Gene annotation
Transcriptome id Sobic.003G033700.2,Sobic.003G033700.3
Synonym Sb03g003060
Functional annotation expressed protein
UniProt A0A1B6Q183
Pfam PF12928
Panther DB PTHR21027
NCBI CDD KOG4772; Predicted tRNA-splicing endonuclease subunit
KEGG Orthology K15326; tRNA-splicing endonuclease subunit Sen54
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G57360 : -
RAP-DB (Rice) LOC_Os09g32700.1 : expressed protein
MaizeGDB (Corn) Zm00025a014291
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G033700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G353600 sucrose transporters(PubMedID : 23805151)@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@transporter, major facilitator family, putative, expressed K15378: solute carrier family 45, member 1/2/4
2 Sobic.010G071700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
3 Sobic.007G216500 expressed protein -
4 Sobic.002G185300 transporter, putative, expressed -
5 Sobic.009G108700 -(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
6 Sobic.008G058700 metal cation transporter, putative, expressed -
7 Sobic.001G471000 RNase L inhibitor protein-related, putative, expressed K09140: pre-rRNA-processing protein TSR3
8 Sobic.007G178200 ER lumen protein retaining receptor, putative, expressed -
9 Sobic.009G161900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@NDP1, putative, expressed -
10 Sobic.003G342600 DUF640 domain containing protein, putative, expressed -
11 Sobic.009G201500 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@HSP101 Heat shock protein 101("PubMedID : 26759170,PubMedID : 24597475")@heat shock protein 101, putative, expressed K03695: ATP-dependent Clp protease ATP-binding subunit ClpB
12 Sobic.002G395600 bZIP transcription factor domain containing protein, expressed -
13 Sobic.003G189700 thioredoxin, putative, expressed -
14 Sobic.003G036000 NADP-ME(PubMedID : 19549309)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NADP-malic enzyme(PubMedID : 26904072)@-(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
15 Sobic.003G144200 Homeobox domain containing protein, expressed -
16 Sobic.003G129400 glycosyltransferase family 43 protein, putative, expressed K00735: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1
17 Sobic.008G111700 expressed protein -
18 Sobic.004G319300 lipase class 3 family protein, putative, expressed -
19 Sobic.009G159900 homeodomain protein, putative, expressed -
20 Sobic.002G148300 - -


Gene co-expression network
sample Sobic003G033700 Sobic003G033700 Sobic004G353600 Sobic004G353600 Sobic003G033700--Sobic004G353600 Sobic010G071700 Sobic010G071700 Sobic003G033700--Sobic010G071700 Sobic007G216500 Sobic007G216500 Sobic003G033700--Sobic007G216500 Sobic002G185300 Sobic002G185300 Sobic003G033700--Sobic002G185300 Sobic009G108700 Sobic009G108700 Sobic003G033700--Sobic009G108700 Sobic008G058700 Sobic008G058700 Sobic003G033700--Sobic008G058700 Sobic001G471000 Sobic001G471000 Sobic003G033700--Sobic001G471000 Sobic007G178200 Sobic007G178200 Sobic003G033700--Sobic007G178200 Sobic009G161900 Sobic009G161900 Sobic003G033700--Sobic009G161900 Sobic003G272400 Sobic003G272400 Sobic004G353600--Sobic003G272400 Sobic002G306000 Sobic002G306000 Sobic004G353600--Sobic002G306000 Sobic006G078300 Sobic006G078300 Sobic004G353600--Sobic006G078300 Sobic003G087100 Sobic003G087100 Sobic004G353600--Sobic003G087100 Sobic003G378000 Sobic003G378000 Sobic004G353600--Sobic003G378000 Sobic001G157400 Sobic001G157400 Sobic004G353600--Sobic001G157400 Sobic003G332000 Sobic003G332000 Sobic004G353600--Sobic003G332000 Sobic001G075800 Sobic001G075800 Sobic004G353600--Sobic001G075800 Sobic006G203000 Sobic006G203000 Sobic004G353600--Sobic006G203000 Sobic003G342600 Sobic003G342600 Sobic010G071700--Sobic003G342600 Sobic003G141800 Sobic003G141800 Sobic010G071700--Sobic003G141800 Sobic001G063600 Sobic001G063600 Sobic010G071700--Sobic001G063600 Sobic009G170100 Sobic009G170100 Sobic010G071700--Sobic009G170100 Sobic003G129400 Sobic003G129400 Sobic010G071700--Sobic003G129400 Sobic009G030200 