Gene annotation
Transcriptome id Sobic.007G178401.2,Sobic.007G178401.1
Synonym -
Functional annotation -
UniProt A0A1Z5RAG8
Pfam PF03947
Panther DB PTHR13691
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome GO:0005622intracellular


Orthologs (automatic annotation)
TAIR AT2G44065 : Ribosomal protein L2 family
RAP-DB (Rice) LOC_Os12g38000.1 : 60S ribosomal protein L8, putative, expressed
MaizeGDB (Corn) Zm00025a007518 , Zm00025a031257
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G051600 - -
2 Sobic.003G066900 expressed protein -
3 Sobic.001G286000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
4 Sobic.004G310600 Not investigated(PubMedID : 23766026)@transcription factor(PubMedID : 30367619)@AP2 domain containing protein, expressed -
5 Sobic.006G249200 expressed protein -
6 Sobic.009G000700 Sorghum CYP722B is not involved in the production of 5-deoxystrigol or orobanchol(PubMedID : 34525227)@cytochrome P450, putative, expressed -
7 Sobic.004G331300 AP2 domain containing protein, expressed -
8 Sobic.004G285100 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17794: mitochondrial import inner membrane translocase subunit TIM23
9 Sobic.007G046000 OsTOP6A2 - Topoisomerase 6 subunit A homolog 2, expressed K10878: meiotic recombination protein SPO11
10 Sobic.004G257350 - -
11 Sobic.003G367350 - -
12 Sobic.007G089533 - -
13 Sobic.006G267900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
14 Sobic.003G078501 - -
15 Sobic.003G233900 - -
16 Sobic.004G155150 - -
17 Sobic.010G006700 auxin-induced protein 5NG4, putative, expressed -
18 Sobic.010G114800 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@cyclin-dependent kinase G-1, putative, expressed K08818: cell division cycle 2-like
19 Sobic.008G044750 - -
20 Sobic.001G159850 - -


Gene co-expression network
sample Sobic007G178401 Sobic007G178401 Sobic007G051600 Sobic007G051600 Sobic007G178401--Sobic007G051600 Sobic003G066900 Sobic003G066900 Sobic007G178401--Sobic003G066900 Sobic001G286000 Sobic001G286000 Sobic007G178401--Sobic001G286000 Sobic004G310600 Sobic004G310600 Sobic007G178401--Sobic004G310600 Sobic006G249200 Sobic006G249200 Sobic007G178401--Sobic006G249200 Sobic009G000700 Sobic009G000700 Sobic007G178401--Sobic009G000700 Sobic004G331300 Sobic004G331300 Sobic007G178401--Sobic004G331300 Sobic004G285100 Sobic004G285100 Sobic007G178401--Sobic004G285100 Sobic007G046000 Sobic007G046000 Sobic007G178401--Sobic007G046000 Sobic007G051600--Sobic004G331300 Sobic007G051600--Sobic009G000700 Sobic007G051600--Sobic004G310600 Sobic001G159850 Sobic001G159850 Sobic007G051600--Sobic001G159850 Sobic003G233900 Sobic003G233900 Sobic003G066900--Sobic003G233900 Sobic008G044750 Sobic008G044750 Sobic003G066900--Sobic008G044750 Sobic009G128300 Sobic009G128300 Sobic003G066900--Sobic009G128300 Sobic003G066900--Sobic009G000700 Sobic003G066900--Sobic004G310600 Sobic003G066900--Sobic004G285100 Sobic001G509400 Sobic001G509400 Sobic003G066900--Sobic001G509400 Sobic004G155150 Sobic004G155150 Sobic003G066900--Sobic004G155150 Sobic004G257350 Sobic004G257350 Sobic003G066900--Sobic004G257350 Sobic001G286000--Sobic009G000700 Sobic001G286000--Sobic004G310600 Sobic001G286000--Sobic004G155150 Sobic001G286000--Sobic007G051600 Sobic009G201500 Sobic009G201500 Sobic001G286000--Sobic009G201500 Sobic006G267900 Sobic006G267900 Sobic001G286000--Sobic006G267900 Sobic001G125100 Sobic001G125100 Sobic001G286000--Sobic001G125100 Sobic003G078501 Sobic003G078501 Sobic001G286000--Sobic003G078501 Sobic010G220400 Sobic010G220400 Sobic001G286000--Sobic010G220400 Sobic004G310600--Sobic009G000700 Sobic004G310600--Sobic003G078501 Sobic010G006700 Sobic010G006700 Sobic004G310600--Sobic010G006700 Sobic003G373150 Sobic003G373150 Sobic004G310600--Sobic003G373150 Sobic004G310600--Sobic004G155150 Sobic004G310600--Sobic004G331300 Sobic004G310600--Sobic003G233900 Sobic004G310600--Sobic004G257350 Sobic004G310600--Sobic006G267900 Sobic006G249200--Sobic008G044750 Sobic005G079700 Sobic005G079700 Sobic006G249200--Sobic005G079700 Sobic006G249200--Sobic001G509400 Sobic006G249200--Sobic003G066900 Sobic009G121750 Sobic009G121750 Sobic006G249200--Sobic009G121750 Sobic008G106400 Sobic008G106400 Sobic006G249200--Sobic008G106400 Sobic002G431200 Sobic002G431200 Sobic006G249200--Sobic002G431200 Sobic006G249200--Sobic003G233900 Sobic002G171400 Sobic002G171400 Sobic006G249200--Sobic002G171400 Sobic009G000700--Sobic004G310600 Sobic009G000700--Sobic003G078501 Sobic009G000700--Sobic004G155150 Sobic009G000700--Sobic010G006700 Sobic009G000700--Sobic004G331300 Sobic009G000700--Sobic003G233900 Sobic009G000700--Sobic003G373150 Sobic009G000700--Sobic006G267900 Sobic009G000700--Sobic001G125100 Sobic004G331300--Sobic001G159850 Sobic004G285100--Sobic003G233900 Sobic003G040800 Sobic003G040800 Sobic004G285100--Sobic003G040800 Sobic004G285100--Sobic004G310600 Sobic004G285100--Sobic009G000700 Sobic001G106000 Sobic001G106000 Sobic004G285100--Sobic001G106000 Sobic005G087800 Sobic005G087800 Sobic004G285100--Sobic005G087800 Sobic004G285100--Sobic009G128300 Sobic003G227600 Sobic003G227600 Sobic004G285100--Sobic003G227600 Sobic004G285100--Sobic004G155150 Sobic009G108700 Sobic009G108700 Sobic007G046000--Sobic009G108700 Sobic007G046000--Sobic007G178401 Sobic007G045900 Sobic007G045900 Sobic007G046000--Sobic007G045900 Sobic002G043500 Sobic002G043500 Sobic007G046000--Sobic002G043500 Sobic001G333900 Sobic001G333900 Sobic007G046000--Sobic001G333900 Sobic008G088839 Sobic008G088839 Sobic007G046000--Sobic008G088839 Sobic007G046000--Sobic005G079700 Sobic004G108501 Sobic004G108501 Sobic007G046000--Sobic004G108501 Sobic009G161900 Sobic009G161900 Sobic007G046000--Sobic009G161900
Octagon: transcription factors


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