Gene annotation
Transcriptome id Sobic.001G219400.1
Synonym LSH3, Sb01g019290
Functional annotation DUF640 domain containing protein, putative, expressed
UniProt A0A1B6QK86
Pfam PF04852
Panther DB PTHR31165 PTHR31165:SF15
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G07090 : Protein of unknown function (DUF640)
RAP-DB (Rice) LOC_Os02g56610.1 : DUF640 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a021109 , Zm00025a019050 , Zm00025a041930 , Zm00025a006596 , Zm00025a022541 , Zm00025a017626 , Zm00025a037663 , Zm00025a032852 , Zm00025a056514 , Zm00025a044984 , Zm00025a010702 , Zm00025a051795
Brachypodium PNT71068 , PNT71069 , KQK05799 , KQK00399 , KQK17088 , KQK17087 , KQJ83599 , KQK01266 , KQK21000 , KQJ97098 , KQK00400
Barley HORVU1Hr1G070480.1 , HORVU1Hr1G070480.2 , HORVU1Hr1G041240.2 , HORVU1Hr1G041240.1 , HORVU1Hr1G041240.6 , HORVU1Hr1G041240.7 , HORVU1Hr1G041240.4 , HORVU1Hr1G041240.5 , HORVU7Hr1G106960.7 , HORVU7Hr1G106960.6 , HORVU7Hr1G106960.5 , HORVU7Hr1G106960.4 , HORVU7Hr1G106960.3 , HORVU7Hr1G106960.2 , HORVU2Hr1G089190.1 , HORVU2Hr1G089190.3 , HORVU2Hr1G089190.2 , HORVU2Hr1G089190.5 , HORVU2Hr1G089190.4 , HORVU2Hr1G089190.7 , HORVU2Hr1G089190.6 , HORVU2Hr1G089190.9 , HORVU2Hr1G089190.8 , HORVU6Hr1G058340.2 , HORVU6Hr1G058340.3 , HORVU6Hr1G088790.1 , HORVU6Hr1G088790.2 , HORVU6Hr1G088790.3 , HORVU6Hr1G088790.4 , HORVU6Hr1G088790.5 , HORVU6Hr1G088790.6
Wheat TraesCS1D02G294600 , TraesCS1A02G154900
Populus -


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cDNA sequences
Sobic.001G219400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G219600 DUF640 domain containing protein, putative, expressed -
2 Sobic.004G343800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@anthranilate phosphoribosyltransferase, putative, expressed -
3 Sobic.009G013900 ankyrin repeat domain-containing protein 28, putative, expressed -
4 Sobic.007G074500 aminotransferase, putative, expressed K16871: 4-aminobutyrate---pyruvate transaminase
5 Sobic.003G278700 heavy metal-associated domain containing protein, expressed -
6 Sobic.001G342600 PDI, putative, expressed K17609: nucleoredoxin
7 Sobic.001G340200 nuclear transcription factor Y subunit, putative, expressed K08064: NFYA, nuclear transcription factor Y, alpha
8 Sobic.007G225300 2-nitropropane dioxygenase family, putative, expressed -
9 Sobic.004G120300 - -
10 Sobic.002G189700 nucleobase-ascorbate transporter, putative, expressed -
11 Sobic.009G099000 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
12 Sobic.008G109100 expressed protein -
13 Sobic.009G030200 homeobox protein knotted-1-like 6, putative, expressed -
14 Sobic.003G060600 expressed protein -
15 Sobic.009G229300 glycosyltransferase family 43 protein, putative, expressed -
16 Sobic.001G512000 cyclin-dependent kinase inhibitor, putative, expressed -
17 Sobic.005G079700 expressed protein -
18 Sobic.006G025300 white-brown complex homolog protein, putative, expressed -
