Gene annotation
Transcriptome id Sobic.001G486000.2,Sobic.001G486000.1
Synonym NF-YA6, SbNF-YA3, Nuclear Factor Y, Sb01g045500
Functional annotation tentative name (PubMedID : 31536532)
nuclear transcription factor Y subunit, putative, expressed
UniProt C5WVU8 , C5WVV8
Pfam PF02045
Panther DB PTHR12632 PTHR12632:SF16
NCBI CDD -
KEGG Orthology K08064; NFYA, nuclear transcription factor Y, alpha
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT3G14020 : nuclear factor Y, subunit A6
RAP-DB (Rice) LOC_Os03g07880.1 : nuclear transcription factor Y subunit, putative, expressed
MaizeGDB (Corn) Zm00025a000878
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G486000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G251500 inositol 1,3,4,5,6-pentakisphosphate 2-kinase, putative, expressed K10572: inositol-pentakisphosphate 2-kinase
2 Sobic.001G340200 nuclear transcription factor Y subunit, putative, expressed K08064: NFYA, nuclear transcription factor Y, alpha
3 Sobic.008G080000 leucine-rich repeat family protein, putative, expressed -
4 Sobic.009G052600 universal stress protein domain containing protein, putative, expressed -
5 Sobic.010G091300 C2 domain containing protein, putative, expressed -
6 Sobic.003G408300 WD domain, G-beta repeat domain containing protein, expressed K14791: periodic tryptophan protein 1
7 Sobic.009G108700 -(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
8 Sobic.004G066500 chaperone protein clpB 1, putative, expressed K03695: ATP-dependent Clp protease ATP-binding subunit ClpB
9 Sobic.001G454000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@DnaK family protein, putative, expressed K09489: heat shock 70kDa protein 4
10 Sobic.005G120600 Highest expression level in embryo(PubMedID : 27501690)@OsSPL19 - SBP-box gene family member, expressed -
11 Sobic.009G028100 dnaJ domain containing protein, expressed K09510: DnaJ homolog subfamily B member 4
12 Sobic.008G191850 - -
13 Sobic.007G053100 amino acid permease family protein, putative, expressed -
14 Sobic.003G098300 hydroxyproline-rich glycoprotein family protein, putative, expressed -
15 Sobic.002G332200 proteasome inhibitor-related, putative, expressed K06700: proteasome inhibitor subunit 1 (PI31)
16 Sobic.008G111700 expressed protein -
17 Sobic.003G126800 cysteine proteinase inhibitor precursor protein, putative, expressed -
18 Sobic.001G204300 zinc finger, RING-type, putative, expressed -
19 Sobic.009G169100 zinc finger, C3HC4 type domain containing protein, expressed -
20 Sobic.008G058700 metal cation transporter, putative, expressed -


Gene co-expression network
sample Sobic001G486000 Sobic001G486000 Sobic006G251500 Sobic006G251500 Sobic001G486000--Sobic006G251500 Sobic001G340200 Sobic001G340200 Sobic001G486000--Sobic001G340200 Sobic008G080000 Sobic008G080000 Sobic001G486000--Sobic008G080000 Sobic009G052600 Sobic009G052600 Sobic001G486000--Sobic009G052600 Sobic010G091300 Sobic010G091300 Sobic001G486000--Sobic010G091300 Sobic003G408300 Sobic003G408300 Sobic001G486000--Sobic003G408300 Sobic009G108700 Sobic009G108700 Sobic001G486000--Sobic009G108700 Sobic004G066500 Sobic004G066500 Sobic001G486000--Sobic004G066500 Sobic001G454000 Sobic001G454000 Sobic001G486000--Sobic001G454000 Sobic007G053100 Sobic007G053100 Sobic006G251500--Sobic007G053100 Sobic002G266300 Sobic002G266300 Sobic006G251500--Sobic002G266300 Sobic006G251500--Sobic009G052600 Sobic006G053200 Sobic006G053200 Sobic006G251500--Sobic006G053200 Sobic003G427300 Sobic003G427300 Sobic006G251500--Sobic003G427300 Sobic008G191850 Sobic008G191850 Sobic006G251500--Sobic008G191850 Sobic005G045700 Sobic005G045700 Sobic006G251500--Sobic005G045700 Sobic001G254700 Sobic001G254700 Sobic006G251500--Sobic001G254700 Sobic006G251500--Sobic004G066500 Sobic001G340200--Sobic001G486000 Sobic001G340200--Sobic008G080000 Sobic001G340200--Sobic010G091300 Sobic003G252900 Sobic003G252900 