Gene annotation
Transcriptome id Sobic.003G341400.1
Synonym SNX2b, Sb03g038540
Functional annotation phox domain-containing protein, putative, expressed
UniProt A0A1W0W088
Pfam PF09325 PF00787
Panther DB PTHR10555 PTHR10555:SF146
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G07120 : sorting nexin 2B
RAP-DB (Rice) LOC_Os01g61150.1 : phox domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a027020
Brachypodium KQK10389 , KQK10388 , KQK10390
Barley HORVU3Hr1G088220.21 , HORVU3Hr1G088220.22 , HORVU3Hr1G088220.23 , HORVU1Hr1G070330.20 , HORVU1Hr1G070330.9 , HORVU3Hr1G088220.19 , HORVU3Hr1G088220.17 , HORVU1Hr1G070330.18 , HORVU1Hr1G070330.19 , HORVU1Hr1G070330.16 , HORVU1Hr1G070330.17 , HORVU1Hr1G070330.11
Wheat TraesCS3B02G379800 , TraesCS3A02G347900 , TraesCS3D02G341500
Populus -


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cDNA sequences
Sobic.003G341400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G104800 expressed protein -
2 Sobic.002G126500 RNA recognition motif containing protein, expressed -
3 Sobic.001G119300 mRNA cap guanine-N7 methyltransferase 1, putative, expressed K00565: mRNA (guanine-N7-)-methyltransferase
4 Sobic.010G101800 dynamin, putative, expressed K01528: dynamin 1/3
5 Sobic.009G205200 OsFBX170 - F-box domain containing protein, expressed -
6 Sobic.001G007000 -(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed K19269: PGP, phosphoglycolate phosphatase
7 Sobic.002G297200 ZOS9-19 - C2H2 zinc finger protein, expressed -
8 Sobic.009G249500 mitochondrial carrier protein, putative, expressed K14684: solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41
9 Sobic.007G009400 bromodomain domain containing protein, expressed -
10 Sobic.007G115200 hydrolase, NUDIX family, domain containing protein, expressed -
11 Sobic.001G220300 serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed K11583: serine/threonine-protein phosphatase 2A regulatory subunit B''
12 Sobic.004G353200 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
13 Sobic.008G112800 pre-mRNA-processing factor 6, putative, expressed K12855: PRPF6, pre-mRNA-processing factor 6
14 Sobic.004G146500 ataxin-2 related protein, putative, expressed -
15 Sobic.007G125000 OsAPRL4 adenosine 5\'-phosphosulfate reductase-like OsAPRL4, expressed -
16 Sobic.010G249100 ZOS8-11 - C2H2 zinc finger protein, expressed -
17 Sobic.010G240900 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
18 Sobic.002G350300 gamma response I protein, putative, expressed K13096: splicing factor 4
19 Sobic.009G219000 ANTH/ENTH domain containing protein, putative, expressed -
20 Sobic.001G251700 OsPP2Ac-4 - Phosphatase 2A isoform 4 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit


