Gene annotation
Transcriptome id Sobic.004G273200.1
Synonym XTR4, Sb04g031050, XTH30
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
glycosyl hydrolases family 16, putative, expressed
UniProt C5Y0G1
Pfam PF06955 PF00722
Panther DB PTHR31062 PTHR31062:SF16
NCBI CDD -
KEGG Orthology K08235; xyloglucan:xyloglucosyl transferase
Gene Ontology GO:0016762; xyloglucan:xyloglucosyl transferase activity GO:0006073cellular glucan metabolic process GO:0005618cell wall GO:0005975carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT1G32170 : xyloglucan endotransglucosylase/hydrolase 30
RAP-DB (Rice) LOC_Os02g46910.1 : glycosyl hydrolases family 16, putative, expressed
MaizeGDB (Corn) Zm00025a032395 , Zm00025a021635 , Zm00025a034970 , Zm00025a052940 , Zm00025a003531 , Zm00025a046886
Brachypodium KQJ97938 , KQK00866 , KQK22653
Barley HORVU4Hr1G064220.4 , HORVU5Hr1G123920.1 , HORVU5Hr1G123920.2 , HORVU5Hr1G123920.3 , HORVU6Hr1G067470.6 , HORVU6Hr1G067470.7 , HORVU6Hr1G067470.4 , HORVU6Hr1G067470.5 , HORVU6Hr1G067470.2 , HORVU6Hr1G067470.3 , HORVU6Hr1G067470.1 , HORVU4Hr1G064220.1 , HORVU4Hr1G064220.2 , HORVU4Hr1G064220.3 , HORVU0Hr1G021280.4 , HORVU0Hr1G021280.1 , HORVU0Hr1G021280.3 , HORVU0Hr1G021280.2 , HORVU0Hr1G021280.5
Wheat TraesCSU02G018400 , TraesCS6B02G293500 , TraesCS1D02G199300 , TraesCS6A02G088000 , TraesCS1A02G195900 , TraesCS4A02G073300 , TraesCS4A02G073300 , TraesCS4B02G229500 , TraesCS1B02G210500 , TraesCS4D02G230600 , TraesCS6A02G266100 , TraesCS6D02G248500 , TraesCS6B02G110400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G197600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-lg.2 - DUF26 kinases have homology to DUF26 containing loci, expressed -
2 Sobic.002G270700 OsRhmbd16 - Putative Rhomboid homologue, expressed -
3 Sobic.009G159900 homeodomain protein, putative, expressed -
4 Sobic.001G081600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
5 Sobic.004G281200 chitin-inducible gibberellin-responsive protein 2, putative, expressed -
6 Sobic.004G025000 CAMK_CAMK_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
7 Sobic.002G344700 remorin, putative, expressed -
8 Sobic.001G476400 - -
9 Sobic.003G338900 expressed protein -
10 Sobic.006G210300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
11 Sobic.004G244300 formin-like protein 3 precursor, putative, expressed -
12 Sobic.010G076600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Serine/threonine-protein kinase RIPK(PubMedID : 31721651)@tyrosine protein kinase domain containing protein, putative, expressed -
13 Sobic.009G170100 DUF640 domain containing protein, putative, expressed -
14 Sobic.003G056500 staphylococcal nuclease homologue, putative, expressed -
15 Sobic.001G370600 expressed protein -
16 Sobic.001G462800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
17 Sobic.004G283300 AP2 domain containing protein, expressed -
18 Sobic.006G032200 heavy metal-associated domain containing protein, expressed -
19 Sobic.004G280800 Tannin1 encodes a WD40 protein homologous to the Arabidopsis proanthocyanidin regulator transparent testa glabra1 (TTG1). (PubmedID : 25272193)@WD40 protein(PubMedID : 22699509)@Transcription factor for tannin accumulation in seed(PubMedID : 22699509)@WD domain, G-beta repeat domain containing protein, expressed K11805: DCAF7, DDB1- and CUL4-associated factor 7
20 Sobic.007G011000 synaptobrevin-related family protein, putative, expressed -


Gene co-expression network
sample Sobic004G273200 Sobic004G273200 Sobic002G197600 Sobic002G197600 Sobic004G273200--Sobic002G197600 Sobic002G270700 Sobic002G270700 Sobic004G273200--Sobic002G270700 Sobic009G159900 Sobic009G159900 Sobic004G273200--Sobic009G159900 Sobic001G081600 Sobic001G081600 Sobic004G273200--Sobic001G081600 Sobic004G281200 Sobic004G281200 Sobic004G273200--Sobic004G281200 Sobic004G025000 Sobic004G025000 Sobic004G273200--Sobic004G025000 Sobic002G344700 Sobic002G344700 Sobic004G273200--Sobic002G344700 Sobic001G476400 Sobic001G476400 Sobic004G273200--Sobic001G476400 Sobic003G338900 Sobic003G338900 Sobic004G273200--Sobic003G338900 