Gene annotation
Transcriptome id Sobic.003G036000.1,Sobic.003G036000.2
Synonym Sb03g003220, ATNADP-ME4,NADP-ME;NADP-ME4;NADP-ME2/3/4, NADP-ME4
Functional annotation NADP-ME (PubMedID : 19549309)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
NADP-malic enzyme (PubMedID : 26904072)
- (PubMedID : 26976818)
NADP-dependent malic enzyme (PubMedID : 27016024)
NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
UniProt A0A1W0VVP6 , A0A1W0VVM3
Pfam PF03949 PF00390 PF00390 PF03949
Panther DB PTHR23406 PTHR23406:SF29
NCBI CDD -
KEGG Orthology K00029; E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
Gene Ontology GO:0004471; malate dehydrogenase (decarboxylating) (NAD+) activity GO:0004471malate dehydrogenase (decarboxylating) (NAD+) activity


Orthologs (automatic annotation)
TAIR AT5G25880 : NADP-malic enzyme 4,NADP-malic enzyme 3
RAP-DB (Rice) LOC_Os01g09320.1 : NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a027741 , Zm00025a043397 , Zm00025a023064 , Zm00025a043399
Brachypodium KQK03103 , KQK03102
Barley HORVU1Hr1G028030.30 , HORVU1Hr1G028030.8 , HORVU3Hr1G019790.9 , HORVU3Hr1G019790.8 , HORVU3Hr1G019790.19 , HORVU3Hr1G019790.7 , HORVU3Hr1G019790.6 , HORVU3Hr1G019790.5 , HORVU3Hr1G019790.4 , HORVU3Hr1G019790.3 , HORVU3Hr1G019790.2 , HORVU3Hr1G019790.1 , HORVU1Hr1G028030.3 , HORVU1Hr1G028030.4 , HORVU1Hr1G028030.5 , HORVU1Hr1G028030.6 , HORVU1Hr1G028030.7 , HORVU3Hr1G019790.18 , HORVU3Hr1G019790.17 , HORVU3Hr1G019790.16 , HORVU3Hr1G019790.15 , HORVU3Hr1G019790.14 , HORVU3Hr1G019790.13 , HORVU3Hr1G019790.12 , HORVU3Hr1G019790.11 , HORVU3Hr1G019790.10 , HORVU1Hr1G028030.13 , HORVU1Hr1G028030.16 , HORVU1Hr1G028030.17 , HORVU1Hr1G028030.14 , HORVU1Hr1G028030.15 , HORVU1Hr1G028030.18 , HORVU1Hr1G028030.19 , HORVU3Hr1G019790.20 , HORVU3Hr1G019790.21 , HORVU1Hr1G028030.29 , HORVU1Hr1G028030.28 , HORVU1Hr1G028030.23 , HORVU1Hr1G028030.22 , HORVU1Hr1G028030.21 , HORVU1Hr1G028030.20 , HORVU1Hr1G028030.27 , HORVU1Hr1G028030.26 , HORVU1Hr1G028030.25
Wheat TraesCS3D02G110700 , TraesCS3B02G128000 , TraesCS3B02G128000 , TraesCS3D02G110700 , TraesCS3A02G108900 , TraesCS3A02G108900
Populus PNT55387 , PNT55389 , PNT55388 , PNT55390 , PNT55391 , PNT55392


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cDNA sequences
Sobic.003G036000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G159900 homeodomain protein, putative, expressed -
2 Sobic.006G208800 YT521-B, putative, expressed -
3 Sobic.006G263100 expressed protein -
4 Sobic.007G101800 pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed -
5 Sobic.002G026300 pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed K00895: pfp, diphosphate-dependent phosphofructokinase
6 Sobic.007G011000 synaptobrevin-related family protein, putative, expressed -
7 Sobic.003G056500 staphylococcal nuclease homologue, putative, expressed -
8 Sobic.010G200700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.010G052800 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
10 Sobic.004G031600 cyclin-T1-1, putative, expressed K15188: cyclin T
11 Sobic.004G300300 Up-reguralion under drought(PubMedID : 24916767)@homeobox associated leucine zipper, putative, expressed -
