Gene annotation
Transcriptome id Sobic.002G270700.1
Synonym ATRBL3, RBL3, Sb02g030450
Functional annotation OsRhmbd16 - Putative Rhomboid homologue, expressed
UniProt C5X638
Pfam PF01694
Panther DB PTHR22936 PTHR22936:SF34
NCBI CDD KOG2289; Rhomboid family proteins
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0004252serine-type endopeptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT5G07250 : RHOMBOID-like protein 3
RAP-DB (Rice) LOC_Os09g35730.1 : OsRhmbd16 - Putative Rhomboid homologue, expressed
MaizeGDB (Corn) Zm00025a014398 , Zm00025a010173 , Zm00025a047723 , Zm00025a054633 , Zm00025a030935 , Zm00025a045272 , Zm00025a002323 , Zm00025a033644 , Zm00025a029084 , Zm00025a014810
Brachypodium KQJ84106 , KQJ91129 , KQJ99262
Barley HORVU5Hr1G080690.2 , HORVU5Hr1G080690.3 , HORVU5Hr1G080690.1 , HORVU2Hr1G095170.2 , HORVU2Hr1G095170.3 , HORVU2Hr1G095170.6 , HORVU2Hr1G095170.7 , HORVU2Hr1G095170.4 , HORVU2Hr1G095170.5 , HORVU7Hr1G056630.1 , HORVU7Hr1G056630.3 , HORVU7Hr1G056630.2
Wheat TraesCS2D02G398500 , TraesCS5A02G314000 , TraesCS5D02G320400 , TraesCS7B02G168100 , TraesCS2A02G401000 , TraesCS5B02G314900 , TraesCS2B02G419100 , TraesCS5B02G314900 , TraesCS5A02G314000 , TraesCS7D02G270400 , TraesCS7A02G269900
Populus -


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cDNA sequences
Sobic.002G270700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G273200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase
2 Sobic.003G392200 CXE carboxylesterase, putative, expressed -
3 Sobic.001G525400 receptor-like protein kinase At3g46290 precursor, putative, expressed -
4 Sobic.003G338900 expressed protein -
5 Sobic.006G267700 fiber protein Fb34, putative, expressed -
6 Sobic.002G330300 chitin-inducible gibberellin-responsive protein, putative, expressed -
7 Sobic.007G178200 ER lumen protein retaining receptor, putative, expressed -
8 Sobic.006G263100 expressed protein -
9 Sobic.002G197600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-lg.2 - DUF26 kinases have homology to DUF26 containing loci, expressed -
10 Sobic.002G379400 CAMK_CAMK_like.7 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
11 Sobic.004G280800 Tannin1 encodes a WD40 protein homologous to the Arabidopsis proanthocyanidin regulator transparent testa glabra1 (TTG1). (PubmedID : 25272193)@WD40 protein(PubMedID : 22699509)@Transcription factor for tannin accumulation in seed(PubMedID : 22699509)@WD domain, G-beta repeat domain containing protein, expressed K11805: DCAF7, DDB1- and CUL4-associated factor 7
12 Sobic.004G025000 CAMK_CAMK_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
13 Sobic.009G159900 homeodomain protein, putative, expressed -
14 Sobic.010G105800 calmodulin-binding heat-shock protein, putative, expressed -
15 Sobic.001G217000 DUF584 domain containing protein, putative, expressed -
16 Sobic.001G075800 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
17 Sobic.004G257300 GPI-anchored protein, putative, expressed -
18 Sobic.001G398500 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@long cell-linked locus protein, putative, expressed -
19 Sobic.007G216500 expressed protein -
20 Sobic.009G184400 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -


