Gene annotation
Transcriptome id Sobic.005G056600.1,Sobic.005G056600.2
Synonym ATCPK4, Sb05g004610, CPK4
Functional annotation CAMK_CAMK_like.43 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
UniProt C5Y5R0
Pfam PF13499 PF07714
Panther DB PTHR24349 PTHR24349:SF132
NCBI CDD KOG0032; Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily
KEGG Orthology K13412; calcium-dependent protein kinase
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT4G09570 : calcium-dependent protein kinase 4
RAP-DB (Rice) LOC_Os11g07040.1 : CAMK_CAMK_like.43 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
MaizeGDB (Corn) Zm00025a016143 , Zm00025a039723 , Zm00025a024833 , Zm00025a025734 , Zm00025a033981 , Zm00025a008491 , Zm00025a012860 , Zm00025a033617 , Zm00025a016612 , Zm00025a032700 , Zm00025a008488 , Zm00025a054043 , Zm00025a056693 , Zm00025a010059
Brachypodium PNT69746 , KQK10428 , KQJ91880 , KQK12833 , KQJ89241 , KQJ91801 , KQK00812 , PNT68518
Barley HORVU6Hr1G066470.9 , HORVU6Hr1G066470.8 , HORVU6Hr1G066470.5 , HORVU6Hr1G066470.4 , HORVU6Hr1G066470.1 , HORVU6Hr1G066470.2 , HORVU4Hr1G026640.1 , HORVU4Hr1G026640.4 , HORVU4Hr1G026640.5 , HORVU6Hr1G066470.11 , HORVU6Hr1G066470.10 , HORVU6Hr1G066470.13 , HORVU6Hr1G066470.14 , HORVU6Hr1G066470.17 , HORVU6Hr1G066470.16 , HORVU2Hr1G058530.4 , HORVU2Hr1G058530.1 , HORVU2Hr1G058530.3 , HORVU2Hr1G058530.2 , HORVU7Hr1G056060.1 , HORVU7Hr1G056060.3 , HORVU7Hr1G056060.5 , HORVU7Hr1G056060.2 , HORVU7Hr1G056060.12 , HORVU7Hr1G056060.10 , HORVU7Hr1G056060.11 , HORVU4Hr1G004540.9 , HORVU4Hr1G004540.8 , HORVU4Hr1G004540.3 , HORVU4Hr1G004540.1 , HORVU4Hr1G004540.19 , HORVU4Hr1G004540.18 , HORVU4Hr1G004540.10 , HORVU4Hr1G004540.17 , HORVU7Hr1G056060.8 , HORVU7Hr1G056060.9 , HORVU7Hr1G056060.4 , HORVU7Hr1G056060.6 , HORVU7Hr1G056060.7 , HORVU6Hr1G066470.15 , HORVU5Hr1G032550.2 , HORVU5Hr1G032550.3 , HORVU5Hr1G032550.4 , HORVU5Hr1G032550.5 , HORVU4Hr1G004540.20 , HORVU4Hr1G019530.8 , HORVU4Hr1G019530.4 , HORVU4Hr1G019530.5 , HORVU4Hr1G019530.6 , HORVU4Hr1G019530.7 , HORVU4Hr1G019530.1 , HORVU4Hr1G019530.2 , HORVU4Hr1G019530.3 , HORVU5Hr1G044550.1 , HORVU5Hr1G044550.3 , HORVU5Hr1G044550.2
Wheat TraesCS4A02G187900 , TraesCS4D02G125500 , TraesCS7B02G165200 , TraesCS5D02G153800 , TraesCS2D02G456400 , TraesCS5A02G107900 , TraesCS5A02G107900 , TraesCS5A02G107900 , TraesCS5A02G107900 , TraesCS4B02G030100 , TraesCS6B02G467300 , TraesCS6D02G404800 , TraesCS4B02G030100 , TraesCS4B02G109800 , TraesCS6B02G288600 , TraesCS3D02G345500 , TraesCS5D02G122800 , TraesCS7A02G267000 , TraesCS4D02G107200 , TraesCS6A02G261200 , TraesCS4A02G206200 , TraesCS4A02G206200 , TraesCS5B02G115400 , TraesCS5B02G115400 , TraesCS5D02G122800 , TraesCS2A02G456100 , TraesCS6D02G242000 , TraesCS6D02G242000 , TraesCS2B02G478100 , TraesCS6A02G421000 , TraesCS4B02G109800 , TraesCS4B02G130300 , TraesCS5D02G122800 , TraesCS3B02G383800 , TraesCS5D02G122800 , TraesCS5A02G138300 , TraesCS7D02G267700
Populus -


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cDNA sequences
Sobic.005G056600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G153000 expressed protein -
2 Sobic.007G197400 pentatricopeptide, putative, expressed -
3 Sobic.009G056300 PHD finger protein, putative, expressed -
4 Sobic.009G193850 - -
5 Sobic.003G330200 cupin, RmlC-type, putative, expressed -
6 Sobic.006G071814 - -
7 Sobic.004G312100 HYS1, putative, expressed -