12 Sobic.003G035700 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA2 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
13 Sobic.004G280800 Tannin1 encodes a WD40 protein homologous to the Arabidopsis proanthocyanidin regulator transparent testa glabra1 (TTG1). (PubmedID : 25272193)@WD40 protein(PubMedID : 22699509)@Transcription factor for tannin accumulation in seed(PubMedID : 22699509)@WD domain, G-beta repeat domain containing protein, expressed K11805: DCAF7, DDB1- and CUL4-associated factor 7
14 Sobic.002G330300 chitin-inducible gibberellin-responsive protein, putative, expressed -
15 Sobic.006G218700 tyrosine protein kinase domain containing protein, putative, expressed -
16 Sobic.004G273200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase
17 Sobic.001G473900 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
18 Sobic.003G023500 syntaxin, putative, expressed K08489: syntaxin 16
19 Sobic.009G134600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@gibberellin receptor GID1L2, putative, expressed K14493: gibberellin receptor GID1
20 Sobic.003G189700 thioredoxin, putative, expressed -


Gene co-expression network
sample Sobic003G036000 Sobic003G036000 Sobic009G159900 Sobic009G159900 Sobic003G036000--Sobic009G159900 Sobic006G208800 Sobic006G208800 Sobic003G036000--Sobic006G208800 Sobic006G263100 Sobic006G263100 Sobic003G036000--Sobic006G263100 Sobic007G101800 Sobic007G101800 Sobic003G036000--Sobic007G101800 Sobic002G026300 Sobic002G026300 Sobic003G036000--Sobic002G026300 Sobic007G011000 Sobic007G011000 Sobic003G036000--Sobic007G011000 Sobic003G056500 Sobic003G056500 Sobic003G036000--Sobic003G056500 Sobic010G200700 Sobic010G200700 Sobic003G036000--Sobic010G200700 Sobic010G052800 Sobic010G052800 Sobic003G036000--Sobic010G052800 Sobic006G032200 Sobic006G032200 Sobic009G159900--Sobic006G032200 Sobic003G144200 Sobic003G144200 Sobic009G159900--Sobic003G144200 Sobic009G170100 Sobic009G170100 Sobic009G159900--Sobic009G170100 Sobic001G075800 Sobic001G075800 Sobic009G159900--Sobic001G075800 Sobic001G157400 Sobic001G157400 Sobic009G159900--Sobic001G157400 Sobic003G342600 Sobic003G342600 Sobic009G159900--Sobic003G342600 Sobic003G361300 Sobic003G361300 Sobic009G159900--Sobic003G361300 Sobic004G273200 Sobic004G273200 Sobic009G159900--Sobic004G273200 Sobic002G023900 Sobic002G023900 Sobic009G159900--Sobic002G023900 Sobic006G208800--Sobic003G036000 Sobic001G381800 Sobic001G381800 Sobic006G208800--Sobic001G381800 Sobic006G218700 Sobic006G218700 Sobic006G208800--Sobic006G218700 Sobic004G325700 Sobic004G325700 Sobic006G208800--Sobic004G325700 Sobic006G208800--Sobic006G263100 Sobic006G208800--Sobic007G011000 Sobic004G280800 Sobic004G280800 Sobic006G208800--Sobic004G280800 Sobic001G464900 Sobic001G464900 Sobic006G208800--Sobic001G464900 Sobic003G396000 Sobic003G396000 Sobic006G208800--Sobic003G396000 Sobic006G263100--Sobic004G280800 Sobic010G246000 Sobic010G246000 Sobic006G263100--Sobic010G246000 Sobic001G290400 Sobic001G290400 Sobic006G263100--Sobic001G290400 Sobic002G379400 Sobic002G379400 Sobic006G263100--Sobic002G379400 Sobic002G330300 Sobic002G330300 Sobic006G263100--Sobic002G330300 Sobic001G147200 Sobic001G147200 Sobic006G263100--Sobic001G147200 Sobic002G294700 