Gene annotation
Transcriptome id Sobic.001G342600.1
Synonym Sb01g032910
Functional annotation PDI, putative, expressed
UniProt H0I496 , C5WWQ2
Pfam PF07649 PF13905
Panther DB PTHR13871 PTHR13871:SF7
NCBI CDD KOG2501; Thioredoxin, nucleoredoxin and related proteins
KEGG Orthology K17609; nucleoredoxin
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G60420 : DC1 domain-containing protein
RAP-DB (Rice) LOC_Os03g29190.2 : PDI, putative, expressed
MaizeGDB (Corn) Zm00025a002800 , Zm00025a002792
Brachypodium KQK21335 , KQK15534
Barley HORVU2Hr1G103310.2 , HORVU2Hr1G103310.3 , HORVU2Hr1G103310.1 , HORVU2Hr1G103310.6 , HORVU2Hr1G103310.7 , HORVU2Hr1G103310.5 , HORVU2Hr1G103310.4
Wheat TraesCS2A02G466800 , TraesCS2D02G466800 , TraesCS2D02G466800 , TraesCS2B02G489600 , TraesCS2B02G489600 , TraesCS2B02G489600
Populus -


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cDNA sequences
Sobic.001G342600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G025300 white-brown complex homolog protein, putative, expressed -
2 Sobic.007G178200 ER lumen protein retaining receptor, putative, expressed -
3 Sobic.006G191100 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
4 Sobic.003G056500 staphylococcal nuclease homologue, putative, expressed -
5 Sobic.003G278700 heavy metal-associated domain containing protein, expressed -
6 Sobic.005G094200 resistance protein, putative, expressed -
7 Sobic.006G267700 fiber protein Fb34, putative, expressed -
8 Sobic.002G359000 formin, putative, expressed -
9 Sobic.002G306000 calmodulin-binding transcription activator 5, putative, expressed -
10 Sobic.002G281700 eukaryotic aspartyl protease domain containing protein, expressed -
11 Sobic.001G110900 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
12 Sobic.004G337900 ENTH domain containing protein, expressed K12471: epsin
13 Sobic.002G292600 phytoene synthase(PubMedID : 22672222)@carotenoid biosynthesi(PubMedID : 18162592)@PSY3 expression influences root carotenogenesis and defines a potential bottleneck upstream of NCED(PubMedID : 18162592)@phytoene synthase, chloroplast precursor, putative, expressed K02291: 15-cis-phytoene synthase
14 Sobic.001G157400 Class III HD ZIP family protein(PubMedID : 23915383)@START domain containing protein, expressed K09338: homeobox-leucine zipper protein
15 Sobic.009G195300 DUF803 domain containing, putative, expressed -
16 Sobic.010G063100 - -
17 Sobic.003G198150 - -
18 Sobic.002G076866 - -
19 Sobic.010G272101 - -
20 Sobic.009G099000 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4