19 Sobic.008G119400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RALFL4 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
20 Sobic.005G049600 OsWAK46 - OsWAK receptor-like protein kinase, expressed -


Gene co-expression network
sample Sobic001G219400 Sobic001G219400 Sobic004G219600 Sobic004G219600 Sobic001G219400--Sobic004G219600 Sobic004G343800 Sobic004G343800 Sobic001G219400--Sobic004G343800 Sobic009G013900 Sobic009G013900 Sobic001G219400--Sobic009G013900 Sobic007G074500 Sobic007G074500 Sobic001G219400--Sobic007G074500 Sobic003G278700 Sobic003G278700 Sobic001G219400--Sobic003G278700 Sobic001G342600 Sobic001G342600 Sobic001G219400--Sobic001G342600 Sobic001G340200 Sobic001G340200 Sobic001G219400--Sobic001G340200 Sobic007G225300 Sobic007G225300 Sobic001G219400--Sobic007G225300 Sobic004G120300 Sobic004G120300 Sobic001G219400--Sobic004G120300 Sobic009G167000 Sobic009G167000 Sobic004G219600--Sobic009G167000 Sobic004G300300 Sobic004G300300 Sobic004G219600--Sobic004G300300 Sobic002G188700 Sobic002G188700 Sobic004G219600--Sobic002G188700 Sobic003G082000 Sobic003G082000 Sobic004G219600--Sobic003G082000 Sobic001G075800 Sobic001G075800 Sobic004G219600--Sobic001G075800 Sobic004G268700 Sobic004G268700 Sobic004G219600--Sobic004G268700 Sobic007G101800 Sobic007G101800 Sobic004G219600--Sobic007G101800 Sobic009G099000 Sobic009G099000 Sobic004G219600--Sobic009G099000 Sobic004G162200 Sobic004G162200 Sobic004G219600--Sobic004G162200 Sobic003G281800 Sobic003G281800 Sobic004G343800--Sobic003G281800 Sobic004G309800 Sobic004G309800 Sobic004G343800--Sobic004G309800 Sobic004G343800--Sobic001G219400 Sobic010G175000 Sobic010G175000 Sobic004G343800--Sobic010G175000 Sobic008G119400 Sobic008G119400 Sobic004G343800--Sobic008G119400 Sobic007G187400 Sobic007G187400 Sobic004G343800--Sobic007G187400 Sobic001G290500 Sobic001G290500 Sobic004G343800--Sobic001G290500 Sobic001G194700 Sobic001G194700 Sobic004G343800--Sobic001G194700 Sobic003G002700 Sobic003G002700 Sobic004G343800--Sobic003G002700 Sobic005G164700 Sobic005G164700 Sobic009G013900--Sobic005G164700 Sobic001G230900 Sobic001G230900 Sobic009G013900--Sobic001G230900 Sobic009G026200 Sobic009G026200 Sobic009G013900--Sobic009G026200 Sobic001G040300 Sobic001G040300 Sobic009G013900--Sobic001G040300 Sobic008G136000 Sobic008G136000 Sobic009G013900--Sobic008G136000 Sobic009G213600 Sobic009G213600 Sobic009G013900--Sobic009G213600 Sobic009G013900--Sobic007G187400 Sobic010G060600 Sobic010G060600 Sobic009G013900--Sobic010G060600 Sobic008G133500 Sobic008G133500 Sobic009G013900--Sobic008G133500 Sobic009G193850 Sobic009G193850 Sobic007G074500--Sobic009G193850 Sobic002G148300 Sobic002G148300 Sobic007G074500--Sobic002G148300 Sobic008G080000 Sobic008G080000 Sobic007G074500--Sobic008G080000 Sobic007G187900 Sobic007G187900 Sobic007G074500--Sobic007G187900 Sobic004G332000 Sobic004G332000 Sobic007G074500--Sobic004G332000 Sobic001G154500 Sobic001G154500 Sobic007G074500--Sobic001G154500 Sobic007G046000 Sobic007G046000 Sobic007G074500--Sobic007G046000 