Gene annotation
Transcriptome id Sobic.002G394400.1,Sobic.002G394400.3,Sobic.002G394400.2
Synonym Sb02g040970
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A1W0W7J4
Pfam PF08711
Panther DB PTHR15141 PTHR15141:SF47
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006351; transcription, DNA-templated GO:0005634nucleus GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G05140 : Transcription elongation factor (TFIIS) family protein
RAP-DB (Rice) LOC_Os07g44820.1 : expressed protein
MaizeGDB (Corn) Zm00025a048947 , Zm00025a015310
Brachypodium -
Barley -
Wheat TraesCS2A02G144800 , TraesCS2D02G148700
Populus -


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cDNA sequences
Sobic.002G394400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G153200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.001G207700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.001G463000 syntaxin 6, N-terminal domain containing protein, expressed -
4 Sobic.003G389700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.001G421300 protein kinase APK1A, chloroplast precursor, putative, expressed -
6 Sobic.001G421900 SCARECROW, putative, expressed -
7 Sobic.002G294500 OsRCI2-11 - Hydrophobic protein OSR8, expressed -
8 Sobic.001G472600 gibberellin response modulator protein, putative, expressed -
9 Sobic.003G269200 expressed protein -
10 Sobic.003G278500 RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
11 Sobic.007G160600 CAMK_CAMK_like.38 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
12 Sobic.002G215100 exo70 exocyst complex subunit, putative, expressed K07195: EXOC7, exocyst complex component 7
13 Sobic.004G146800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@spotted leaf 11, putative, expressed -
14 Sobic.010G193300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lipid phosphatase protein, putative, expressed -
15 Sobic.003G341400 phox domain-containing protein, putative, expressed -
16 Sobic.001G386300 zinc finger, C3HC4 type domain containing protein, expressed -
17 Sobic.010G097600 OsLIM - LIM domain protein, putative actin-binding protein and transcription factor, expressed -
18 Sobic.003G034700 phosphofructokinase 3(PubMedID : 26465154)@6-phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
19 Sobic.001G484800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@acetyltransferase, GNAT family, putative, expressed -
20 Sobic.002G248900 expressed protein -


