Gene annotation
Transcriptome id Sobic.007G046000.1
Synonym SPO11-2, Sb07g003800
Functional annotation OsTOP6A2 - Topoisomerase 6 subunit A homolog 2, expressed
UniProt A0A1B6PFK1
Pfam PF04406
Panther DB PTHR10848 PTHR10848:SF1
NCBI CDD KOG2795; Catalytic subunit of the meiotic double strand break transesterase
KEGG Orthology K10878; meiotic recombination protein SPO11
Gene Ontology GO:0006259; DNA metabolic process GO:0005694chromosome GO:0005524ATP binding GO:0003824catalytic activity GO:0003677DNA binding GO:0000737DNA catabolic process, endonucleolytic


Orthologs (automatic annotation)
TAIR AT1G63990 : sporulation 11-2
RAP-DB (Rice) LOC_Os08g06050.1 : OsTOP6A2 - Topoisomerase 6 subunit A homolog 2, expressed
MaizeGDB (Corn) Zm00025a030087
Brachypodium KQJ95333
Barley HORVU7Hr1G071060.22 , HORVU7Hr1G071060.23 , HORVU7Hr1G071060.20 , HORVU7Hr1G071060.21 , HORVU7Hr1G071060.26 , HORVU7Hr1G071060.27 , HORVU7Hr1G071060.24 , HORVU7Hr1G071060.25 , HORVU7Hr1G071060.28 , HORVU7Hr1G071060.29 , HORVU7Hr1G071060.14 , HORVU7Hr1G071060.9 , HORVU7Hr1G071060.8 , HORVU7Hr1G071060.3 , HORVU7Hr1G071060.2 , HORVU7Hr1G071060.1 , HORVU7Hr1G071060.7 , HORVU7Hr1G071060.6 , HORVU7Hr1G071060.5 , HORVU7Hr1G071060.4 , HORVU7Hr1G071060.31 , HORVU7Hr1G071060.30 , HORVU7Hr1G071060.19 , HORVU7Hr1G071060.18 , HORVU7Hr1G071060.15 , HORVU7Hr1G071060.13 , HORVU7Hr1G071060.12 , HORVU7Hr1G071060.11 , HORVU7Hr1G071060.10 , HORVU7Hr1G071060.17 , HORVU7Hr1G071060.16 , HORVU7Hr1G071060.33 , HORVU7Hr1G071060.32
Wheat TraesCS7D02G296000 , TraesCS7D02G296000 , TraesCS7B02G201200 , TraesCS7B02G201200 , TraesCS7A02G300300 , TraesCS7A02G300300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G108700 -(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
2 Sobic.007G178401 - -
3 Sobic.007G045900 integral membrane protein DUF6 domain containing protein, expressed -
4 Sobic.002G043500 aldehyde oxidase, putative, expressed K09842: abscisic-aldehyde oxidase
5 Sobic.001G333900 Diacylglycerol kinase 1 DGK1 (At)(PubMedID : 27208977)@diacylglycerol kinase 1, putative, expressed K00901: dgkA, diacylglycerol kinase (ATP)
6 Sobic.008G088839 - -
7 Sobic.005G079700 expressed protein -
8 Sobic.004G108501 - -
9 Sobic.009G161900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@NDP1, putative, expressed -
10 Sobic.007G074500 aminotransferase, putative, expressed K16871: 4-aminobutyrate---pyruvate transaminase
11 Sobic.003G033700 expressed protein K15326: tRNA-splicing endonuclease subunit Sen54
12 Sobic.008G031300 nucleotidyltransferase, putative, expressed -
13 Sobic.003G075400 expressed protein K07466: RFA1, RPA1, replication factor A1
14 Sobic.010G170000 Triacylglycerol biosynthesis defect 1(PubMedID : 26320239)@O-acyltransferase, putative, expressed K11155: diacylglycerol O-acyltransferase 1
15 Sobic.001G241600 MBTB52 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
