003G268700 Sobic003G012800--Sobic003G373000 Sobic003G012800--Sobic006G089300 Sobic003G012800--Sobic006G228300 Sobic001G209800 Sobic001G209800 Sobic003G012800--Sobic001G209800 Sobic001G077400 Sobic001G077400 Sobic003G012800--Sobic001G077400 Sobic009G217600 Sobic009G217600 Sobic003G012800--Sobic009G217600 Sobic003G012800--Sobic002G036100 Sobic010G228000 Sobic010G228000 Sobic004G280800--Sobic010G228000 Sobic006G263100 Sobic006G263100 Sobic004G280800--Sobic006G263100 Sobic002G118600 Sobic002G118600 Sobic004G280800--Sobic002G118600 Sobic004G280800--Sobic001G290400 Sobic004G280800--Sobic003G338900 Sobic004G025000 Sobic004G025000 Sobic004G280800--Sobic004G025000 Sobic007G011000 Sobic007G011000 Sobic004G280800--Sobic007G011000 Sobic004G280800--Sobic004G053200 Sobic004G280800--Sobic001G189700 Sobic004G297200--Sobic010G200700 Sobic004G297200--Sobic010G175200 Sobic009G247300 Sobic009G247300 Sobic004G297200--Sobic009G247300 Sobic004G297200--Sobic004G042600 Sobic004G297200--Sobic003G268700 Sobic004G297200--Sobic003G012800 Sobic004G297200--Sobic003G363200 Sobic004G297200--Sobic009G066800 Sobic004G297200--Sobic009G044400 Sobic006G228300--Sobic006G089300 Sobic006G228300--Sobic010G200700 Sobic006G179500 Sobic006G179500 Sobic006G228300--Sobic006G179500 Sobic001G040200 Sobic001G040200 Sobic006G228300--Sobic001G040200 Sobic001G538866 Sobic001G538866 Sobic006G228300--Sobic001G538866 Sobic002G140300 Sobic002G140300 Sobic006G228300--Sobic002G140300 Sobic001G095300 Sobic001G095300 Sobic006G228300--Sobic001G095300 Sobic006G228300--Sobic002G131800 Sobic001G341600 Sobic001G341600 Sobic006G228300--Sobic001G341600 Sobic004G053200--Sobic001G189700 Sobic004G053200--Sobic001G290400 Sobic004G053200--Sobic004G280800 Sobic004G053200--Sobic003G338900 Sobic001G473900 Sobic001G473900 Sobic004G053200--Sobic001G473900 Sobic004G053200--Sobic004G025000 Sobic001G476400 Sobic001G476400 Sobic004G053200--Sobic001G476400 Sobic001G081600 Sobic001G081600 Sobic004G053200--Sobic001G081600 Sobic006G095600 Sobic006G095600 Sobic004G053200--Sobic006G095600 Sobic009G184400--Sobic001G209800 Sobic001G441100 Sobic001G441100 Sobic009G184400--Sobic001G441100 Sobic009G184400--Sobic009G217600 Sobic001G035000 Sobic001G035000 Sobic009G184400--Sobic001G035000 Sobic002G248100 Sobic002G248100 Sobic009G184400--Sobic002G248100 Sobic001G398500 Sobic001G398500 Sobic009G184400--Sobic001G398500 Sobic002G294700 Sobic002G294700 Sobic009G184400--Sobic002G294700 Sobic009G184400--Sobic001G077400 Sobic009G184400--Sobic001G476400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.