Gene co-expression network
sample Sobic002G394400 Sobic002G394400 Sobic001G153200 Sobic001G153200 Sobic002G394400--Sobic001G153200 Sobic001G207700 Sobic001G207700 Sobic002G394400--Sobic001G207700 Sobic001G463000 Sobic001G463000 Sobic002G394400--Sobic001G463000 Sobic003G389700 Sobic003G389700 Sobic002G394400--Sobic003G389700 Sobic001G421300 Sobic001G421300 Sobic002G394400--Sobic001G421300 Sobic001G421900 Sobic001G421900 Sobic002G394400--Sobic001G421900 Sobic002G294500 Sobic002G294500 Sobic002G394400--Sobic002G294500 Sobic001G472600 Sobic001G472600 Sobic002G394400--Sobic001G472600 Sobic003G269200 Sobic003G269200 Sobic002G394400--Sobic003G269200 Sobic001G153200--Sobic002G394400 Sobic003G034700 Sobic003G034700 Sobic001G153200--Sobic003G034700 Sobic002G215100 Sobic002G215100 Sobic001G153200--Sobic002G215100 Sobic001G153200--Sobic001G421300 Sobic010G193300 Sobic010G193300 Sobic001G153200--Sobic010G193300 Sobic001G153200--Sobic001G472600 Sobic004G146800 Sobic004G146800 Sobic001G153200--Sobic004G146800 Sobic001G153200--Sobic003G269200 Sobic001G153200--Sobic001G463000 Sobic001G484800 Sobic001G484800 Sobic001G207700--Sobic001G484800 Sobic001G239500 Sobic001G239500 Sobic001G207700--Sobic001G239500 Sobic003G009700 Sobic003G009700 Sobic001G207700--Sobic003G009700 Sobic006G225200 Sobic006G225200 Sobic001G207700--Sobic006G225200 Sobic006G205100 Sobic006G205100 Sobic001G207700--Sobic006G205100 Sobic002G121600 Sobic002G121600 Sobic001G207700--Sobic002G121600 Sobic001G207700--Sobic002G394400 Sobic006G173000 Sobic006G173000 Sobic001G207700--Sobic006G173000 Sobic002G401100 Sobic002G401100 Sobic001G207700--Sobic002G401100 Sobic003G119800 Sobic003G119800 Sobic001G463000--Sobic003G119800 Sobic004G031600 Sobic004G031600 Sobic001G463000--Sobic004G031600 Sobic001G541100 Sobic001G541100 Sobic001G463000--Sobic001G541100 Sobic009G219000 Sobic009G219000 Sobic001G463000--Sobic009G219000 Sobic009G138100 Sobic009G138100 Sobic001G463000--Sobic009G138100 Sobic004G274400 Sobic004G274400 Sobic001G463000--Sobic004G274400 Sobic003G361500 Sobic003G361500 Sobic001G463000--Sobic003G361500 Sobic001G516100 Sobic001G516100 Sobic001G463000--Sobic001G516100 Sobic001G463000--Sobic002G394400 Sobic008G149000 Sobic008G149000 Sobic003G389700--Sobic008G149000 Sobic003G395900 Sobic003G395900 Sobic003G389700--Sobic003G395900 Sobic005G110502 Sobic005G110502 Sobic003G389700--Sobic005G110502 Sobic003G235500 Sobic003G235500 Sobic003G389700--Sobic003G235500 Sobic001G470900 Sobic001G470900 Sobic003G389700--Sobic001G470900 Sobic004G219400 Sobic004G219400 Sobic003G389700--Sobic004G219400 Sobic003G389700--Sobic002G394400 Sobic009G222200 Sobic009G222200 Sobic003G389700--Sobic009G222200 Sobic001G111700 Sobic001G111700 Sobic003G389700--Sobic001G111700 Sobic001G421300--Sobic001G472600 Sobic001G351700 Sobic001G351700 Sobic001G421300--Sobic001G351700 Sobic009G259400 Sobic009G259400 Sobic001G421300--Sobic009G259400 Sobic001G421300--Sobic002G215100 Sobic009G205200 Sobic009G205200 Sobic001G421300--Sobic009G205200 Sobic003G345400 Sobic003G345400 Sobic001G421300--Sobic003G345400 Sobic001G186800 Sobic001G186800 Sobic001G421300--Sobic001G186800 Sobic004G121100 Sobic004G121100 Sobic001G421300--Sobic004G121100 Sobic006G258500 Sobic006G258500 Sobic001G421300--Sobic006G258500 Sobic001G421900--Sobic004G146800 Sobic001G297500 Sobic001G297500 Sobic001G421900--Sobic001G297500 Sobic001G522600 Sobic001G522600 Sobic001G421900--Sobic001G522600 Sobic001G010300 Sobic001G010300 Sobic001G421900--Sobic001G010300 Sobic002G126500 Sobic002G126500 Sobic001G421900--Sobic002G126500 Sobic010G249100 Sobic010G249100 Sobic001G421900--Sobic010G249100 Sobic001G421900--Sobic001G472600 Sobic001G421900--Sobic002G215100 Sobic004G040350 Sobic004G040350 Sobic001G421900--Sobic004G040350 Sobic002G214400 Sobic002G214400 Sobic002G294500--Sobic002G214400 Sobic001G031100 Sobic001G031100 Sobic002G294500--Sobic001G031100 Sobic003G341400 Sobic003G341400 Sobic002G294500--Sobic003G341400 Sobic003G369900 Sobic003G369900 Sobic002G294500--Sobic003G369900 Sobic002G294500--Sobic001G541100 Sobic001G386300 Sobic001G386300 Sobic002G294500--Sobic001G386300 Sobic010G240900 Sobic010G240900 Sobic002G294500--Sobic010G240900 Sobic007G033800 Sobic007G033800 Sobic002G294500--Sobic007G033800 Sobic002G294500--Sobic009G205200 Sobic007G019800 Sobic007G019800 Sobic001G472600--Sobic007G019800 Sobic001G472600--Sobic002G215100 Sobic001G472600--Sobic001G421300 Sobic006G109300 Sobic006G109300 Sobic001G472600--Sobic006G109300 Sobic002G262600 Sobic002G262600 Sobic001G472600--Sobic002G262600 Sobic001G472600--Sobic003G345400 Sobic001G472600--Sobic004G146800 Sobic003G084700 Sobic003G084700 Sobic001G472600--Sobic003G084700 Sobic001G472600--Sobic003G119800 Sobic003G269200--Sobic002G215100 Sobic003G269200--Sobic003G119800 Sobic003G269200--Sobic003G341400 Sobic003G269200--Sobic001G153200 Sobic008G189400 Sobic008G189400 Sobic003G269200--Sobic008G189400 Sobic003G269200--Sobic001G421300 Sobic003G269200--Sobic009G219000 Sobic001G425800 Sobic001G425800 Sobic003G269200--Sobic001G425800 Sobic001G427300 Sobic001G427300 Sobic003G269200--Sobic001G427300
Octagon: transcription factors


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