Gene annotation
Transcriptome id Sobic.007G074500.1
Synonym Sb07g005930, POP2, HER1, GABA-T
Functional annotation aminotransferase, putative, expressed
UniProt C5YII6
Pfam PF00202
Panther DB PTHR11986 PTHR11986:SF90
NCBI CDD -
KEGG Orthology K16871; 4-aminobutyrate---pyruvate transaminase
Gene Ontology GO:0008483; transaminase activity


Orthologs (automatic annotation)
TAIR AT3G22200 : Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
RAP-DB (Rice) LOC_Os08g10510.1 : aminotransferase, putative, expressed
MaizeGDB (Corn) Zm00025a057021 , Zm00025a029939 , Zm00025a009804
Brachypodium KQJ95549 , KQK06911 , KQJ95550 , KQJ84581
Barley HORVU7Hr1G082330.16 , HORVU7Hr1G082330.10 , HORVU7Hr1G082330.5 , HORVU2Hr1G098880.10 , HORVU2Hr1G098880.13 , HORVU7Hr1G082330.6 , HORVU7Hr1G082330.19 , HORVU7Hr1G082330.18 , HORVU7Hr1G082330.11 , HORVU7Hr1G082330.13 , HORVU7Hr1G082330.15 , HORVU7Hr1G082330.14 , HORVU7Hr1G082330.17 , HORVU7Hr1G082330.9 , HORVU7Hr1G082330.8 , HORVU2Hr1G098880.11 , HORVU7Hr1G082330.4 , HORVU7Hr1G082330.7 , HORVU2Hr1G098880.12 , HORVU7Hr1G082330.1 , HORVU7Hr1G082330.3 , HORVU7Hr1G082330.2 , HORVU2Hr1G098880.9 , HORVU2Hr1G098880.5 , HORVU2Hr1G098880.4 , HORVU2Hr1G098880.7 , HORVU2Hr1G098880.6 , HORVU2Hr1G098880.1 , HORVU2Hr1G098880.3 , HORVU2Hr1G098880.2
Wheat TraesCS7A02G334200 , TraesCS7A02G334200 , TraesCS2B02G440400 , TraesCS7B02G246800 , TraesCS7B02G246800 , TraesCS2A02G421400 , TraesCS2D02G418400 , TraesCS2D02G418400 , TraesCS7D02G341900 , TraesCS7D02G341900
Populus -


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cDNA sequences
Sobic.007G074500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G193850 - -
2 Sobic.002G148300 - -
3 Sobic.008G080000 leucine-rich repeat family protein, putative, expressed -
4 Sobic.007G187900 OsFBX187 - F-box domain containing protein, expressed -
5 Sobic.004G332000 alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase, putative, expressed K00736: alpha-1,6-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
6 Sobic.001G154500 tentative name(PubMedID : 31536532)@nuclear transcription factor Y subunit, putative, expressed K08064: NFYA, nuclear transcription factor Y, alpha
7 Sobic.007G046000 OsTOP6A2 - Topoisomerase 6 subunit A homolog 2, expressed K10878: meiotic recombination protein SPO11
8 Sobic.001G401400 NUC189 domain containing protein, expressed K14546: UTP5, U3 small nucleolar RNA-associated protein 5
9 Sobic.001G340200 nuclear transcription factor Y subunit, putative, expressed K08064: NFYA, nuclear transcription factor Y, alpha
10 Sobic.005G122900 - -
11 Sobic.003G121800 CRAL/TRIO domain containing protein, expressed -
12 Sobic.006G126300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform, putative, expressed K00036: G6PD, glucose-6-phosphate 1-dehydrogenase
13 Sobic.009G229300 glycosyltransferase family 43 protein, putative, expressed -
14 Sobic.005G056600 CAMK_CAMK_like.43 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
15 Sobic.001G219400 DUF640 domain containing protein, putative, expressed -