Sobic009G030200 Sobic010G071700--Sobic009G030200 Sobic005G231700 Sobic005G231700 Sobic010G071700--Sobic005G231700 Sobic010G265600 Sobic010G265600 Sobic010G071700--Sobic010G265600 Sobic006G032200 Sobic006G032200 Sobic010G071700--Sobic006G032200 Sobic009G179600 Sobic009G179600 Sobic007G216500--Sobic009G179600 Sobic002G395600 Sobic002G395600 Sobic007G216500--Sobic002G395600 Sobic007G216500--Sobic008G058700 Sobic010G030900 Sobic010G030900 Sobic007G216500--Sobic010G030900 Sobic007G216500--Sobic003G342600 Sobic010G101400 Sobic010G101400 Sobic007G216500--Sobic010G101400 Sobic002G270700 Sobic002G270700 Sobic007G216500--Sobic002G270700 Sobic001G311100 Sobic001G311100 Sobic007G216500--Sobic001G311100 Sobic009G184400 Sobic009G184400 Sobic007G216500--Sobic009G184400 Sobic002G185300--Sobic003G129400 Sobic004G155200 Sobic004G155200 Sobic002G185300--Sobic004G155200 Sobic001G112000 Sobic001G112000 Sobic002G185300--Sobic001G112000 Sobic002G185300--Sobic004G353600 Sobic009G201500 Sobic009G201500 Sobic002G185300--Sobic009G201500 Sobic002G185300--Sobic007G216500 Sobic002G225300 Sobic002G225300 Sobic002G185300--Sobic002G225300 Sobic002G185300--Sobic003G033700 Sobic001G510400 Sobic001G510400 Sobic002G185300--Sobic001G510400 Sobic009G066900 Sobic009G066900 Sobic009G108700--Sobic009G066900 Sobic001G154500 Sobic001G154500 Sobic009G108700--Sobic001G154500 Sobic004G226600 Sobic004G226600 Sobic009G108700--Sobic004G226600 Sobic009G108700--Sobic003G033700 Sobic009G108700--Sobic002G306000 Sobic002G257200 Sobic002G257200 Sobic009G108700--Sobic002G257200 Sobic001G333900 Sobic001G333900 Sobic009G108700--Sobic001G333900 Sobic002G110300 Sobic002G110300 Sobic009G108700--Sobic002G110300 Sobic001G425800 Sobic001G425800 Sobic009G108700--Sobic001G425800 Sobic003G410400 Sobic003G410400 Sobic008G058700--Sobic003G410400 Sobic004G083000 Sobic004G083000 Sobic008G058700--Sobic004G083000 Sobic003G126800 Sobic003G126800 Sobic008G058700--Sobic003G126800 Sobic003G252900 Sobic003G252900 Sobic008G058700--Sobic003G252900 Sobic009G070200 Sobic009G070200 Sobic008G058700--Sobic009G070200 Sobic003G043400 Sobic003G043400 Sobic008G058700--Sobic003G043400 Sobic002G044000 Sobic002G044000 Sobic008G058700--Sobic002G044000 Sobic003G358300 Sobic003G358300 Sobic008G058700--Sobic003G358300 Sobic009G160200 Sobic009G160200 Sobic008G058700--Sobic009G160200 Sobic007G112600 Sobic007G112600 Sobic001G471000--Sobic007G112600 Sobic010G235200 Sobic010G235200 Sobic001G471000--Sobic010G235200 Sobic006G142400 Sobic006G142400 Sobic001G471000--Sobic006G142400 Sobic007G042900 Sobic007G042900 Sobic001G471000--Sobic007G042900 Sobic004G068500 Sobic004G068500 Sobic001G471000--Sobic004G068500 Sobic005G155100 Sobic005G155100 Sobic001G471000--Sobic005G155100 Sobic007G077400 Sobic007G077400 Sobic001G471000--Sobic007G077400 Sobic001G477700 Sobic001G477700 Sobic001G471000--Sobic001G477700 Sobic007G162800 Sobic007G162800 Sobic001G471000--Sobic007G162800 Sobic003G392200 Sobic003G392200 Sobic007G178200--Sobic003G392200 Sobic001G416600 Sobic001G416600 Sobic007G178200--Sobic001G416600 Sobic004G025000 Sobic004G025000 Sobic007G178200--Sobic004G025000 Sobic008G016900 Sobic008G016900 Sobic007G178200--Sobic008G016900 Sobic003G361300 Sobic003G361300 Sobic007G178200--Sobic003G361300 Sobic009G134600 Sobic009G134600 Sobic007G178200--Sobic009G134600 Sobic004G245900 Sobic004G245900 Sobic007G178200--Sobic004G245900 Sobic002G330300 Sobic002G330300 Sobic007G178200--Sobic002G330300 Sobic007G178200--Sobic010G071700 Sobic010G147600 Sobic010G147600 Sobic009G161900--Sobic010G147600 Sobic004G058600 Sobic004G058600 Sobic009G161900--Sobic004G058600 Sobic009G161900--Sobic001G471000 Sobic009G161900--Sobic001G333900 Sobic001G193500 Sobic001G193500 Sobic009G161900--Sobic001G193500 Sobic004G066500 Sobic004G066500 Sobic009G161900--Sobic004G066500 Sobic001G424400 Sobic001G424400 Sobic009G161900--Sobic001G424400 Sobic009G161900--Sobic003G378000 Sobic010G170000 Sobic010G170000 Sobic009G161900--Sobic010G170000
Octagon: transcription factors


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