Gene co-expression network
sample Sobic002G270700 Sobic002G270700 Sobic004G273200 Sobic004G273200 Sobic002G270700--Sobic004G273200 Sobic003G392200 Sobic003G392200 Sobic002G270700--Sobic003G392200 Sobic001G525400 Sobic001G525400 Sobic002G270700--Sobic001G525400 Sobic003G338900 Sobic003G338900 Sobic002G270700--Sobic003G338900 Sobic006G267700 Sobic006G267700 Sobic002G270700--Sobic006G267700 Sobic002G330300 Sobic002G330300 Sobic002G270700--Sobic002G330300 Sobic007G178200 Sobic007G178200 Sobic002G270700--Sobic007G178200 Sobic006G263100 Sobic006G263100 Sobic002G270700--Sobic006G263100 Sobic002G197600 Sobic002G197600 Sobic002G270700--Sobic002G197600 Sobic004G273200--Sobic002G197600 Sobic004G273200--Sobic002G270700 Sobic009G159900 Sobic009G159900 Sobic004G273200--Sobic009G159900 Sobic001G081600 Sobic001G081600 Sobic004G273200--Sobic001G081600 Sobic004G281200 Sobic004G281200 Sobic004G273200--Sobic004G281200 Sobic004G025000 Sobic004G025000 Sobic004G273200--Sobic004G025000 Sobic002G344700 Sobic002G344700 Sobic004G273200--Sobic002G344700 Sobic001G476400 Sobic001G476400 Sobic004G273200--Sobic001G476400 Sobic004G273200--Sobic003G338900 Sobic003G392200--Sobic007G178200 Sobic007G188100 Sobic007G188100 Sobic003G392200--Sobic007G188100 Sobic003G392200--Sobic001G525400 Sobic003G392200--Sobic002G270700 Sobic003G392200--Sobic002G197600 Sobic009G171100 Sobic009G171100 Sobic003G392200--Sobic009G171100 Sobic003G392200--Sobic001G081600 Sobic002G395600 Sobic002G395600 Sobic003G392200--Sobic002G395600 Sobic001G063600 Sobic001G063600 Sobic003G392200--Sobic001G063600 Sobic001G525400--Sobic009G171100 Sobic003G253500 Sobic003G253500 Sobic001G525400--Sobic003G253500 Sobic002G353400 Sobic002G353400 Sobic001G525400--Sobic002G353400 Sobic001G525400--Sobic007G188100 Sobic001G370600 Sobic001G370600 Sobic001G525400--Sobic001G370600 Sobic001G525400--Sobic002G330300 Sobic007G011000 Sobic007G011000 Sobic001G525400--Sobic007G011000 Sobic001G525400--Sobic003G338900 Sobic001G525400--Sobic003G392200 Sobic001G189700 Sobic001G189700 Sobic003G338900--Sobic001G189700 Sobic010G076600 Sobic010G076600 Sobic003G338900--Sobic010G076600 Sobic009G217600 Sobic009G217600 Sobic003G338900--Sobic009G217600 Sobic002G379400 Sobic002G379400 Sobic003G338900--Sobic002G379400 Sobic003G338900--Sobic001G476400 Sobic001G341600 Sobic001G341600 Sobic003G338900--Sobic001G341600 Sobic001G290400 Sobic001G290400 Sobic003G338900--Sobic001G290400 Sobic003G296700 Sobic003G296700 Sobic003G338900--Sobic003G296700 Sobic001G473900 Sobic001G473900 Sobic003G338900--Sobic001G473900 Sobic006G267700--Sobic002G270700 Sobic010G050900 Sobic010G050900 Sobic006G267700--Sobic010G050900 Sobic001G217000 Sobic001G217000 Sobic006G267700--Sobic001G217000 Sobic004G268700 Sobic004G268700 Sobic006G267700--Sobic004G268700 Sobic006G267700--Sobic002G379400 Sobic006G267700--Sobic003G392200 Sobic006G267700--Sobic007G011000 Sobic002G210300 Sobic002G210300 Sobic006G267700--Sobic002G210300 Sobic006G267700--Sobic004G025000 Sobic008G016900 Sobic008G016900 Sobic002G330300--Sobic008G016900 Sobic002G330300--Sobic002G379400 Sobic010G052800 Sobic010G052800 Sobic002G330300--Sobic010G052800 Sobic010G228000 Sobic010G228000 Sobic002G330300--Sobic010G228000 Sobic002G330300--Sobic007G011000 Sobic002G330300--Sobic004G025000 Sobic002G118600 Sobic002G118600 Sobic002G330300--Sobic002G118600 Sobic002G330300--Sobic006G263100 Sobic002G330300--Sobic007G188100 Sobic007G178200--Sobic003G392200 Sobic001G416600 Sobic001G416600 Sobic007G178200--Sobic001G416600 Sobic007G178200--Sobic004G025000 Sobic007G178200--Sobic008G016900 Sobic003G361300 Sobic003G361300 Sobic007G178200--Sobic003G361300 Sobic009G134600 Sobic009G134600 Sobic007G178200--Sobic009G134600 Sobic004G245900 Sobic004G245900 Sobic007G178200--Sobic004G245900 Sobic007G178200--Sobic002G330300 Sobic010G071700 Sobic010G071700 Sobic007G178200--Sobic010G071700 Sobic004G280800 Sobic004G280800 Sobic006G263100--Sobic004G280800 Sobic010G246000 Sobic010G246000 Sobic006G263100--Sobic010G246000 Sobic006G263100--Sobic001G290400 Sobic006G263100--Sobic002G379400 Sobic006G263100--Sobic002G330300 Sobic001G147200 Sobic001G147200 Sobic006G263100--Sobic001G147200 Sobic002G294700 Sobic002G294700 Sobic006G263100--Sobic002G294700 Sobic006G263100--Sobic010G228000 Sobic001G409900 Sobic001G409900 Sobic006G263100--Sobic001G409900 Sobic002G197600--Sobic001G081600 Sobic002G217100 Sobic002G217100 Sobic002G197600--Sobic002G217100 Sobic001G462800 Sobic001G462800 Sobic002G197600--Sobic001G462800 Sobic002G197600--Sobic004G281200 Sobic006G210300 Sobic006G210300 Sobic002G197600--Sobic006G210300 Sobic002G367900 Sobic002G367900 Sobic002G197600--Sobic002G367900 Sobic008G036000 Sobic008G036000 Sobic002G197600--Sobic008G036000 Sobic004G244100 Sobic004G244100 Sobic002G197600--Sobic004G244100 Sobic004G176900 Sobic004G176900 Sobic002G197600--Sobic004G176900
Octagon: transcription factors


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