8 Sobic.006G180700 SNF2 family N-terminal domain containing protein, expressed K14439: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1
9 Sobic.005G155100 OsWAK98 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed -
10 Sobic.002G244700 cytosolic phospholipase A2 beta, putative, expressed K19219: peptidyl-lysine (3S)-dioxygenase / protease
11 Sobic.004G358900 Sec1 family transport protein, putative, expressed -
12 Sobic.003G361400 nsp1-like C-terminal region family protein, expressed K14306: NUP62, nuclear pore complex protein Nup62
13 Sobic.007G219200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
14 Sobic.003G125100 uncharacterized Cys-rich domain containing protein, putative, expressed -
15 Sobic.008G080000 leucine-rich repeat family protein, putative, expressed -
16 Sobic.007G010900 esterase, putative, expressed -
17 Sobic.002G148300 - -
18 Sobic.004G180500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
19 Sobic.007G074500 aminotransferase, putative, expressed K16871: 4-aminobutyrate---pyruvate transaminase
20 Sobic.009G065200 zinc finger family protein, putative, expressed -


Gene co-expression network
sample Sobic005G056600 Sobic005G056600 Sobic004G153000 Sobic004G153000 Sobic005G056600--Sobic004G153000 Sobic007G197400 Sobic007G197400 Sobic005G056600--Sobic007G197400 Sobic009G056300 Sobic009G056300 Sobic005G056600--Sobic009G056300 Sobic009G193850 Sobic009G193850 Sobic005G056600--Sobic009G193850 Sobic003G330200 Sobic003G330200 Sobic005G056600--Sobic003G330200 Sobic006G071814 Sobic006G071814 Sobic005G056600--Sobic006G071814 Sobic004G312100 Sobic004G312100 Sobic005G056600--Sobic004G312100 Sobic006G180700 Sobic006G180700 Sobic005G056600--Sobic006G180700 Sobic005G155100 Sobic005G155100 Sobic005G056600--Sobic005G155100 Sobic003G348200 Sobic003G348200 Sobic004G153000--Sobic003G348200 Sobic007G003100 Sobic007G003100 Sobic004G153000--Sobic007G003100 Sobic003G109200 Sobic003G109200 Sobic004G153000--Sobic003G109200 Sobic004G358900 Sobic004G358900 Sobic004G153000--Sobic004G358900 Sobic010G277000 Sobic010G277000 Sobic004G153000--Sobic010G277000 Sobic003G125100 Sobic003G125100 Sobic004G153000--Sobic003G125100 Sobic001G107300 Sobic001G107300 Sobic004G153000--Sobic001G107300 Sobic002G087000 Sobic002G087000 Sobic004G153000--Sobic002G087000 Sobic001G205900 Sobic001G205900 Sobic004G153000--Sobic001G205900 Sobic003G085600 Sobic003G085600 Sobic007G197400--Sobic003G085600 Sobic008G056900 Sobic008G056900 Sobic007G197400--Sobic008G056900 Sobic002G408600 Sobic002G408600 Sobic007G197400--Sobic002G408600 Sobic001G485600 Sobic001G485600 Sobic007G197400--Sobic001G485600 Sobic008G098600 Sobic008G098600 Sobic007G197400--Sobic008G098600 Sobic007G197400--Sobic006G180700 Sobic010G278600 Sobic010G278600 Sobic007G197400--Sobic010G278600 Sobic009G093400 Sobic009G093400 Sobic007G197400--Sobic009G093400 Sobic004G089500 Sobic004G089500 Sobic007G197400--Sobic004G089500 Sobic008G125000 Sobic008G125000 Sobic009G056300--Sobic008G125000 Sobic004G206300 Sobic004G206300 Sobic009G056300--Sobic004G206300 Sobic002G224700 Sobic002G224700 Sobic009G056300--Sobic002G224700 Sobic009G194300 Sobic009G194300 Sobic009G056300--Sobic009G194300 Sobic001G041200 Sobic001G041200 Sobic009G056300--Sobic001G041200 Sobic001G080000 Sobic001G080000 Sobic009G056300--Sobic001G080000 Sobic004G027000 Sobic004G027000 Sobic009G056300--Sobic004G027000 Sobic002G394800 Sobic002G394800 Sobic009G056300--Sobic002G394800 Sobic001G152000 