Gene annotation
Transcriptome id Sobic.001G421900.3,Sobic.001G421900.4,Sobic.001G421900.1
Synonym Sb01g039670, SCL14, ATGRAS2, GRAS2
Functional annotation SCARECROW, putative, expressed
UniProt A0A1Z5SAG3
Pfam PF03514
Panther DB PTHR31636 PTHR31636:SF14
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G37650 : GRAS family transcription factor
RAP-DB (Rice) LOC_Os03g48450.2,LOC_Os03g48450.1 : SCARECROW, putative, expressed
MaizeGDB (Corn) Zm00025a001823 , Zm00025a052763
Brachypodium KQJ92434 , KQJ92435
Barley HORVU5Hr1G045020.8 , HORVU5Hr1G045020.2 , HORVU5Hr1G045020.3 , HORVU5Hr1G045020.1 , HORVU5Hr1G045020.6 , HORVU5Hr1G045020.7 , HORVU5Hr1G045020.4 , HORVU5Hr1G045020.5 , HORVU5Hr1G045020.9 , HORVU5Hr1G045020.10 , HORVU5Hr1G045020.11 , HORVU5Hr1G045020.12 , HORVU5Hr1G045020.13 , HORVU5Hr1G045020.14 , HORVU5Hr1G045020.15 , HORVU5Hr1G045020.16 , HORVU5Hr1G045020.17 , HORVU5Hr1G045020.18 , HORVU5Hr1G045020.19 , HORVU5Hr1G045020.25 , HORVU5Hr1G045020.24 , HORVU5Hr1G045020.27 , HORVU5Hr1G045020.26 , HORVU5Hr1G045020.21 , HORVU5Hr1G045020.20 , HORVU5Hr1G045020.23 , HORVU5Hr1G045020.22 , HORVU5Hr1G045020.29 , HORVU5Hr1G045020.28
Wheat TraesCS5B02G138100 , TraesCS5A02G139000 , TraesCS5A02G139000 , TraesCS5D02G152700
Populus PNT56354


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cDNA sequences
Sobic.001G421900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G146800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@spotted leaf 11, putative, expressed -
2 Sobic.001G297500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
3 Sobic.001G522600 PHD-finger domain containing protein, putative, expressed -
4 Sobic.001G010300 WD domain, G-beta repeat domain containing protein, expressed -
5 Sobic.002G126500 RNA recognition motif containing protein, expressed -
6 Sobic.010G249100 ZOS8-11 - C2H2 zinc finger protein, expressed -
7 Sobic.001G472600 gibberellin response modulator protein, putative, expressed -
8 Sobic.002G215100 exo70 exocyst complex subunit, putative, expressed K07195: EXOC7, exocyst complex component 7
9 Sobic.004G040350 - -
10 Sobic.006G195700 WD domain, G-beta repeat domain containing protein, expressed K14962: WDR82, SWD2, COMPASS component SWD2
11 Sobic.007G061000 mitotic checkpoint protein, putative, expressed K14298: RAE1, mRNA export factor
12 Sobic.001G205200 expressed protein -
13 Sobic.010G220500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase, putative, expressed K02083: allantoate deiminase
14 Sobic.007G160600 CAMK_CAMK_like.38 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
15 Sobic.003G289400 farnesyltransferase subunit beta, putative, expressed K05954: protein farnesyltransferase subunit beta
16 Sobic.002G394400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.006G048600 - -
18 Sobic.004G007100 - -
19 Sobic.003G411900 auxin response factor 2(PubMedID : 26465154)@auxin response factor 2(PubMedID : 26465154)@"domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@"OsARF4(Ortholog in rice:Hu et al., 2018)"(PubMedID : 31659874)@Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@auxin response factor, putative, expressed -
20 Sobic.003G406300 - -


