Gene annotation
| Transcriptome id | Sobic.003G082000.1 |
|---|---|
| Synonym | HSP18.2, Sb03g006880 |
| Functional annotation | Up-reguralion under heat (PubMedID : 24916767) Up-reguralion under combine stress of drought and heat (PubMedID : 24916767) hsp20/alpha crystallin family protein, putative, expressed |
| UniProt | C5XQS0 |
| Pfam | PF00011 |
| Panther DB | PTHR11527 PTHR11527:SF152 |
| NCBI CDD | KOG0710; Molecular chaperone (small heat-shock protein Hsp26/Hsp42) |
| KEGG Orthology | K13993; HSP20 family protein |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT1G53540 : HSP20-like chaperones superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os01g04380.1 : hsp20/alpha crystallin family protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a052789 , Zm00025a023564 , Zm00025a023567 , Zm00025a001763 , Zm00025a023554 , Zm00025a023555 , Zm00025a023557 , Zm00025a001758 , Zm00025a001756 , Zm00025a035577 , Zm00025a001753 |
| Brachypodium | KQK04325 , KQK02573 , KQK02572 , KQK22418 , KQK20327 |
| Barley | HORVU2Hr1G120170.1 , HORVU3Hr1G007380.1 , HORVU3Hr1G006530.1 , HORVU4Hr1G060720.1 , HORVU4Hr1G060720.2 , HORVU3Hr1G007500.1 , HORVU3Hr1G007500.2 , HORVU3Hr1G007500.4 |
| Wheat | TraesCS7D02G185500 , TraesCS7A02G183800 , TraesCS7B02G088700 , TraesCS7D02G185600 , TraesCS7B02G088600 , TraesCS4A02G092200 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.010G200700 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 2 | Sobic.009G167000 | expressed protein | - |
| 3 | Sobic.002G188700 | armadillo/beta-catenin repeat family protein, putative, expressed | - |
| 4 | Sobic.004G297200 | DUF630/DUF632 domains containing protein, putative, expressed | - |
| 5 | Sobic.002G219200 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@plant viral response family protein, putative, expressed | - |
| 6 | Sobic.009G057400 | cytochrome c oxidase-related, putative, expressed | K02266: cytochrome c oxidase subunit 6a |
| 7 | Sobic.004G042600 | protein kinase domain containing protein, expressed | - |
| 8 | Sobic.003G363200 | ZOS1-17 - C2H2 zinc finger protein, expressed | - |
| 9 | Sobic.004G300300 | Up-reguralion under drought(PubMedID : 24916767)@homeobox associated leucine zipper, putative, expressed | - |
| 10 | Sobic.004G268700 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed | K09843: (+)-abscisic acid 8'-hydroxylase |
| 11 | Sobic.002G080000 | - | - |
| 12 | Sobic.006G208100 | maintain optimal Na+/K+ (PubmedID : 24325391)@Up-reguralion under drought(PubMedID : 24916767)@OsHKT1@4 - Na+ transporter, expressed | - |
| 13 | Sobic.003G012800 | AP2 domain containing protein, expressed | - |
| 14 | Sobic.002G207100 | - | - |
| 15 | Sobic.003G039400 | similar to 17.8 kDa class II heat shock protein(PubMedID : 24655390)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@similar to 17.8 kDa class II heat shock protein(PubMedID : 24655390)@similar to 17.8 kDa class II heat shock protein(PubMedID : 24655390)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 16 | Sobic.008G058900 | amino acid transporter, putative, expressed | - |
| 17 | Sobic.010G201200 | expressed protein | - |
| 18 | Sobic.004G219600 | DUF640 domain containing protein, putative, expressed | - |
| 19 | Sobic.010G245800 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxidase precursor, putative, expressed | K00430: peroxidase |
| 20 | Sobic.003G424500 | Putative uncharacterized protein(PubMedID : 24906815)@expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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