Gene co-expression network
sample Sobic001G342600 Sobic001G342600 Sobic006G025300 Sobic006G025300 Sobic001G342600--Sobic006G025300 Sobic007G178200 Sobic007G178200 Sobic001G342600--Sobic007G178200 Sobic006G191100 Sobic006G191100 Sobic001G342600--Sobic006G191100 Sobic003G056500 Sobic003G056500 Sobic001G342600--Sobic003G056500 Sobic003G278700 Sobic003G278700 Sobic001G342600--Sobic003G278700 Sobic005G094200 Sobic005G094200 Sobic001G342600--Sobic005G094200 Sobic006G267700 Sobic006G267700 Sobic001G342600--Sobic006G267700 Sobic002G359000 Sobic002G359000 Sobic001G342600--Sobic002G359000 Sobic002G306000 Sobic002G306000 Sobic001G342600--Sobic002G306000 Sobic006G025300--Sobic001G342600 Sobic009G195300 Sobic009G195300 Sobic006G025300--Sobic009G195300 Sobic003G424400 Sobic003G424400 Sobic006G025300--Sobic003G424400 Sobic010G068500 Sobic010G068500 Sobic006G025300--Sobic010G068500 Sobic001G312900 Sobic001G312900 Sobic006G025300--Sobic001G312900 Sobic006G052500 Sobic006G052500 Sobic006G025300--Sobic006G052500 Sobic001G110900 Sobic001G110900 Sobic006G025300--Sobic001G110900 Sobic003G422700 Sobic003G422700 Sobic006G025300--Sobic003G422700 Sobic003G272400 Sobic003G272400 Sobic006G025300--Sobic003G272400 Sobic003G392200 Sobic003G392200 Sobic007G178200--Sobic003G392200 Sobic001G416600 Sobic001G416600 Sobic007G178200--Sobic001G416600 Sobic004G025000 Sobic004G025000 Sobic007G178200--Sobic004G025000 Sobic008G016900 Sobic008G016900 Sobic007G178200--Sobic008G016900 Sobic003G361300 Sobic003G361300 Sobic007G178200--Sobic003G361300 Sobic009G134600 Sobic009G134600 Sobic007G178200--Sobic009G134600 Sobic004G245900 Sobic004G245900 Sobic007G178200--Sobic004G245900 Sobic002G330300 Sobic002G330300 Sobic007G178200--Sobic002G330300 Sobic010G071700 Sobic010G071700 Sobic007G178200--Sobic010G071700 Sobic005G195600 Sobic005G195600 Sobic006G191100--Sobic005G195600 Sobic006G087900 Sobic006G087900 Sobic006G191100--Sobic006G087900 Sobic006G076201 Sobic006G076201 Sobic006G191100--Sobic006G076201 Sobic002G362900 Sobic002G362900 Sobic006G191100--Sobic002G362900 Sobic010G069900 Sobic010G069900 Sobic006G191100--Sobic010G069900 Sobic003G016600 Sobic003G016600 Sobic006G191100--Sobic003G016600 Sobic003G227700 Sobic003G227700 Sobic006G191100--Sobic003G227700 Sobic001G113700 Sobic001G113700 Sobic006G191100--Sobic001G113700 Sobic007G221100 Sobic007G221100 Sobic006G191100--Sobic007G221100 Sobic009G159900 Sobic009G159900 Sobic003G056500--Sobic009G159900 Sobic003G056500--Sobic009G134600 Sobic004G273200 Sobic004G273200 Sobic003G056500--Sobic004G273200 Sobic006G218700 Sobic006G218700 Sobic003G056500--Sobic006G218700 Sobic002G141000 Sobic002G141000 Sobic003G056500--Sobic002G141000 Sobic003G036000 Sobic003G036000 Sobic003G056500--Sobic003G036000 Sobic009G230700 Sobic009G230700 Sobic003G056500--Sobic009G230700 Sobic003G056500--Sobic001G342600 Sobic003G424500 Sobic003G424500 Sobic003G056500--Sobic003G424500 Sobic009G099000 Sobic009G099000 Sobic003G278700--Sobic009G099000 Sobic001G157400 Sobic001G157400 Sobic003G278700--Sobic001G157400 Sobic001G460300 Sobic001G460300 Sobic003G278700--Sobic001G460300 Sobic001G050800 Sobic001G050800 Sobic003G278700--Sobic001G050800 Sobic005G231700 Sobic005G231700 Sobic003G278700--Sobic005G231700 Sobic009G030200 Sobic009G030200 Sobic003G278700--Sobic009G030200 Sobic010G272101 Sobic010G272101 Sobic003G278700--Sobic010G272101 Sobic001G063600 Sobic001G063600 Sobic003G278700--Sobic001G063600 Sobic003G227600 Sobic003G227600 Sobic003G278700--Sobic003G227600 Sobic008G065400 Sobic008G065400 Sobic005G094200--Sobic008G065400 Sobic003G266700 Sobic003G266700 Sobic005G094200--Sobic003G266700 Sobic004G200866 Sobic004G200866 Sobic005G094200--Sobic004G200866 Sobic001G278600 Sobic001G278600 Sobic005G094200--Sobic001G278600 Sobic008G043900 Sobic008G043900 Sobic005G094200--Sobic008G043900 Sobic005G079700 Sobic005G079700 Sobic005G094200--Sobic005G079700 Sobic007G064250 Sobic007G064250 Sobic005G094200--Sobic007G064250 Sobic003G374500 Sobic003G374500 Sobic005G094200--Sobic003G374500 Sobic008G106400 Sobic008G106400 Sobic005G094200--Sobic008G106400 Sobic002G270700 Sobic002G270700 Sobic006G267700--Sobic002G270700 Sobic010G050900 Sobic010G050900 Sobic006G267700--Sobic010G050900 Sobic001G217000 Sobic001G217000 Sobic006G267700--Sobic001G217000 Sobic004G268700 Sobic004G268700 Sobic006G267700--Sobic004G268700 Sobic002G379400 Sobic002G379400 Sobic006G267700--Sobic002G379400 Sobic006G267700--Sobic003G392200 Sobic007G011000 Sobic007G011000 Sobic006G267700--Sobic007G011000 Sobic002G210300 Sobic002G210300 Sobic006G267700--Sobic002G210300 Sobic006G267700--Sobic004G025000 Sobic001G045600 Sobic001G045600 Sobic002G359000--Sobic001G045600 Sobic002G359000--Sobic001G342600 Sobic002G359000--Sobic001G110900 Sobic006G220300 Sobic006G220300 Sobic002G359000--Sobic006G220300 Sobic002G359000--Sobic006G025300 Sobic003G198150 Sobic003G198150 Sobic002G359000--Sobic003G198150 Sobic010G092600 Sobic010G092600 Sobic002G359000--Sobic010G092600 Sobic003G035100 Sobic003G035100 Sobic002G359000--Sobic003G035100 Sobic007G152800 Sobic007G152800 Sobic002G359000--Sobic007G152800 Sobic004G353600 Sobic004G353600 Sobic002G306000--Sobic004G353600 Sobic002G306000--Sobic003G272400 Sobic003G281900 Sobic003G281900 Sobic002G306000--Sobic003G281900 Sobic003G407200 Sobic003G407200 Sobic002G306000--Sobic003G407200 Sobic007G196900 Sobic007G196900 Sobic002G306000--Sobic007G196900 Sobic010G140500 Sobic010G140500 Sobic002G306000--Sobic010G140500 Sobic001G015800 Sobic001G015800 Sobic002G306000--Sobic001G015800 Sobic001G096000 Sobic001G096000 Sobic002G306000--Sobic001G096000 Sobic009G219000 Sobic009G219000 Sobic002G306000--Sobic009G219000
Octagon: transcription factors


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