Sobic001G401400 Sobic001G401400 Sobic007G074500--Sobic001G401400 Sobic007G074500--Sobic001G340200 Sobic003G278700--Sobic009G099000 Sobic001G157400 Sobic001G157400 Sobic003G278700--Sobic001G157400 Sobic001G460300 Sobic001G460300 Sobic003G278700--Sobic001G460300 Sobic001G050800 Sobic001G050800 Sobic003G278700--Sobic001G050800 Sobic005G231700 Sobic005G231700 Sobic003G278700--Sobic005G231700 Sobic009G030200 Sobic009G030200 Sobic003G278700--Sobic009G030200 Sobic010G272101 Sobic010G272101 Sobic003G278700--Sobic010G272101 Sobic001G063600 Sobic001G063600 Sobic003G278700--Sobic001G063600 Sobic003G227600 Sobic003G227600 Sobic003G278700--Sobic003G227600 Sobic006G025300 Sobic006G025300 Sobic001G342600--Sobic006G025300 Sobic007G178200 Sobic007G178200 Sobic001G342600--Sobic007G178200 Sobic006G191100 Sobic006G191100 Sobic001G342600--Sobic006G191100 Sobic003G056500 Sobic003G056500 Sobic001G342600--Sobic003G056500 Sobic001G342600--Sobic003G278700 Sobic005G094200 Sobic005G094200 Sobic001G342600--Sobic005G094200 Sobic006G267700 Sobic006G267700 Sobic001G342600--Sobic006G267700 Sobic002G359000 Sobic002G359000 Sobic001G342600--Sobic002G359000 Sobic002G306000 Sobic002G306000 Sobic001G342600--Sobic002G306000 Sobic001G486000 Sobic001G486000 Sobic001G340200--Sobic001G486000 Sobic001G340200--Sobic008G080000 Sobic010G091300 Sobic010G091300 Sobic001G340200--Sobic010G091300 Sobic003G252900 Sobic003G252900 Sobic001G340200--Sobic003G252900 Sobic008G058700 Sobic008G058700 Sobic001G340200--Sobic008G058700 Sobic003G408300 Sobic003G408300 Sobic001G340200--Sobic003G408300 Sobic005G034000 Sobic005G034000 Sobic001G340200--Sobic005G034000 Sobic003G424800 Sobic003G424800 Sobic001G340200--Sobic003G424800 Sobic003G126800 Sobic003G126800 Sobic001G340200--Sobic003G126800 Sobic003G353400 Sobic003G353400 Sobic007G225300--Sobic003G353400 Sobic005G195600 Sobic005G195600 Sobic007G225300--Sobic005G195600 Sobic003G052400 Sobic003G052400 Sobic007G225300--Sobic003G052400 Sobic004G337900 Sobic004G337900 Sobic007G225300--Sobic004G337900 Sobic007G148700 Sobic007G148700 Sobic007G225300--Sobic007G148700 Sobic009G229300 Sobic009G229300 Sobic007G225300--Sobic009G229300 Sobic009G182200 Sobic009G182200 Sobic007G225300--Sobic009G182200 Sobic003G319000 Sobic003G319000 Sobic007G225300--Sobic003G319000 Sobic001G237500 Sobic001G237500 Sobic007G225300--Sobic001G237500 Sobic002G075500 Sobic002G075500 Sobic004G120300--Sobic002G075500 Sobic008G109100 Sobic008G109100 Sobic004G120300--Sobic008G109100 Sobic001G436100 Sobic001G436100 Sobic004G120300--Sobic001G436100 Sobic001G099100 Sobic001G099100 Sobic004G120300--Sobic001G099100 Sobic004G051300 Sobic004G051300 Sobic004G120300--Sobic004G051300 Sobic001G313301 Sobic001G313301 Sobic004G120300--Sobic001G313301 Sobic004G006700 Sobic004G006700 Sobic004G120300--Sobic004G006700 Sobic004G120300--Sobic009G013900 Sobic002G332100 Sobic002G332100 Sobic004G120300--Sobic002G332100
Octagon: transcription factors


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