Gene annotation
| Transcriptome id | Sobic.003G039400.1 |
|---|---|
| Synonym | HSP17.6II, Sb03g003530 |
| Functional annotation | similar to 17.8 kDa class II heat shock protein (PubMedID : 24655390) SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543) similar to 17.8 kDa class II heat shock protein (PubMedID : 24655390) similar to 17.8 kDa class II heat shock protein (PubMedID : 24655390) Up-reguralion under heat (PubMedID : 24916767) Up-reguralion under combine stress of drought and heat (PubMedID : 24916767) hsp20/alpha crystallin family protein, putative, expressed |
| UniProt | C5XML7 |
| Pfam | PF00011 |
| Panther DB | PTHR11527 PTHR11527:SF93 |
| NCBI CDD | - |
| KEGG Orthology | K13993; HSP20 family protein |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G12020 : 17.6 kDa class II heat shock protein |
|---|---|
| RAP-DB (Rice) | LOC_Os01g08860.1 : hsp20/alpha crystallin family protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a052460 , Zm00025a023136 , Zm00025a035819 , Zm00025a052458 |
| Brachypodium | PNT70100 |
| Barley | HORVU3Hr1G020500.1 , HORVU3Hr1G020520.5 , HORVU3Hr1G020520.6 , HORVU3Hr1G020520.1 , HORVU3Hr1G020520.2 , HORVU3Hr1G020520.3 , HORVU3Hr1G020520.4 , HORVU3Hr1G020490.2 , HORVU3Hr1G020390.1 , HORVU3Hr1G020490.3 |
| Wheat | TraesCS3B02G131100 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G431000 | spotted leaf 11, putative, expressed | - |
| 2 | Sobic.003G081900 | hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 3 | Sobic.009G167000 | expressed protein | - |
| 4 | Sobic.001G398500 | expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@long cell-linked locus protein, putative, expressed | - |
| 5 | Sobic.009G184400 | Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
| 6 | Sobic.005G139700 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@respiratory burst oxidase, putative, expressed | K13447: respiratory burst oxidase |
| 7 | Sobic.010G200700 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 8 | Sobic.003G363200 | ZOS1-17 - C2H2 zinc finger protein, expressed | - |
| 9 | Sobic.002G248100 | expressed protein | - |
| 10 | Sobic.003G012800 | AP2 domain containing protein, expressed | - |
| 11 | Sobic.003G150400 | Trihelix Family(PubMedID : 24864043)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@homeodomain, putative, expressed | - |
| 12 | Sobic.002G080000 | - | - |
| 13 | Sobic.003G268700 | STE_MEKK_ste11_MAP3K.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed | - |
| 14 | Sobic.003G365600 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@MYB family transcription factor, putative, expressed | - |
| 15 | Sobic.010G245800 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxidase precursor, putative, expressed | K00430: peroxidase |
| 16 | Sobic.003G082000 | Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 17 | Sobic.009G057400 | cytochrome c oxidase-related, putative, expressed | K02266: cytochrome c oxidase subunit 6a |
| 18 | Sobic.002G217100 | tyrosine protein kinase domain containing protein, putative, expressed | - |
| 19 | Sobic.009G255500 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@2-aminoethanethiol dioxygenase, putative, expressed | K10712: cysteamine dioxygenase |
| 20 | Sobic.002G219200 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@plant viral response family protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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