16 Sobic.001G112000 3,4-dihydroxy-2-butanone kinase, putative, expressed K00863: DAK, triose/dihydroxyacetone kinase / FAD-AMP lyase (cyclizing)
17 Sobic.010G011900 expressed protein -
18 Sobic.006G249200 expressed protein -
19 Sobic.006G088400 OsFBX135 - F-box domain containing protein, expressed -
20 Sobic.001G517200 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed -


Gene co-expression network
sample Sobic007G046000 Sobic007G046000 Sobic009G108700 Sobic009G108700 Sobic007G046000--Sobic009G108700 Sobic007G178401 Sobic007G178401 Sobic007G046000--Sobic007G178401 Sobic007G045900 Sobic007G045900 Sobic007G046000--Sobic007G045900 Sobic002G043500 Sobic002G043500 Sobic007G046000--Sobic002G043500 Sobic001G333900 Sobic001G333900 Sobic007G046000--Sobic001G333900 Sobic008G088839 Sobic008G088839 Sobic007G046000--Sobic008G088839 Sobic005G079700 Sobic005G079700 Sobic007G046000--Sobic005G079700 Sobic004G108501 Sobic004G108501 Sobic007G046000--Sobic004G108501 Sobic009G161900 Sobic009G161900 Sobic007G046000--Sobic009G161900 Sobic009G066900 Sobic009G066900 Sobic009G108700--Sobic009G066900 Sobic001G154500 Sobic001G154500 Sobic009G108700--Sobic001G154500 Sobic004G226600 Sobic004G226600 Sobic009G108700--Sobic004G226600 Sobic003G033700 Sobic003G033700 Sobic009G108700--Sobic003G033700 Sobic002G306000 Sobic002G306000 Sobic009G108700--Sobic002G306000 Sobic002G257200 Sobic002G257200 Sobic009G108700--Sobic002G257200 Sobic009G108700--Sobic001G333900 Sobic002G110300 Sobic002G110300 Sobic009G108700--Sobic002G110300 Sobic001G425800 Sobic001G425800 Sobic009G108700--Sobic001G425800 Sobic007G051600 Sobic007G051600 Sobic007G178401--Sobic007G051600 Sobic003G066900 Sobic003G066900 Sobic007G178401--Sobic003G066900 Sobic001G286000 Sobic001G286000 Sobic007G178401--Sobic001G286000 Sobic004G310600 Sobic004G310600 Sobic007G178401--Sobic004G310600 Sobic006G249200 Sobic006G249200 Sobic007G178401--Sobic006G249200 Sobic009G000700 Sobic009G000700 Sobic007G178401--Sobic009G000700 Sobic004G331300 Sobic004G331300 Sobic007G178401--Sobic004G331300 Sobic004G285100 Sobic004G285100 Sobic007G178401--Sobic004G285100 Sobic007G178401--Sobic007G046000 Sobic004G066500 Sobic004G066500 Sobic007G045900--Sobic004G066500 Sobic003G399500 Sobic003G399500 Sobic007G045900--Sobic003G399500 Sobic004G281700 Sobic004G281700 Sobic007G045900--Sobic004G281700 Sobic001G418500 Sobic001G418500 Sobic007G045900--Sobic001G418500 Sobic003G236200 Sobic003G236200 Sobic007G045900--Sobic003G236200 Sobic010G142900 Sobic010G142900 Sobic007G045900--Sobic010G142900 Sobic003G295600 Sobic003G295600 Sobic007G045900--Sobic003G295600 Sobic004G301800 Sobic004G301800 Sobic007G045900--Sobic004G301800 Sobic007G168100 Sobic007G168100 Sobic007G045900--Sobic007G168100 Sobic002G043500--Sobic002G110300 Sobic001G083800 Sobic001G083800 Sobic002G043500--Sobic001G083800 Sobic001G179900 Sobic001G179900 Sobic002G043500--Sobic001G179900 Sobic010G033700 Sobic010G033700 Sobic002G043500--Sobic010G033700 Sobic002G189700 Sobic002G189700 