16 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
17 Sobic.001G517200 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed -
18 Sobic.003G382500 serine/threonine-protein kinase RIO-like, putative, expressed K07179: RIO kinase 2
19 Sobic.004G036700 arginine N-methyltransferase 5, putative, expressed K02516: PRMT5, type II protein arginine methyltransferase
20 Sobic.009G010300 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family


Gene co-expression network
sample Sobic007G074500 Sobic007G074500 Sobic009G193850 Sobic009G193850 Sobic007G074500--Sobic009G193850 Sobic002G148300 Sobic002G148300 Sobic007G074500--Sobic002G148300 Sobic008G080000 Sobic008G080000 Sobic007G074500--Sobic008G080000 Sobic007G187900 Sobic007G187900 Sobic007G074500--Sobic007G187900 Sobic004G332000 Sobic004G332000 Sobic007G074500--Sobic004G332000 Sobic001G154500 Sobic001G154500 Sobic007G074500--Sobic001G154500 Sobic007G046000 Sobic007G046000 Sobic007G074500--Sobic007G046000 Sobic001G401400 Sobic001G401400 Sobic007G074500--Sobic001G401400 Sobic001G340200 Sobic001G340200 Sobic007G074500--Sobic001G340200 Sobic001G041200 Sobic001G041200 Sobic009G193850--Sobic001G041200 Sobic004G011000 Sobic004G011000 Sobic009G193850--Sobic004G011000 Sobic006G216000 Sobic006G216000 Sobic009G193850--Sobic006G216000 Sobic007G162800 Sobic007G162800 Sobic009G193850--Sobic007G162800 Sobic009G193850--Sobic002G148300 Sobic001G404200 Sobic001G404200 Sobic009G193850--Sobic001G404200 Sobic003G118400 Sobic003G118400 Sobic009G193850--Sobic003G118400 Sobic009G193850--Sobic008G080000 Sobic006G242300 Sobic006G242300 Sobic009G193850--Sobic006G242300 Sobic001G503400 Sobic001G503400 Sobic002G148300--Sobic001G503400 Sobic002G272600 Sobic002G272600 Sobic002G148300--Sobic002G272600 Sobic002G143900 Sobic002G143900 Sobic002G148300--Sobic002G143900 Sobic001G119700 Sobic001G119700 Sobic002G148300--Sobic001G119700 Sobic002G148300--Sobic007G162800 Sobic010G219100 Sobic010G219100 Sobic002G148300--Sobic010G219100 Sobic002G148300--Sobic009G193850 Sobic005G010500 Sobic005G010500 Sobic002G148300--Sobic005G010500 Sobic002G180000 Sobic002G180000 Sobic002G148300--Sobic002G180000 Sobic008G080000--Sobic009G193850 Sobic001G486000 Sobic001G486000 Sobic008G080000--Sobic001G486000 Sobic003G408300 Sobic003G408300 Sobic008G080000--Sobic003G408300 Sobic002G177500 Sobic002G177500 Sobic008G080000--Sobic002G177500 Sobic009G065200 Sobic009G065200 Sobic008G080000--Sobic009G065200 Sobic008G111700 Sobic008G111700 Sobic008G080000--Sobic008G111700 Sobic008G080000--Sobic002G148300 Sobic002G088700 Sobic002G088700 Sobic008G080000--Sobic002G088700 Sobic004G057800 Sobic004G057800 Sobic008G080000--Sobic004G057800 Sobic007G187900--Sobic003G408300 Sobic001G517200 Sobic001G517200 Sobic007G187900--Sobic001G517200 Sobic009G105900 Sobic009G105900 Sobic007G187900--Sobic009G105900 Sobic003G235000 Sobic003G235000 Sobic007G187900--Sobic003G235000 Sobic002G429400 Sobic002G429400 Sobic007G187900--Sobic002G429400 Sobic003G006400 Sobic003G006400 Sobic007G187900--Sobic003G006400 Sobic002G429700 Sobic002G429700 Sobic007G187900--Sobic002G429700 