Sobic002G197600--Sobic001G081600 Sobic002G217100 Sobic002G217100 Sobic002G197600--Sobic002G217100 Sobic001G462800 Sobic001G462800 Sobic002G197600--Sobic001G462800 Sobic002G197600--Sobic004G281200 Sobic006G210300 Sobic006G210300 Sobic002G197600--Sobic006G210300 Sobic002G367900 Sobic002G367900 Sobic002G197600--Sobic002G367900 Sobic008G036000 Sobic008G036000 Sobic002G197600--Sobic008G036000 Sobic004G244100 Sobic004G244100 Sobic002G197600--Sobic004G244100 Sobic004G176900 Sobic004G176900 Sobic002G197600--Sobic004G176900 Sobic002G270700--Sobic004G273200 Sobic003G392200 Sobic003G392200 Sobic002G270700--Sobic003G392200 Sobic001G525400 Sobic001G525400 Sobic002G270700--Sobic001G525400 Sobic002G270700--Sobic003G338900 Sobic006G267700 Sobic006G267700 Sobic002G270700--Sobic006G267700 Sobic002G330300 Sobic002G330300 Sobic002G270700--Sobic002G330300 Sobic007G178200 Sobic007G178200 Sobic002G270700--Sobic007G178200 Sobic006G263100 Sobic006G263100 Sobic002G270700--Sobic006G263100 Sobic002G270700--Sobic002G197600 Sobic006G032200 Sobic006G032200 Sobic009G159900--Sobic006G032200 Sobic003G144200 Sobic003G144200 Sobic009G159900--Sobic003G144200 Sobic009G170100 Sobic009G170100 Sobic009G159900--Sobic009G170100 Sobic001G075800 Sobic001G075800 Sobic009G159900--Sobic001G075800 Sobic001G157400 Sobic001G157400 Sobic009G159900--Sobic001G157400 Sobic003G342600 Sobic003G342600 Sobic009G159900--Sobic003G342600 Sobic003G361300 Sobic003G361300 Sobic009G159900--Sobic003G361300 Sobic009G159900--Sobic004G273200 Sobic002G023900 Sobic002G023900 Sobic009G159900--Sobic002G023900 Sobic001G081600--Sobic001G462800 Sobic001G081600--Sobic002G217100 Sobic001G081600--Sobic006G210300 Sobic004G283300 Sobic004G283300 Sobic001G081600--Sobic004G283300 Sobic001G081600--Sobic002G197600 Sobic001G081600--Sobic004G281200 Sobic001G081600--Sobic002G344700 Sobic001G081600--Sobic004G025000 Sobic001G081600--Sobic001G476400 Sobic010G016500 Sobic010G016500 Sobic004G281200--Sobic010G016500 Sobic004G244300 Sobic004G244300 Sobic004G281200--Sobic004G244300 Sobic008G059000 Sobic008G059000 Sobic004G281200--Sobic008G059000 Sobic006G194600 Sobic006G194600 Sobic004G281200--Sobic006G194600 Sobic006G203000 Sobic006G203000 Sobic004G281200--Sobic006G203000 Sobic004G281200--Sobic002G217100 Sobic004G281200--Sobic006G210300 Sobic004G281200--Sobic001G081600 Sobic004G281200--Sobic004G244100 Sobic004G025000--Sobic001G081600 Sobic002G379400 Sobic002G379400 Sobic004G025000--Sobic002G379400 Sobic006G095600 Sobic006G095600 Sobic004G025000--Sobic006G095600 Sobic004G025000--Sobic002G344700 Sobic004G025000--Sobic002G330300 Sobic004G025000--Sobic001G476400 Sobic001G063600 Sobic001G063600 Sobic004G025000--Sobic001G063600 Sobic001G314700 Sobic001G314700 Sobic004G025000--Sobic001G314700 Sobic010G076700 Sobic010G076700 Sobic004G025000--Sobic010G076700 Sobic002G344700--Sobic004G283300 Sobic002G344700--Sobic001G081600 Sobic002G344700--Sobic001G462800 Sobic002G344700--Sobic006G032200 Sobic002G344700--Sobic004G025000 Sobic002G344700--Sobic009G170100 Sobic002G344700--Sobic004G281200 Sobic002G344700--Sobic006G210300 Sobic002G344700--Sobic002G217100 Sobic001G476400--Sobic001G063600 Sobic001G051600 Sobic001G051600 Sobic001G476400--Sobic001G051600 Sobic001G473900 Sobic001G473900 Sobic001G476400--Sobic001G473900 Sobic010G076600 Sobic010G076600 Sobic001G476400--Sobic010G076600 Sobic001G476400--Sobic001G081600 Sobic010G080400 Sobic010G080400 Sobic001G476400--Sobic010G080400 Sobic001G476400--Sobic006G095600 Sobic001G476400--Sobic004G283300 Sobic001G489600 Sobic001G489600 Sobic001G476400--Sobic001G489600 Sobic001G189700 Sobic001G189700 Sobic003G338900--Sobic001G189700 Sobic003G338900--Sobic010G076600 Sobic009G217600 Sobic009G217600 Sobic003G338900--Sobic009G217600 Sobic003G338900--Sobic002G379400 Sobic003G338900--Sobic001G476400 Sobic001G341600 Sobic001G341600 Sobic003G338900--Sobic001G341600 Sobic001G290400 Sobic001G290400 Sobic003G338900--Sobic001G290400 Sobic003G296700 Sobic003G296700 Sobic003G338900--Sobic003G296700 Sobic003G338900--Sobic001G473900
Octagon: transcription factors


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