Sobic002G043500--Sobic002G189700 Sobic002G043500--Sobic001G333900 Sobic002G009900 Sobic002G009900 Sobic002G043500--Sobic002G009900 Sobic007G196900 Sobic007G196900 Sobic002G043500--Sobic007G196900 Sobic004G305200 Sobic004G305200 Sobic002G043500--Sobic004G305200 Sobic001G333900--Sobic009G161900 Sobic001G333900--Sobic002G043500 Sobic001G333900--Sobic009G108700 Sobic001G333900--Sobic007G196900 Sobic003G149800 Sobic003G149800 Sobic001G333900--Sobic003G149800 Sobic003G198200 Sobic003G198200 Sobic001G333900--Sobic003G198200 Sobic006G206800 Sobic006G206800 Sobic001G333900--Sobic006G206800 Sobic001G477700 Sobic001G477700 Sobic001G333900--Sobic001G477700 Sobic010G011900 Sobic010G011900 Sobic001G333900--Sobic010G011900 Sobic008G088839--Sobic010G011900 Sobic008G039401 Sobic008G039401 Sobic008G088839--Sobic008G039401 Sobic008G088839--Sobic009G161900 Sobic005G075800 Sobic005G075800 Sobic008G088839--Sobic005G075800 Sobic001G034500 Sobic001G034500 Sobic008G088839--Sobic001G034500 Sobic002G290100 Sobic002G290100 Sobic008G088839--Sobic002G290100 Sobic003G435400 Sobic003G435400 Sobic008G088839--Sobic003G435400 Sobic001G241600 Sobic001G241600 Sobic008G088839--Sobic001G241600 Sobic001G496900 Sobic001G496900 Sobic008G088839--Sobic001G496900 Sobic008G065400 Sobic008G065400 Sobic005G079700--Sobic008G065400 Sobic008G106400 Sobic008G106400 Sobic005G079700--Sobic008G106400 Sobic005G079700--Sobic006G249200 Sobic002G431200 Sobic002G431200 Sobic005G079700--Sobic002G431200 Sobic001G140200 Sobic001G140200 Sobic005G079700--Sobic001G140200 Sobic003G374500 Sobic003G374500 Sobic005G079700--Sobic003G374500 Sobic009G159300 Sobic009G159300 Sobic005G079700--Sobic009G159300 Sobic009G121750 Sobic009G121750 Sobic005G079700--Sobic009G121750 Sobic008G044750 Sobic008G044750 Sobic005G079700--Sobic008G044750 Sobic004G108501--Sobic008G039401 Sobic004G282500 Sobic004G282500 Sobic004G108501--Sobic004G282500 Sobic003G002700 Sobic003G002700 Sobic004G108501--Sobic003G002700 Sobic002G244700 Sobic002G244700 Sobic004G108501--Sobic002G244700 Sobic004G108501--Sobic008G088839 Sobic002G416150 Sobic002G416150 Sobic004G108501--Sobic002G416150 Sobic001G204700 Sobic001G204700 Sobic004G108501--Sobic001G204700 Sobic002G019750 Sobic002G019750 Sobic004G108501--Sobic002G019750 Sobic007G174900 Sobic007G174900 Sobic004G108501--Sobic007G174900 Sobic010G147600 Sobic010G147600 Sobic009G161900--Sobic010G147600 Sobic004G058600 Sobic004G058600 Sobic009G161900--Sobic004G058600 Sobic001G471000 Sobic001G471000 Sobic009G161900--Sobic001G471000 Sobic009G161900--Sobic001G333900 Sobic001G193500 Sobic001G193500 Sobic009G161900--Sobic001G193500 Sobic009G161900--Sobic004G066500 Sobic001G424400 Sobic001G424400 Sobic009G161900--Sobic001G424400 Sobic003G378000 Sobic003G378000 Sobic009G161900--Sobic003G378000 Sobic010G170000 Sobic010G170000 Sobic009G161900--Sobic010G170000
Octagon: transcription factors


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