Sobic001G471000 Sobic001G471000 Sobic007G187900--Sobic001G471000 Sobic003G382500 Sobic003G382500 Sobic007G187900--Sobic003G382500 Sobic002G119800 Sobic002G119800 Sobic004G332000--Sobic002G119800 Sobic006G213601 Sobic006G213601 Sobic004G332000--Sobic006G213601 Sobic001G262900 Sobic001G262900 Sobic004G332000--Sobic001G262900 Sobic001G072200 Sobic001G072200 Sobic004G332000--Sobic001G072200 Sobic003G374500 Sobic003G374500 Sobic004G332000--Sobic003G374500 Sobic006G255100 Sobic006G255100 Sobic004G332000--Sobic006G255100 Sobic004G152601 Sobic004G152601 Sobic004G332000--Sobic004G152601 Sobic007G136700 Sobic007G136700 Sobic004G332000--Sobic007G136700 Sobic002G067100 Sobic002G067100 Sobic004G332000--Sobic002G067100 Sobic001G425800 Sobic001G425800 Sobic001G154500--Sobic001G425800 Sobic002G134600 Sobic002G134600 Sobic001G154500--Sobic002G134600 Sobic007G006900 Sobic007G006900 Sobic001G154500--Sobic007G006900 Sobic010G076300 Sobic010G076300 Sobic001G154500--Sobic010G076300 Sobic010G223700 Sobic010G223700 Sobic001G154500--Sobic010G223700 Sobic001G226700 Sobic001G226700 Sobic001G154500--Sobic001G226700 Sobic003G309200 Sobic003G309200 Sobic001G154500--Sobic003G309200 Sobic010G068500 Sobic010G068500 Sobic001G154500--Sobic010G068500 Sobic002G110300 Sobic002G110300 Sobic001G154500--Sobic002G110300 Sobic009G108700 Sobic009G108700 Sobic007G046000--Sobic009G108700 Sobic007G178401 Sobic007G178401 Sobic007G046000--Sobic007G178401 Sobic007G045900 Sobic007G045900 Sobic007G046000--Sobic007G045900 Sobic002G043500 Sobic002G043500 Sobic007G046000--Sobic002G043500 Sobic001G333900 Sobic001G333900 Sobic007G046000--Sobic001G333900 Sobic008G088839 Sobic008G088839 Sobic007G046000--Sobic008G088839 Sobic005G079700 Sobic005G079700 Sobic007G046000--Sobic005G079700 Sobic004G108501 Sobic004G108501 Sobic007G046000--Sobic004G108501 Sobic009G161900 Sobic009G161900 Sobic007G046000--Sobic009G161900 Sobic004G036700 Sobic004G036700 Sobic001G401400--Sobic004G036700 Sobic006G198600 Sobic006G198600 Sobic001G401400--Sobic006G198600 Sobic005G028100 Sobic005G028100 Sobic001G401400--Sobic005G028100 Sobic003G322200 Sobic003G322200 Sobic001G401400--Sobic003G322200 Sobic003G407800 Sobic003G407800 Sobic001G401400--Sobic003G407800 Sobic001G372800 Sobic001G372800 Sobic001G401400--Sobic001G372800 Sobic006G225400 Sobic006G225400 Sobic001G401400--Sobic006G225400 Sobic001G422500 Sobic001G422500 Sobic001G401400--Sobic001G422500 Sobic003G407600 Sobic003G407600 Sobic001G401400--Sobic003G407600 Sobic001G340200--Sobic001G486000 Sobic001G340200--Sobic008G080000 Sobic010G091300 Sobic010G091300 Sobic001G340200--Sobic010G091300 Sobic003G252900 Sobic003G252900 Sobic001G340200--Sobic003G252900 Sobic008G058700 Sobic008G058700 Sobic001G340200--Sobic008G058700 Sobic001G340200--Sobic003G408300 Sobic005G034000 Sobic005G034000 Sobic001G340200--Sobic005G034000 Sobic003G424800 Sobic003G424800 Sobic001G340200--Sobic003G424800 Sobic003G126800 Sobic003G126800 Sobic001G340200--Sobic003G126800
Octagon: transcription factors


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