Sobic001G340200--Sobic003G252900 Sobic008G058700 Sobic008G058700 Sobic001G340200--Sobic008G058700 Sobic001G340200--Sobic003G408300 Sobic005G034000 Sobic005G034000 Sobic001G340200--Sobic005G034000 Sobic003G424800 Sobic003G424800 Sobic001G340200--Sobic003G424800 Sobic003G126800 Sobic003G126800 Sobic001G340200--Sobic003G126800 Sobic009G193850 Sobic009G193850 Sobic008G080000--Sobic009G193850 Sobic008G080000--Sobic001G486000 Sobic008G080000--Sobic003G408300 Sobic002G177500 Sobic002G177500 Sobic008G080000--Sobic002G177500 Sobic009G065200 Sobic009G065200 Sobic008G080000--Sobic009G065200 Sobic008G111700 Sobic008G111700 Sobic008G080000--Sobic008G111700 Sobic002G148300 Sobic002G148300 Sobic008G080000--Sobic002G148300 Sobic002G088700 Sobic002G088700 Sobic008G080000--Sobic002G088700 Sobic004G057800 Sobic004G057800 Sobic008G080000--Sobic004G057800 Sobic004G347500 Sobic004G347500 Sobic009G052600--Sobic004G347500 Sobic010G024600 Sobic010G024600 Sobic009G052600--Sobic010G024600 Sobic003G098300 Sobic003G098300 Sobic009G052600--Sobic003G098300 Sobic001G386600 Sobic001G386600 Sobic009G052600--Sobic001G386600 Sobic005G021000 Sobic005G021000 Sobic009G052600--Sobic005G021000 Sobic009G052600--Sobic007G053100 Sobic001G261420 Sobic001G261420 Sobic009G052600--Sobic001G261420 Sobic002G177600 Sobic002G177600 Sobic009G052600--Sobic002G177600 Sobic003G011800 Sobic003G011800 Sobic009G052600--Sobic003G011800 Sobic006G245500 Sobic006G245500 Sobic010G091300--Sobic006G245500 Sobic009G043500 Sobic009G043500 Sobic010G091300--Sobic009G043500 Sobic002G332200 Sobic002G332200 Sobic010G091300--Sobic002G332200 Sobic001G205800 Sobic001G205800 Sobic010G091300--Sobic001G205800 Sobic010G091300--Sobic001G486000 Sobic004G166500 Sobic004G166500 Sobic010G091300--Sobic004G166500 Sobic010G091300--Sobic001G340200 Sobic009G117900 Sobic009G117900 Sobic010G091300--Sobic009G117900 Sobic010G091300--Sobic009G052600 Sobic008G016100 Sobic008G016100 Sobic003G408300--Sobic008G016100 Sobic002G263200 Sobic002G263200 Sobic003G408300--Sobic002G263200 Sobic007G187900 Sobic007G187900 Sobic003G408300--Sobic007G187900 Sobic002G116500 Sobic002G116500 Sobic003G408300--Sobic002G116500 Sobic001G168100 Sobic001G168100 Sobic003G408300--Sobic001G168100 Sobic006G084000 Sobic006G084000 Sobic003G408300--Sobic006G084000 Sobic003G408300--Sobic002G332200 Sobic003G408300--Sobic006G251500 Sobic009G143800 Sobic009G143800 Sobic003G408300--Sobic009G143800 Sobic009G066900 Sobic009G066900 Sobic009G108700--Sobic009G066900 Sobic001G154500 Sobic001G154500 Sobic009G108700--Sobic001G154500 Sobic004G226600 Sobic004G226600 Sobic009G108700--Sobic004G226600 Sobic003G033700 Sobic003G033700 Sobic009G108700--Sobic003G033700 Sobic002G306000 Sobic002G306000 Sobic009G108700--Sobic002G306000 Sobic002G257200 Sobic002G257200 Sobic009G108700--Sobic002G257200 Sobic001G333900 Sobic001G333900 Sobic009G108700--Sobic001G333900 Sobic002G110300 Sobic002G110300 Sobic009G108700--Sobic002G110300 Sobic001G425800 Sobic001G425800 Sobic009G108700--Sobic001G425800 Sobic004G066500--Sobic008G191850 Sobic004G066500--Sobic007G053100 Sobic004G033200 Sobic004G033200 Sobic004G066500--Sobic004G033200 Sobic004G066500--Sobic003G427300 Sobic004G066500--Sobic010G024600 Sobic004G066500--Sobic003G098300 Sobic004G066500--Sobic002G266300 Sobic001G044300 Sobic001G044300 Sobic004G066500--Sobic001G044300 Sobic001G508200 Sobic001G508200 Sobic004G066500--Sobic001G508200 Sobic001G004600 Sobic001G004600 Sobic001G454000--Sobic001G004600 Sobic001G454000--Sobic009G052600 Sobic007G191500 Sobic007G191500 Sobic001G454000--Sobic007G191500 Sobic001G454000--Sobic004G066500 Sobic001G454000--Sobic010G024600 Sobic001G454000--Sobic003G098300 Sobic007G168100 Sobic007G168100 Sobic001G454000--Sobic007G168100 Sobic001G454000--Sobic001G261420 Sobic001G336200 Sobic001G336200 Sobic001G454000--Sobic001G336200
Octagon: transcription factors


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