Sobic001G152000 Sobic009G056300--Sobic001G152000 Sobic009G193850--Sobic001G041200 Sobic004G011000 Sobic004G011000 Sobic009G193850--Sobic004G011000 Sobic006G216000 Sobic006G216000 Sobic009G193850--Sobic006G216000 Sobic007G162800 Sobic007G162800 Sobic009G193850--Sobic007G162800 Sobic002G148300 Sobic002G148300 Sobic009G193850--Sobic002G148300 Sobic001G404200 Sobic001G404200 Sobic009G193850--Sobic001G404200 Sobic003G118400 Sobic003G118400 Sobic009G193850--Sobic003G118400 Sobic008G080000 Sobic008G080000 Sobic009G193850--Sobic008G080000 Sobic006G242300 Sobic006G242300 Sobic009G193850--Sobic006G242300 Sobic001G311833 Sobic001G311833 Sobic003G330200--Sobic001G311833 Sobic005G178700 Sobic005G178700 Sobic003G330200--Sobic005G178700 Sobic001G370300 Sobic001G370300 Sobic003G330200--Sobic001G370300 Sobic006G126200 Sobic006G126200 Sobic003G330200--Sobic006G126200 Sobic010G048900 Sobic010G048900 Sobic003G330200--Sobic010G048900 Sobic003G330200--Sobic009G193850 Sobic003G283300 Sobic003G283300 Sobic003G330200--Sobic003G283300 Sobic003G330200--Sobic001G107300 Sobic001G106900 Sobic001G106900 Sobic003G330200--Sobic001G106900 Sobic006G011000 Sobic006G011000 Sobic006G071814--Sobic006G011000 Sobic001G249700 Sobic001G249700 Sobic006G071814--Sobic001G249700 Sobic001G218800 Sobic001G218800 Sobic006G071814--Sobic001G218800 Sobic001G147100 Sobic001G147100 Sobic006G071814--Sobic001G147100 Sobic006G183000 Sobic006G183000 Sobic006G071814--Sobic006G183000 Sobic004G016300 Sobic004G016300 Sobic006G071814--Sobic004G016300 Sobic009G201800 Sobic009G201800 Sobic006G071814--Sobic009G201800 Sobic006G071814--Sobic008G080000 Sobic006G207500 Sobic006G207500 Sobic006G071814--Sobic006G207500 Sobic004G312100--Sobic006G180700 Sobic001G088900 Sobic001G088900 Sobic004G312100--Sobic001G088900 Sobic001G334100 Sobic001G334100 Sobic004G312100--Sobic001G334100 Sobic003G360300 Sobic003G360300 Sobic004G312100--Sobic003G360300 Sobic006G091000 Sobic006G091000 Sobic004G312100--Sobic006G091000 Sobic001G034500 Sobic001G034500 Sobic004G312100--Sobic001G034500 Sobic006G268300 Sobic006G268300 Sobic004G312100--Sobic006G268300 Sobic003G259600 Sobic003G259600 Sobic004G312100--Sobic003G259600 Sobic001G413800 Sobic001G413800 Sobic004G312100--Sobic001G413800 Sobic009G074700 Sobic009G074700 Sobic006G180700--Sobic009G074700 Sobic001G085700 Sobic001G085700 Sobic006G180700--Sobic001G085700 Sobic006G138000 Sobic006G138000 Sobic006G180700--Sobic006G138000 Sobic009G040800 Sobic009G040800 Sobic006G180700--Sobic009G040800 Sobic009G000400 Sobic009G000400 Sobic006G180700--Sobic009G000400 Sobic001G335900 Sobic001G335900 Sobic006G180700--Sobic001G335900 Sobic009G045200 Sobic009G045200 Sobic006G180700--Sobic009G045200 Sobic006G180700--Sobic006G091000 Sobic005G040900 Sobic005G040900 Sobic006G180700--Sobic005G040900 Sobic001G471000 Sobic001G471000 Sobic005G155100--Sobic001G471000 Sobic004G207900 Sobic004G207900 Sobic005G155100--Sobic004G207900 Sobic005G155100--Sobic004G358900 Sobic003G050900 Sobic003G050900 Sobic005G155100--Sobic003G050900 Sobic001G467100 Sobic001G467100 Sobic005G155100--Sobic001G467100 Sobic008G145100 Sobic008G145100 Sobic005G155100--Sobic008G145100 Sobic004G025300 Sobic004G025300 Sobic005G155100--Sobic004G025300 Sobic002G357900 Sobic002G357900 Sobic005G155100--Sobic002G357900 Sobic004G208500 Sobic004G208500 Sobic005G155100--Sobic004G208500
Octagon: transcription factors


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