Gene co-expression network
sample Sobic003G341400 Sobic003G341400 Sobic007G104800 Sobic007G104800 Sobic003G341400--Sobic007G104800 Sobic002G126500 Sobic002G126500 Sobic003G341400--Sobic002G126500 Sobic001G119300 Sobic001G119300 Sobic003G341400--Sobic001G119300 Sobic010G101800 Sobic010G101800 Sobic003G341400--Sobic010G101800 Sobic009G205200 Sobic009G205200 Sobic003G341400--Sobic009G205200 Sobic001G007000 Sobic001G007000 Sobic003G341400--Sobic001G007000 Sobic002G297200 Sobic002G297200 Sobic003G341400--Sobic002G297200 Sobic009G249500 Sobic009G249500 Sobic003G341400--Sobic009G249500 Sobic007G009400 Sobic007G009400 Sobic003G341400--Sobic007G009400 Sobic001G497300 Sobic001G497300 Sobic007G104800--Sobic001G497300 Sobic004G021100 Sobic004G021100 Sobic007G104800--Sobic004G021100 Sobic007G104800--Sobic001G119300 Sobic003G187400 Sobic003G187400 Sobic007G104800--Sobic003G187400 Sobic007G200600 Sobic007G200600 Sobic007G104800--Sobic007G200600 Sobic001G512700 Sobic001G512700 Sobic007G104800--Sobic001G512700 Sobic004G205600 Sobic004G205600 Sobic007G104800--Sobic004G205600 Sobic007G026300 Sobic007G026300 Sobic007G104800--Sobic007G026300 Sobic001G107500 Sobic001G107500 Sobic007G104800--Sobic001G107500 Sobic010G236400 Sobic010G236400 Sobic002G126500--Sobic010G236400 Sobic003G029100 Sobic003G029100 Sobic002G126500--Sobic003G029100 Sobic003G241200 Sobic003G241200 Sobic002G126500--Sobic003G241200 Sobic004G084300 Sobic004G084300 Sobic002G126500--Sobic004G084300 Sobic001G375700 Sobic001G375700 Sobic002G126500--Sobic001G375700 Sobic008G179700 Sobic008G179700 Sobic002G126500--Sobic008G179700 Sobic003G081000 Sobic003G081000 Sobic002G126500--Sobic003G081000 Sobic002G034600 Sobic002G034600 Sobic002G126500--Sobic002G034600 Sobic008G112800 Sobic008G112800 Sobic002G126500--Sobic008G112800 Sobic001G119300--Sobic007G104800 Sobic001G119300--Sobic007G200600 Sobic001G119300--Sobic007G026300 Sobic002G350300 Sobic002G350300 Sobic001G119300--Sobic002G350300 Sobic006G088100 Sobic006G088100 Sobic001G119300--Sobic006G088100 Sobic001G119300--Sobic009G205200 Sobic002G200100 Sobic002G200100 Sobic001G119300--Sobic002G200100 Sobic001G371200 Sobic001G371200 Sobic001G119300--Sobic001G371200 Sobic002G090800 Sobic002G090800 Sobic001G119300--Sobic002G090800 Sobic010G101800--Sobic002G297200 Sobic001G155000 Sobic001G155000 Sobic010G101800--Sobic001G155000 Sobic007G167500 Sobic007G167500 Sobic010G101800--Sobic007G167500 Sobic010G028800 Sobic010G028800 Sobic010G101800--Sobic010G028800 Sobic003G397800 Sobic003G397800 Sobic010G101800--Sobic003G397800 Sobic001G409600 Sobic001G409600 Sobic010G101800--Sobic001G409600 Sobic002G310200 Sobic002G310200 Sobic010G101800--Sobic002G310200 Sobic010G053800 Sobic010G053800 Sobic010G101800--Sobic010G053800 Sobic002G309600 Sobic002G309600 Sobic010G101800--Sobic002G309600 Sobic004G121100 Sobic004G121100 Sobic009G205200--Sobic004G121100 Sobic009G205200--Sobic001G107500 Sobic009G205200--Sobic002G350300 Sobic009G205200--Sobic007G104800 Sobic006G200600 Sobic006G200600 Sobic009G205200--Sobic006G200600 Sobic003G345400 Sobic003G345400 Sobic009G205200--Sobic003G345400 Sobic009G205200--Sobic001G119300 Sobic003G248200 Sobic003G248200 Sobic009G205200--Sobic003G248200 Sobic009G205200--Sobic008G179700 Sobic009G068500 Sobic009G068500 Sobic001G007000--Sobic009G068500 Sobic010G251000 Sobic010G251000 Sobic001G007000--Sobic010G251000 Sobic001G392300 Sobic001G392300 Sobic001G007000--Sobic001G392300 Sobic002G359400 Sobic002G359400 Sobic001G007000--Sobic002G359400 Sobic004G353200 Sobic004G353200 Sobic001G007000--Sobic004G353200 Sobic010G205800 Sobic010G205800 Sobic001G007000--Sobic010G205800 Sobic008G046500 Sobic008G046500 Sobic001G007000--Sobic008G046500 Sobic001G080700 Sobic001G080700 Sobic001G007000--Sobic001G080700 Sobic001G031100 Sobic001G031100 Sobic001G007000--Sobic001G031100 Sobic002G297200--Sobic003G397800 Sobic002G297200--Sobic010G101800 Sobic002G297200--Sobic001G512700 Sobic004G146500 Sobic004G146500 Sobic002G297200--Sobic004G146500 Sobic008G047800 Sobic008G047800 Sobic002G297200--Sobic008G047800 Sobic001G109800 Sobic001G109800 Sobic002G297200--Sobic001G109800 Sobic002G297200--Sobic001G155000 Sobic001G205200 Sobic001G205200 Sobic002G297200--Sobic001G205200 Sobic002G006900 Sobic002G006900 Sobic002G297200--Sobic002G006900 Sobic009G249500--Sobic003G341400 Sobic001G251700 Sobic001G251700 Sobic009G249500--Sobic001G251700 Sobic009G249500--Sobic004G353200 Sobic002G260400 Sobic002G260400 Sobic009G249500--Sobic002G260400 Sobic002G370900 Sobic002G370900 Sobic009G249500--Sobic002G370900 Sobic003G332800 Sobic003G332800 Sobic009G249500--Sobic003G332800 Sobic009G245800 Sobic009G245800 Sobic009G249500--Sobic009G245800 Sobic009G249500--Sobic007G167500 Sobic001G176200 Sobic001G176200 Sobic009G249500--Sobic001G176200 Sobic007G009400--Sobic003G241200 Sobic003G401100 Sobic003G401100 Sobic007G009400--Sobic003G401100 Sobic007G009400--Sobic004G205600 Sobic007G009400--Sobic010G101800 Sobic007G009400--Sobic007G104800 Sobic004G325400 Sobic004G325400 Sobic007G009400--Sobic004G325400 Sobic002G388200 Sobic002G388200 Sobic007G009400--Sobic002G388200 Sobic007G009400--Sobic001G409600 Sobic007G009400--Sobic003G081000
Octagon: transcription factors


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