Gene co-expression network
sample Sobic001G421900 Sobic001G421900 Sobic004G146800 Sobic004G146800 Sobic001G421900--Sobic004G146800 Sobic001G297500 Sobic001G297500 Sobic001G421900--Sobic001G297500 Sobic001G522600 Sobic001G522600 Sobic001G421900--Sobic001G522600 Sobic001G010300 Sobic001G010300 Sobic001G421900--Sobic001G010300 Sobic002G126500 Sobic002G126500 Sobic001G421900--Sobic002G126500 Sobic010G249100 Sobic010G249100 Sobic001G421900--Sobic010G249100 Sobic001G472600 Sobic001G472600 Sobic001G421900--Sobic001G472600 Sobic002G215100 Sobic002G215100 Sobic001G421900--Sobic002G215100 Sobic004G040350 Sobic004G040350 Sobic001G421900--Sobic004G040350 Sobic004G146800--Sobic001G421900 Sobic001G425800 Sobic001G425800 Sobic004G146800--Sobic001G425800 Sobic001G358000 Sobic001G358000 Sobic004G146800--Sobic001G358000 Sobic004G146800--Sobic001G472600 Sobic005G026100 Sobic005G026100 Sobic004G146800--Sobic005G026100 Sobic004G146800--Sobic010G249100 Sobic009G165800 Sobic009G165800 Sobic004G146800--Sobic009G165800 Sobic007G019800 Sobic007G019800 Sobic004G146800--Sobic007G019800 Sobic006G209400 Sobic006G209400 Sobic004G146800--Sobic006G209400 Sobic004G117900 Sobic004G117900 Sobic001G297500--Sobic004G117900 Sobic001G126100 Sobic001G126100 Sobic001G297500--Sobic001G126100 Sobic010G240900 Sobic010G240900 Sobic001G297500--Sobic010G240900 Sobic007G207400 Sobic007G207400 Sobic001G297500--Sobic007G207400 Sobic006G048600 Sobic006G048600 Sobic001G297500--Sobic006G048600 Sobic010G004300 Sobic010G004300 Sobic001G297500--Sobic010G004300 Sobic003G313300 Sobic003G313300 Sobic001G297500--Sobic003G313300 Sobic001G067200 Sobic001G067200 Sobic001G297500--Sobic001G067200 Sobic008G188900 Sobic008G188900 Sobic001G297500--Sobic008G188900 Sobic007G061000 Sobic007G061000 Sobic001G522600--Sobic007G061000 Sobic001G392300 Sobic001G392300 Sobic001G522600--Sobic001G392300 Sobic008G002500 Sobic008G002500 Sobic001G522600--Sobic008G002500 Sobic010G236400 Sobic010G236400 Sobic001G522600--Sobic010G236400 Sobic009G095100 Sobic009G095100 Sobic001G522600--Sobic009G095100 Sobic008G014500 Sobic008G014500 Sobic001G522600--Sobic008G014500 Sobic006G200700 Sobic006G200700 Sobic001G522600--Sobic006G200700 Sobic009G044800 Sobic009G044800 Sobic001G522600--Sobic009G044800 Sobic007G183900 Sobic007G183900 Sobic001G522600--Sobic007G183900 Sobic001G010300--Sobic010G236400 Sobic010G245000 Sobic010G245000 Sobic001G010300--Sobic010G245000 Sobic004G084300 Sobic004G084300 Sobic001G010300--Sobic004G084300 Sobic006G195700 Sobic006G195700 Sobic001G010300--Sobic006G195700 Sobic007G075900 Sobic007G075900 Sobic001G010300--Sobic007G075900 Sobic004G158200 Sobic004G158200 Sobic001G010300--Sobic004G158200 Sobic005G154500 Sobic005G154500 Sobic001G010300--Sobic005G154500 Sobic008G173100 Sobic008G173100 Sobic001G010300--Sobic008G173100 Sobic003G401100 Sobic003G401100 Sobic001G010300--Sobic003G401100 Sobic002G126500--Sobic010G236400 Sobic003G029100 Sobic003G029100 Sobic002G126500--Sobic003G029100 Sobic003G241200 Sobic003G241200 Sobic002G126500--Sobic003G241200 Sobic002G126500--Sobic004G084300 Sobic001G375700 Sobic001G375700 Sobic002G126500--Sobic001G375700 Sobic008G179700 Sobic008G179700 Sobic002G126500--Sobic008G179700 Sobic003G081000 Sobic003G081000 Sobic002G126500--Sobic003G081000 Sobic002G034600 Sobic002G034600 Sobic002G126500--Sobic002G034600 Sobic008G112800 Sobic008G112800 Sobic002G126500--Sobic008G112800 Sobic001G220300 Sobic001G220300 Sobic010G249100--Sobic001G220300 Sobic008G124900 Sobic008G124900 Sobic010G249100--Sobic008G124900 Sobic010G249100--Sobic001G392300 Sobic006G204800 Sobic006G204800 Sobic010G249100--Sobic006G204800 Sobic010G118950 Sobic010G118950 Sobic010G249100--Sobic010G118950 Sobic010G053800 Sobic010G053800 Sobic010G249100--Sobic010G053800 Sobic001G205200 Sobic001G205200 Sobic010G249100--Sobic001G205200 Sobic004G353000 Sobic004G353000 Sobic010G249100--Sobic004G353000 Sobic010G275500 Sobic010G275500 Sobic010G249100--Sobic010G275500 Sobic001G472600--Sobic007G019800 Sobic001G472600--Sobic002G215100 Sobic001G421300 Sobic001G421300 Sobic001G472600--Sobic001G421300 Sobic006G109300 Sobic006G109300 Sobic001G472600--Sobic006G109300 Sobic002G262600 Sobic002G262600 Sobic001G472600--Sobic002G262600 Sobic003G345400 Sobic003G345400 Sobic001G472600--Sobic003G345400 Sobic001G472600--Sobic004G146800 Sobic003G084700 Sobic003G084700 Sobic001G472600--Sobic003G084700 Sobic003G119800 Sobic003G119800 Sobic001G472600--Sobic003G119800 Sobic010G101800 Sobic010G101800 Sobic002G215100--Sobic010G101800 Sobic007G132400 Sobic007G132400 Sobic002G215100--Sobic007G132400 Sobic002G310200 Sobic002G310200 Sobic002G215100--Sobic002G310200 Sobic007G104800 Sobic007G104800 Sobic002G215100--Sobic007G104800 Sobic002G215100--Sobic006G195700 Sobic009G056800 Sobic009G056800 Sobic002G215100--Sobic009G056800 Sobic010G028800 Sobic010G028800 Sobic002G215100--Sobic010G028800 Sobic007G118200 Sobic007G118200 Sobic002G215100--Sobic007G118200 Sobic001G409600 Sobic001G409600 Sobic002G215100--Sobic001G409600 Sobic001G456900 Sobic001G456900 Sobic004G040350--Sobic001G456900 Sobic007G161300 Sobic007G161300 Sobic004G040350--Sobic007G161300 Sobic007G146100 Sobic007G146100 Sobic004G040350--Sobic007G146100 Sobic010G139000 Sobic010G139000 Sobic004G040350--Sobic010G139000 Sobic002G180666 Sobic002G180666 Sobic004G040350--Sobic002G180666 Sobic008G028700 Sobic008G028700 Sobic004G040350--Sobic008G028700 Sobic003G241100 Sobic003G241100 Sobic004G040350--Sobic003G241100 Sobic002G145101 Sobic002G145101 Sobic004G040350--Sobic002G145101 Sobic002G151300 Sobic002G151300 Sobic004G040350--Sobic002G151300
Octagon: transcription factors


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