Sobic002G294700 Sobic006G263100--Sobic002G294700 Sobic010G228000 Sobic010G228000 Sobic006G263100--Sobic010G228000 Sobic001G409900 Sobic001G409900 Sobic006G263100--Sobic001G409900 Sobic007G101800--Sobic009G170100 Sobic004G300300 Sobic004G300300 Sobic007G101800--Sobic004G300300 Sobic010G265600 Sobic010G265600 Sobic007G101800--Sobic010G265600 Sobic010G105800 Sobic010G105800 Sobic007G101800--Sobic010G105800 Sobic001G473900 Sobic001G473900 Sobic007G101800--Sobic001G473900 Sobic009G071800 Sobic009G071800 Sobic007G101800--Sobic009G071800 Sobic007G101800--Sobic006G032200 Sobic002G203000 Sobic002G203000 Sobic007G101800--Sobic002G203000 Sobic004G084100 Sobic004G084100 Sobic007G101800--Sobic004G084100 Sobic002G026300--Sobic003G036000 Sobic002G026300--Sobic007G101800 Sobic002G026300--Sobic010G105800 Sobic002G026300--Sobic010G228000 Sobic010G225100 Sobic010G225100 Sobic002G026300--Sobic010G225100 Sobic010G041700 Sobic010G041700 Sobic002G026300--Sobic010G041700 Sobic009G208800 Sobic009G208800 Sobic002G026300--Sobic009G208800 Sobic003G035700 Sobic003G035700 Sobic002G026300--Sobic003G035700 Sobic007G188100 Sobic007G188100 Sobic002G026300--Sobic007G188100 Sobic002G118600 Sobic002G118600 Sobic007G011000--Sobic002G118600 Sobic007G011000--Sobic002G330300 Sobic007G011000--Sobic010G228000 Sobic007G212200 Sobic007G212200 Sobic007G011000--Sobic007G212200 Sobic007G011000--Sobic004G280800 Sobic003G425200 Sobic003G425200 Sobic007G011000--Sobic003G425200 Sobic002G354900 Sobic002G354900 Sobic007G011000--Sobic002G354900 Sobic007G011000--Sobic010G041700 Sobic004G025000 Sobic004G025000 Sobic007G011000--Sobic004G025000 Sobic003G056500--Sobic009G159900 Sobic009G134600 Sobic009G134600 Sobic003G056500--Sobic009G134600 Sobic003G056500--Sobic004G273200 Sobic003G056500--Sobic006G218700 Sobic002G141000 Sobic002G141000 Sobic003G056500--Sobic002G141000 Sobic003G056500--Sobic003G036000 Sobic009G230700 Sobic009G230700 Sobic003G056500--Sobic009G230700 Sobic001G342600 Sobic001G342600 Sobic003G056500--Sobic001G342600 Sobic003G424500 Sobic003G424500 Sobic003G056500--Sobic003G424500 Sobic004G297200 Sobic004G297200 Sobic010G200700--Sobic004G297200 Sobic006G089300 Sobic006G089300 Sobic010G200700--Sobic006G089300 Sobic003G012800 Sobic003G012800 Sobic010G200700--Sobic003G012800 Sobic006G228300 Sobic006G228300 Sobic010G200700--Sobic006G228300 Sobic003G373000 Sobic003G373000 Sobic010G200700--Sobic003G373000 Sobic009G066800 Sobic009G066800 Sobic010G200700--Sobic009G066800 Sobic002G036100 Sobic002G036100 Sobic010G200700--Sobic002G036100 Sobic010G245800 Sobic010G245800 Sobic010G200700--Sobic010G245800 Sobic002G131800 Sobic002G131800 Sobic010G200700--Sobic002G131800 Sobic010G052800--Sobic002G330300 Sobic002G413000 Sobic002G413000 Sobic010G052800--Sobic002G413000 Sobic002G293300 Sobic002G293300 Sobic010G052800--Sobic002G293300 Sobic001G482100 Sobic001G482100 Sobic010G052800--Sobic001G482100 Sobic004G031600 Sobic004G031600 Sobic010G052800--Sobic004G031600 Sobic010G052800--Sobic006G263100 Sobic010G052800--Sobic002G379400 Sobic010G052800--Sobic004G280800 Sobic007G059900 Sobic007G059900 Sobic010G052800--Sobic007G059900
Octagon: transcription factors


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